9V52

Structure of TolC and YbjP closed state complex

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
C1	0015562	molecular_function	efflux transmembrane transporter activity
C1	0019867	cellular_component	outer membrane
C1	0055085	biological_process	transmembrane transport
C2	0015562	molecular_function	efflux transmembrane transporter activity
C2	0019867	cellular_component	outer membrane
C2	0055085	biological_process	transmembrane transport
C3	0015562	molecular_function	efflux transmembrane transporter activity
C3	0019867	cellular_component	outer membrane
C3	0055085	biological_process	transmembrane transport

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	630
Details	Topological domain: {"description":"Periplasmic","evidences":[{"source":"PubMed","id":"18406332","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2VDD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2VDE","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	33
Details	Transmembrane: {"description":"Beta stranded; Name=S1","evidences":[{"source":"PubMed","id":"18406332","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2VDD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2VDE","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	81
Details	Topological domain: {"description":"Extracellular","evidences":[{"source":"PubMed","id":"18406332","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2VDD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2VDE","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	39
Details	Transmembrane: {"description":"Beta stranded; Name=S2","evidences":[{"source":"PubMed","id":"18406332","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2VDD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2VDE","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	30
Details	Transmembrane: {"description":"Beta stranded; Name=S4","evidences":[{"source":"PubMed","id":"18406332","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2VDD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2VDE","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	30
Details	Transmembrane: {"description":"Beta stranded; Name=S5","evidences":[{"source":"PubMed","id":"18406332","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2VDD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2VDE","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI7
Number of Residues	84
Details	Region: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI8
Number of Residues	45
Details	Compositional bias: {"description":"Polar residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI9
Number of Residues	3
Details	Lipidation: {"description":"S-diacylglycerol cysteine","evidences":[{"source":"PROSITE-ProRule","id":"PRU00303","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---