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9Y42

Structure of naked mole-rat ribosome with P/E tRNA and eEF2 (rotated)

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
D0000027biological_processribosomal large subunit assembly
D0003735molecular_functionstructural constituent of ribosome
D0005730cellular_componentnucleolus
D0005737cellular_componentcytoplasm
D0008097molecular_function5S rRNA binding
D0022625cellular_componentcytosolic large ribosomal subunit
dd0002181biological_processcytoplasmic translation
dd0003735molecular_functionstructural constituent of ribosome
dd0005791cellular_componentrough endoplasmic reticulum
dd0005829cellular_componentcytosol
dd0008270molecular_functionzinc ion binding
dd0022626cellular_componentcytosolic ribosome
dd0022627cellular_componentcytosolic small ribosomal subunit
DD0003723molecular_functionRNA binding
DD0003735molecular_functionstructural constituent of ribosome
DD0005634cellular_componentnucleus
DD0005730cellular_componentnucleolus
DD0005743cellular_componentmitochondrial inner membrane
DD0005819cellular_componentspindle
DD0022626cellular_componentcytosolic ribosome
DD0022627cellular_componentcytosolic small ribosomal subunit
DD0140078molecular_functionclass I DNA-(apurinic or apyrimidinic site) endonuclease activity
DD2001235biological_processpositive regulation of apoptotic signaling pathway
e0005737cellular_componentcytoplasm
e0022625cellular_componentcytosolic large ribosomal subunit
f0002181biological_processcytoplasmic translation
f0003735molecular_functionstructural constituent of ribosome
f0005737cellular_componentcytoplasm
f0022625cellular_componentcytosolic large ribosomal subunit
f0045202cellular_componentsynapse
FF0022626cellular_componentcytosolic ribosome
gg0006417biological_processregulation of translation
gg0015935cellular_componentsmall ribosomal subunit
gg0030425cellular_componentdendrite
GG0003735molecular_functionstructural constituent of ribosome
GG0005737cellular_componentcytoplasm
GG0005840cellular_componentribosome
GG0022627cellular_componentcytosolic small ribosomal subunit
GG0030425cellular_componentdendrite
GG0042254biological_processribosome biogenesis
GG0042593biological_processglucose homeostasis
GG0048471cellular_componentperinuclear region of cytoplasm
HH0006364biological_processrRNA processing
HH0022627cellular_componentcytosolic small ribosomal subunit
HH0030686cellular_component90S preribosome
HH0032040cellular_componentsmall-subunit processome
HH0042274biological_processribosomal small subunit biogenesis
JJ0002181biological_processcytoplasmic translation
JJ0003735molecular_functionstructural constituent of ribosome
JJ0005730cellular_componentnucleolus
JJ0005737cellular_componentcytoplasm
JJ0015935cellular_componentsmall ribosomal subunit
JJ0019843molecular_functionrRNA binding
JJ0022626cellular_componentcytosolic ribosome
JJ0022627cellular_componentcytosolic small ribosomal subunit
JJ0032040cellular_componentsmall-subunit processome
JJ0042274biological_processribosomal small subunit biogenesis
JJ0045202cellular_componentsynapse
JJ1990904cellular_componentribonucleoprotein complex
k0003735molecular_functionstructural constituent of ribosome
k0022618biological_processprotein-RNA complex assembly
k0022625cellular_componentcytosolic large ribosomal subunit
LL0003735molecular_functionstructural constituent of ribosome
LL0005737cellular_componentcytoplasm
LL0022626cellular_componentcytosolic ribosome
LL0022627cellular_componentcytosolic small ribosomal subunit
LL0032040cellular_componentsmall-subunit processome
LL0042274biological_processribosomal small subunit biogenesis
LL0045202cellular_componentsynapse
n0003735molecular_functionstructural constituent of ribosome
n0006412biological_processtranslation
N0002181biological_processcytoplasmic translation
N0003723molecular_functionRNA binding
N0003735molecular_functionstructural constituent of ribosome
N0022625cellular_componentcytosolic large ribosomal subunit
N0022626cellular_componentcytosolic ribosome
N0044391cellular_componentribosomal subunit
NN0003735molecular_functionstructural constituent of ribosome
NN0005730cellular_componentnucleolus
NN0022626cellular_componentcytosolic ribosome
NN0022627cellular_componentcytosolic small ribosomal subunit
NN0070181molecular_functionsmall ribosomal subunit rRNA binding
p0005737cellular_componentcytoplasm
p0022625cellular_componentcytosolic large ribosomal subunit
p0070180molecular_functionlarge ribosomal subunit rRNA binding
Q0003723molecular_functionRNA binding
Q0003735molecular_functionstructural constituent of ribosome
Q0005791cellular_componentrough endoplasmic reticulum
Q0022625cellular_componentcytosolic large ribosomal subunit
QQ0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
QQ0003723molecular_functionRNA binding
QQ0003735molecular_functionstructural constituent of ribosome
QQ0005783cellular_componentendoplasmic reticulum
QQ0005829cellular_componentcytosol
QQ0006364biological_processrRNA processing
QQ0015935cellular_componentsmall ribosomal subunit
QQ0022626cellular_componentcytosolic ribosome
QQ0022627cellular_componentcytosolic small ribosomal subunit
QQ0032040cellular_componentsmall-subunit processome
QQ0042274biological_processribosomal small subunit biogenesis
QQ0045202cellular_componentsynapse
RR0003735molecular_functionstructural constituent of ribosome
RR0022626cellular_componentcytosolic ribosome
RR0022627cellular_componentcytosolic small ribosomal subunit
RR0045202cellular_componentsynapse
T0001650cellular_componentfibrillar center
T0003735molecular_functionstructural constituent of ribosome
T0005783cellular_componentendoplasmic reticulum
T0005829cellular_componentcytosol
T0022625cellular_componentcytosolic large ribosomal subunit
T0022626cellular_componentcytosolic ribosome
TT0000028biological_processribosomal small subunit assembly
TT0003723molecular_functionRNA binding
TT0003735molecular_functionstructural constituent of ribosome
TT0005634cellular_componentnucleus
TT0005737cellular_componentcytoplasm
TT0022626cellular_componentcytosolic ribosome
TT0022627cellular_componentcytosolic small ribosomal subunit
V0000122biological_processnegative regulation of transcription by RNA polymerase II
V0001223molecular_functiontranscription coactivator binding
V0002181biological_processcytoplasmic translation
V0003735molecular_functionstructural constituent of ribosome
V0005654cellular_componentnucleoplasm
V0005730cellular_componentnucleolus
V0005737cellular_componentcytoplasm
V0005829cellular_componentcytosol
V0008284biological_processpositive regulation of cell population proliferation
V0015934cellular_componentlarge ribosomal subunit
V0022625cellular_componentcytosolic large ribosomal subunit
V0022626cellular_componentcytosolic ribosome
V0031625molecular_functionubiquitin protein ligase binding
V0032986biological_processprotein-DNA complex disassembly
V0032991cellular_componentprotein-containing complex
V0045202cellular_componentsynapse
V0050821biological_processprotein stabilization
V0070180molecular_functionlarge ribosomal subunit rRNA binding
V1901798biological_processpositive regulation of signal transduction by p53 class mediator
V1990948molecular_functionubiquitin ligase inhibitor activity
V2000059biological_processnegative regulation of ubiquitin-dependent protein catabolic process
W0002181biological_processcytoplasmic translation
W0003735molecular_functionstructural constituent of ribosome
W0005730cellular_componentnucleolus
W0005737cellular_componentcytoplasm
W0005829cellular_componentcytosol
W0022625cellular_componentcytosolic large ribosomal subunit
W0022626cellular_componentcytosolic ribosome
W0045202cellular_componentsynapse
WW0003735molecular_functionstructural constituent of ribosome
WW0005737cellular_componentcytoplasm
WW0008284biological_processpositive regulation of cell population proliferation
WW0009615biological_processresponse to virus
WW0022626cellular_componentcytosolic ribosome
WW0022627cellular_componentcytosolic small ribosomal subunit
WW0032040cellular_componentsmall-subunit processome
WW0042274biological_processribosomal small subunit biogenesis
WW0045202cellular_componentsynapse
WW0045787biological_processpositive regulation of cell cycle
XX0005791cellular_componentrough endoplasmic reticulum
XX0022626cellular_componentcytosolic ribosome
Z0005791cellular_componentrough endoplasmic reticulum
Z0005840cellular_componentribosome
Functional Information from PROSITE/UniProt
site_idPS00049
Number of Residues27
DetailsRIBOSOMAL_L14 Ribosomal protein L14 signature. AVVIrqrksyrrk.DGvflyFedNagVI
ChainResidueDetails
VALA79-ILE105

site_idPS00050
Number of Residues16
DetailsRIBOSOMAL_L23 Ribosomal protein L23 signature. KKAYVRLApdydaldV
ChainResidueDetails
XLYS134-VAL149

site_idPS00051
Number of Residues17
DetailsRIBOSOMAL_L39E Ribosomal protein L39e signature. KTgnkIryNskrRHWRR
ChainResidueDetails
lLYS30-ARG46

site_idPS00052
Number of Residues27
DetailsRIBOSOMAL_S7 Ribosomal protein S7 signature. ErLtnsMMmhgrnnGKKlmtvrIVkhA
ChainResidueDetails
FFGLU70-ALA96

site_idPS00053
Number of Residues18
DetailsRIBOSOMAL_S8 Ribosomal protein S8 signature. GfiVLTTSaGIMdheeAR
ChainResidueDetails
WWGLY100-ARG117

site_idPS00054
Number of Residues23
DetailsRIBOSOMAL_S11 Ribosomal protein S11 signature. LrALarS.GMkIgrieDvTPiPSD
ChainResidueDetails
OOLEU116-ASP138

site_idPS00055
Number of Residues8
DetailsRIBOSOMAL_S12 Ribosomal protein S12 signature. KqPNSAiR
ChainResidueDetails
XXLYS60-ARG67

site_idPS00056
Number of Residues13
DetailsRIBOSOMAL_S17 Ribosomal protein S17 signature. GDiVtVgEcRPLS
ChainResidueDetails
LLGLY123-SER135

site_idPS00301
Number of Residues16
DetailsG_TR_1 Translational (tr)-type guanine nucleotide-binding (G) domain signature. DTrkdEQeRCITIksT
ChainResidueDetails
EFASP58-THR73

site_idPS00323
Number of Residues25
DetailsRIBOSOMAL_S19 Ribosomal protein S19 signature. NGKtfnqveIkpemIGhyLGEFsiT
ChainResidueDetails
PPASN98-THR122

site_idPS00358
Number of Residues17
DetailsRIBOSOMAL_L5 Ribosomal protein L5 signature. LeqLTGQtpVfSkARyT
ChainResidueDetails
JLEU40-THR56

site_idPS00359
Number of Residues16
DetailsRIBOSOMAL_L11 Ribosomal protein L11 signature. KeIlGTaqSVGcNVdG
ChainResidueDetails
tLYS130-GLY145

site_idPS00360
Number of Residues19
DetailsRIBOSOMAL_S9 Ribosomal protein S9 signature. GGGhvAQiyAirqSiSKAL
ChainResidueDetails
QQGLY74-LEU92

site_idPS00361
Number of Residues16
DetailsRIBOSOMAL_S10 Ribosomal protein S10 signature. AkekNLkvkGPVrMPT
ChainResidueDetails
UUALA43-THR58

site_idPS00362
Number of Residues31
DetailsRIBOSOMAL_S15 Ribosomal protein S15 signature. VrkHLernRkDkdAkfrLilIesrihrLarY
ChainResidueDetails
NNVAL98-TYR128

site_idPS00464
Number of Residues25
DetailsRIBOSOMAL_L22 Ribosomal protein L22 signature. RrrTyRAhGRinpymsspCHIEMiL
ChainResidueDetails
PARG126-LEU150

site_idPS00467
Number of Residues12
DetailsRIBOSOMAL_L2 Ribosomal protein L2 signature. PrvRGVAmNPvE
ChainResidueDetails
APRO197-GLU208

site_idPS00474
Number of Residues24
DetailsRIBOSOMAL_L3 Ribosomal protein L3 signature. FgqdemiDviGvTkGKGykGvtsR
ChainResidueDetails
BPHE211-ARG234

site_idPS00475
Number of Residues32
DetailsRIBOSOMAL_L15 Ribosomal protein L15 signature. KVLGkGkLpkqp.ViVkakfFSrrAeekIkgvG
ChainResidueDetails
aLYS110-GLY141

site_idPS00526
Number of Residues20
DetailsRIBOSOMAL_L19E Ribosomal protein L19e signature. QKRLaSsvlrCGkkkVWLDP
ChainResidueDetails
WGLN7-PRO26

site_idPS00527
Number of Residues23
DetailsRIBOSOMAL_S14 Ribosomal protein S14 signature. RvCsnrhglirkyg.LNMCRqCFR
ChainResidueDetails
ddARG22-ARG44

site_idPS00528
Number of Residues15
DetailsRIBOSOMAL_S4E Ribosomal protein S4e signature. HlKRVAaPkhWmLdK
ChainResidueDetails
EEHIS8-LYS22

site_idPS00529
Number of Residues23
DetailsRIBOSOMAL_S24E Ribosomal protein S24e signature. FGggKTtGFGmIYDSldyakknE
ChainResidueDetails
YYPHE64-GLU86

site_idPS00548
Number of Residues37
DetailsRIBOSOMAL_S3 Ribosomal protein S3 signature. AKsmkfvdGlMihSgdpVnyyVDtavrhvlLrqGvlG
ChainResidueDetails
DDALA147-GLY183

site_idPS00578
Number of Residues12
DetailsRIBOSOMAL_S6E Ribosomal protein S6e signature. ISGGnDkqGfPM
ChainResidueDetails
GGILE52-MET63

site_idPS00579
Number of Residues15
DetailsRIBOSOMAL_L29 Ribosomal protein L29 signature. KLSKIRvVRKSIARV
ChainResidueDetails
hLYS43-VAL57

site_idPS00580
Number of Residues21
DetailsRIBOSOMAL_L32E Ribosomal protein L32e signature. FiRhqsdRyvKIkrn..WRKprG
ChainResidueDetails
ePHE20-GLY40

site_idPS00585
Number of Residues33
DetailsRIBOSOMAL_S5 Ribosomal protein S5 signature. GQrtrFkAfvAIGDyn.GhVGlGvkcsk.EVat.AI
ChainResidueDetails
CCGLY119-ILE151

site_idPS00628
Number of Residues20
DetailsRIBOSOMAL_S19E Ribosomal protein S19e signature. PshfsrgSksVaRrVLQaLE
ChainResidueDetails
TTPRO89-GLU108

site_idPS00632
Number of Residues25
DetailsRIBOSOMAL_S4 Ribosomal protein S4 signature. LErRLqtqVFKlglAkSihhARvLI
ChainResidueDetails
JJLEU106-ILE130

site_idPS00634
Number of Residues33
DetailsRIBOSOMAL_L30 Ribosomal protein L30 signature. VLqlLrLrQifNgTfvklnkasinMLriVepYI
ChainResidueDetails
FVAL107-ILE139

site_idPS00646
Number of Residues14
DetailsRIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHfwGlrVRGQ
ChainResidueDetails
SSARG121-GLN134

site_idPS00678
Number of Residues15
DetailsWD_REPEATS_1 Trp-Asp (WD) repeats signature. ALSGswDgTLRLWDL
ChainResidueDetails
ggALA78-LEU92
ggILE120-THR134
ggILE165-LEU179
ggCYS207-LEU221

site_idPS00687
Number of Residues8
DetailsALDEHYDE_DEHYDR_GLU Aldehyde dehydrogenases glutamic acid active site. GESSGKNV
ChainResidueDetails
CGLY15-VAL22

site_idPS00700
Number of Residues22
DetailsRIBOSOMAL_L6_2 Ribosomal protein L6 signature 2. QattVknKdiRkFlDGIYVseK
ChainResidueDetails
HGLN163-LYS184

site_idPS00709
Number of Residues25
DetailsRIBOSOMAL_L30E_1 Ribosomal protein L30e signature 1. SgkyvlGyKqtLKmiRqGkgKlVIL
ChainResidueDetails
uSER24-LEU48

site_idPS00712
Number of Residues16
DetailsRIBOSOMAL_S17E Ribosomal protein S17e signature. IpSKkLRNkIAGYvTH
ChainResidueDetails
RRILE41-HIS56

site_idPS00733
Number of Residues8
DetailsRIBOSOMAL_S26E Ribosomal protein S26e signature. YCVSCAIH
ChainResidueDetails
aaTYR73-HIS80

site_idPS00783
Number of Residues24
DetailsRIBOSOMAL_L13 Ribosomal protein L13 signature. VRGMLPhktkrGQaaldrLkVFdG
ChainResidueDetails
OVAL84-GLY107

site_idPS00939
Number of Residues27
DetailsRIBOSOMAL_L1E Ribosomal protein L1e signature. NttqKryAIcSALaASAlpalvmsKGH
ChainResidueDetails
CASN116-HIS142

site_idPS00948
Number of Residues14
DetailsRIBOSOMAL_S7E Ribosomal protein S7e signature. RLvRELEKKFSgKH
ChainResidueDetails
HHARG78-HIS91

site_idPS00961
Number of Residues9
DetailsRIBOSOMAL_S28E Ribosomal protein S28e signature. ESEREARrL
ChainResidueDetails
ccGLU60-LEU68

site_idPS00962
Number of Residues12
DetailsRIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. VlKFLAAGTHLG
ChainResidueDetails
AAVAL15-GLY26

site_idPS00963
Number of Residues25
DetailsRIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PrlLVVtDpraDhqpLtEasyvNLP
ChainResidueDetails
AAPRO119-PRO143

site_idPS00993
Number of Residues21
DetailsRIBOSOMAL_L30E_2 Ribosomal protein L30e signature 2. ELGTacGKyyrvctLaIiDpG
ChainResidueDetails
uGLU80-GLY100

site_idPS00996
Number of Residues9
DetailsRIBOSOMAL_S21E Ribosomal protein S21e signature. LYVPRKCSA
ChainResidueDetails
VVLEU11-ALA19

site_idPS01073
Number of Residues18
DetailsRIBOSOMAL_L24E Ribosomal protein L24e signature. FsGykIyPGhGrrYaRtD
ChainResidueDetails
cPHE8-ASP25

site_idPS01077
Number of Residues20
DetailsRIBOSOMAL_L37E Ribosomal protein L37e signature. GTsSfGkRrnkt.HtlCrRCG
ChainResidueDetails
jGLY4-GLY23

site_idPS01082
Number of Residues18
DetailsRIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CrkmgVPYciLkGKarLG
ChainResidueDetails
GCYS174-GLY191

site_idPS01104
Number of Residues15
DetailsRIBOSOMAL_L13E Ribosomal protein L13e signature. RaGRGFSLeELrvaG
ChainResidueDetails
LARG71-GLY85

site_idPS01105
Number of Residues22
DetailsRIBOSOMAL_L35AE Ribosomal protein L35Ae signature. GKVtRaHGnsGmVrAkFrsnLP
ChainResidueDetails
fGLY72-PRO93

site_idPS01106
Number of Residues18
DetailsRIBOSOMAL_L18E Ribosomal protein L18e signature. KrLfmSRtnRPpLSLsRM
ChainResidueDetails
QLYS49-MET66

site_idPS01107
Number of Residues12
DetailsRIBOSOMAL_L27E Ribosomal protein L27e signature. GKNkWFFqkLRF
ChainResidueDetails
ZGLY125-PHE136

site_idPS01108
Number of Residues19
DetailsRIBOSOMAL_L24 Ribosomal protein L24 signature. DDeVqVVrGhyKGqqiGkV
ChainResidueDetails
YASP52-VAL70

site_idPS01144
Number of Residues15
DetailsRIBOSOMAL_L31E Ribosomal protein L31e signature. VRIDtrLNkAvWaKG
ChainResidueDetails
dVAL62-GLY76

site_idPS01145
Number of Residues14
DetailsRIBOSOMAL_L34E Ribosomal protein L34e signature. TaSnKtrlsRTPGN
ChainResidueDetails
gTHR15-ASN28

site_idPS01168
Number of Residues33
DetailsRIBOSOMAL_S27E Ribosomal protein S27e signature. KCpgCykittvFShAqtvvlCvgCStvLcqPtG
ChainResidueDetails
bbLYS36-GLY68

site_idPS01170
Number of Residues19
DetailsRIBOSOMAL_L6E Ribosomal protein L6e signature. NrvPLRRthqkFVIATSt.K
ChainResidueDetails
EASN185-LYS203

site_idPS01171
Number of Residues26
DetailsRIBOSOMAL_L21E Ribosomal protein L21e signature. GDiVdikgmgtvqk.GmpHkcYhGkTG
ChainResidueDetails
TGLY37-GLY62

site_idPS01172
Number of Residues12
DetailsRIBOSOMAL_L44E Ribosomal protein L44e signature. KtTKKivLRleC
ChainResidueDetails
oLYS61-CYS72

site_idPS01189
Number of Residues19
DetailsRIBOSOMAL_S12E Ribosomal protein S12e signature. ALQevLktAlihDGLarGI
ChainResidueDetails
MMALA17-ILE35

site_idPS01190
Number of Residues11
DetailsRIBOSOMAL_L36E Ribosomal protein L36e signature. PYERRaMELLK
ChainResidueDetails
iPRO52-LYS62

site_idPS01191
Number of Residues13
DetailsRIBOSOMAL_S3AE Ribosomal protein S3Ae signature. LkGRVfEvSLaDL
ChainResidueDetails
BBLEU62-LEU74

site_idPS01193
Number of Residues20
DetailsRIBOSOMAL_S8E Ribosomal protein S8e signature. RrkTGGkrkpy.HkKrKyELG
ChainResidueDetails
IIARG11-GLY30

site_idPS01194
Number of Residues24
DetailsRIBOSOMAL_L15E Ribosomal protein L15e signature. DKARrLGYkAkqGYVIYRiRVrRG
ChainResidueDetails
NASP46-GLY69

site_idPS01257
Number of Residues22
DetailsRIBOSOMAL_L10E Ribosomal protein L10e signature. ADRlqtGMRgAFGKPqGtvARV
ChainResidueDetails
IALA108-VAL129

256448

PDB entries from 2026-07-15

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