Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

9V1J

Cryo- EM structure of small subunit (body) of 75S ribosome with P- tRNA from Entamoeba histolytica

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
sB	0003729	molecular_function	mRNA binding
sB	0003735	molecular_function	structural constituent of ribosome
sB	0005840	cellular_component	ribosome
sB	0022627	cellular_component	cytosolic small ribosomal subunit
sB	1990904	cellular_component	ribonucleoprotein complex
sC	0000028	biological_process	ribosomal small subunit assembly
sC	0003723	molecular_function	RNA binding
sC	0003735	molecular_function	structural constituent of ribosome
sC	0005737	cellular_component	cytoplasm
sC	0005840	cellular_component	ribosome
sC	0008270	molecular_function	zinc ion binding
sC	0022627	cellular_component	cytosolic small ribosomal subunit
sC	0046872	molecular_function	metal ion binding
sC	1990904	cellular_component	ribonucleoprotein complex
sb	0000028	biological_process	ribosomal small subunit assembly
sb	0002181	biological_process	cytoplasmic translation
sb	0003735	molecular_function	structural constituent of ribosome
sb	0005737	cellular_component	cytoplasm
sb	0005840	cellular_component	ribosome
sb	0006412	biological_process	translation
sb	0022627	cellular_component	cytosolic small ribosomal subunit
sb	1990904	cellular_component	ribonucleoprotein complex
sc	0003735	molecular_function	structural constituent of ribosome
sc	0005840	cellular_component	ribosome
sc	0006412	biological_process	translation
sc	0022627	cellular_component	cytosolic small ribosomal subunit
sc	1990904	cellular_component	ribonucleoprotein complex
se	0003735	molecular_function	structural constituent of ribosome
se	0005737	cellular_component	cytoplasm
se	0005829	cellular_component	cytosol
se	0005840	cellular_component	ribosome
se	0006412	biological_process	translation
se	0022627	cellular_component	cytosolic small ribosomal subunit
se	1990904	cellular_component	ribonucleoprotein complex
sf	0003723	molecular_function	RNA binding
sf	0003735	molecular_function	structural constituent of ribosome
sf	0005840	cellular_component	ribosome
sf	0006412	biological_process	translation
sf	0019843	molecular_function	rRNA binding
sf	0022627	cellular_component	cytosolic small ribosomal subunit
sf	1990904	cellular_component	ribonucleoprotein complex
sh	0005840	cellular_component	ribosome
sh	1990904	cellular_component	ribonucleoprotein complex
si	0003735	molecular_function	structural constituent of ribosome
si	0005840	cellular_component	ribosome
si	0006364	biological_process	rRNA processing
si	0022627	cellular_component	cytosolic small ribosomal subunit
si	0032040	cellular_component	small-subunit processome
si	0042274	biological_process	ribosomal small subunit biogenesis
si	1990904	cellular_component	ribonucleoprotein complex
sj	0000462	biological_process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
sj	0003735	molecular_function	structural constituent of ribosome
sj	0005840	cellular_component	ribosome
sj	0022627	cellular_component	cytosolic small ribosomal subunit
sj	1990904	cellular_component	ribonucleoprotein complex
sk	0003723	molecular_function	RNA binding
sk	0003735	molecular_function	structural constituent of ribosome
sk	0005840	cellular_component	ribosome
sk	0019843	molecular_function	rRNA binding
sk	0022627	cellular_component	cytosolic small ribosomal subunit
sk	0042274	biological_process	ribosomal small subunit biogenesis
sk	1990904	cellular_component	ribonucleoprotein complex
sm	0003735	molecular_function	structural constituent of ribosome
sm	0005840	cellular_component	ribosome
sm	0022627	cellular_component	cytosolic small ribosomal subunit
sm	1990904	cellular_component	ribonucleoprotein complex
so	0003735	molecular_function	structural constituent of ribosome
so	0005730	cellular_component	nucleolus
so	0005840	cellular_component	ribosome
so	0022627	cellular_component	cytosolic small ribosomal subunit
so	0070181	molecular_function	small ribosomal subunit rRNA binding
so	1990904	cellular_component	ribonucleoprotein complex
sp	0000028	biological_process	ribosomal small subunit assembly
sp	0003735	molecular_function	structural constituent of ribosome
sp	0005840	cellular_component	ribosome
sp	0006412	biological_process	translation
sp	0022627	cellular_component	cytosolic small ribosomal subunit
sp	1990904	cellular_component	ribonucleoprotein complex
sr	0003735	molecular_function	structural constituent of ribosome
sr	0005840	cellular_component	ribosome
sr	0022627	cellular_component	cytosolic small ribosomal subunit
sr	1990904	cellular_component	ribonucleoprotein complex
sx	0000447	biological_process	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
sx	0000461	biological_process	endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
sx	0003735	molecular_function	structural constituent of ribosome
sx	0005840	cellular_component	ribosome
sx	0022627	cellular_component	cytosolic small ribosomal subunit
sx	1990904	cellular_component	ribonucleoprotein complex
sy	0003735	molecular_function	structural constituent of ribosome
sy	0005840	cellular_component	ribosome
sy	0006412	biological_process	translation
sy	0022627	cellular_component	cytosolic small ribosomal subunit
sy	1990904	cellular_component	ribonucleoprotein complex
sz	0002181	biological_process	cytoplasmic translation
sz	0003735	molecular_function	structural constituent of ribosome
sz	0005840	cellular_component	ribosome
sz	0022627	cellular_component	cytosolic small ribosomal subunit
sz	1990904	cellular_component	ribonucleoprotein complex

Functional Information from PROSITE/UniProt

site_id	PS00053
Number of Residues	18
Details	RIBOSOMAL_S8 Ribosomal protein S8 signature. GalVLTTSyGILdnteAR

Chain	Residue	Details
sr	GLY100-ARG117

site_id	PS00054
Number of Residues	23
Details	RIBOSOMAL_S11 Ribosomal protein S11 signature. LrALarA.NMkIgrieDvTPiPTD

Chain	Residue	Details
sp	LEU111-ASP133

site_id	PS00056
Number of Residues	13
Details	RIBOSOMAL_S17 Ribosomal protein S17 signature. GDhVvIgQcRPLS

Chain	Residue	Details
sm	GLY120-SER132

site_id	PS00362
Number of Residues	31
Details	RIBOSOMAL_S15 Ribosomal protein S15 signature. VrkHLeknKkDkdAkyhLilIeskihrLtrY

Chain	Residue	Details
so	VAL98-TYR128

site_id	PS00528
Number of Residues	15
Details	RIBOSOMAL_S4E Ribosomal protein S4e signature. HlKRLNaPhhWmLsK

Chain	Residue	Details
sf	HIS6-LYS20

site_id	PS00578
Number of Residues	12
Details	RIBOSOMAL_S6E Ribosomal protein S6e signature. ITGGcDkdGfPM

Chain	Residue	Details
sh	ILE149-MET160

site_id	PS00632
Number of Residues	25
Details	RIBOSOMAL_S4 Ribosomal protein S4 signature. LErRLqtlVYRkgfAkSihhARvLI

Chain	Residue	Details
sk	LEU105-ILE129

site_id	PS00962
Number of Residues	12
Details	RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. IkMMVACRVHIG

Chain	Residue	Details
sb	ILE20-GLY31

site_id	PS00963
Number of Residues	25
Details	RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PrlIIVsDpsvDhqaLrEsgyiNVP

Chain	Residue	Details
sb	PRO126-PRO150

site_id	PS01168
Number of Residues	33
Details	RIBOSOMAL_S27E Ribosomal protein S27e signature. KCpkCgattttFShAhrqilCqkCGqpLgqPtG

Chain	Residue	Details
sC	LYS37-GLY69

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	22
Details	Zinc finger: {"description":"C4-type","evidences":[{"evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)