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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9UXA

local ARP-NCP structure of the ncBAF-nucleosome complex in the apo state

Functional Information from GO Data
ChainGOidnamespacecontents
A0000786cellular_componentnucleosome
A0005634cellular_componentnucleus
A0005694cellular_componentchromosome
A0030527molecular_functionstructural constituent of chromatin
A0031492molecular_functionnucleosomal DNA binding
A0031507biological_processheterochromatin formation
B0000786cellular_componentnucleosome
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005694cellular_componentchromosome
B0006334biological_processnucleosome assembly
B0030527molecular_functionstructural constituent of chromatin
B0031507biological_processheterochromatin formation
C0000786cellular_componentnucleosome
C0005634cellular_componentnucleus
C0005694cellular_componentchromosome
C0030527molecular_functionstructural constituent of chromatin
C0031507biological_processheterochromatin formation
D0000786cellular_componentnucleosome
D0002227biological_processinnate immune response in mucosa
D0003677molecular_functionDNA binding
D0005634cellular_componentnucleus
D0005694cellular_componentchromosome
D0006325biological_processchromatin organization
D0019731biological_processantibacterial humoral response
D0030527molecular_functionstructural constituent of chromatin
D0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
E0000786cellular_componentnucleosome
E0005634cellular_componentnucleus
E0005694cellular_componentchromosome
E0030527molecular_functionstructural constituent of chromatin
E0031492molecular_functionnucleosomal DNA binding
E0031507biological_processheterochromatin formation
F0000786cellular_componentnucleosome
F0005515molecular_functionprotein binding
F0005634cellular_componentnucleus
F0005694cellular_componentchromosome
F0006334biological_processnucleosome assembly
F0030527molecular_functionstructural constituent of chromatin
F0031507biological_processheterochromatin formation
G0000786cellular_componentnucleosome
G0005634cellular_componentnucleus
G0005694cellular_componentchromosome
G0030527molecular_functionstructural constituent of chromatin
G0031507biological_processheterochromatin formation
H0000786cellular_componentnucleosome
H0002227biological_processinnate immune response in mucosa
H0003677molecular_functionDNA binding
H0005634cellular_componentnucleus
H0005694cellular_componentchromosome
H0006325biological_processchromatin organization
H0019731biological_processantibacterial humoral response
H0030527molecular_functionstructural constituent of chromatin
H0061844biological_processantimicrobial humoral immune response mediated by antimicrobial peptide
I0000776cellular_componentkinetochore
I0000785cellular_componentchromatin
I0000786cellular_componentnucleosome
I0000930cellular_componentgamma-tubulin complex
I0001738biological_processmorphogenesis of a polarized epithelium
I0005200molecular_functionstructural constituent of cytoskeleton
I0005515molecular_functionprotein binding
I0005576cellular_componentextracellular region
I0005634cellular_componentnucleus
I0005654cellular_componentnucleoplasm
I0005737cellular_componentcytoplasm
I0005829cellular_componentcytosol
I0005856cellular_componentcytoskeleton
I0005884cellular_componentactin filament
I0005886cellular_componentplasma membrane
I0005903cellular_componentbrush border
I0005911cellular_componentcell-cell junction
I0005912cellular_componentadherens junction
I0005925cellular_componentfocal adhesion
I0006338biological_processchromatin remodeling
I0006357biological_processregulation of transcription by RNA polymerase II
I0007010biological_processcytoskeleton organization
I0007020biological_processmicrotubule nucleation
I0007163biological_processestablishment or maintenance of cell polarity
I0007409biological_processaxonogenesis
I0008284biological_processpositive regulation of cell population proliferation
I0015629cellular_componentactin cytoskeleton
I0016020cellular_componentmembrane
I0016363cellular_componentnuclear matrix
I0016514cellular_componentSWI/SNF complex
I0016586cellular_componentRSC-type complex
I0016887molecular_functionATP hydrolysis activity
I0019894molecular_functionkinesin binding
I0019901molecular_functionprotein kinase binding
I0021762biological_processsubstantia nigra development
I0030027cellular_componentlamellipodium
I0030071biological_processregulation of mitotic metaphase/anaphase transition
I0030235molecular_functionnitric-oxide synthase regulator activity
I0030424cellular_componentaxon
I0030863cellular_componentcortical cytoskeleton
I0030957molecular_functionTat protein binding
I0031492molecular_functionnucleosomal DNA binding
I0031982cellular_componentvesicle
I0032991cellular_componentprotein-containing complex
I0034333biological_processadherens junction assembly
I0035060cellular_componentbrahma complex
I0035267cellular_componentNuA4 histone acetyltransferase complex
I0035633biological_processmaintenance of blood-brain barrier
I0036464cellular_componentcytoplasmic ribonucleoprotein granule
I0042802molecular_functionidentical protein binding
I0042981biological_processregulation of apoptotic process
I0043296cellular_componentapical junction complex
I0044305cellular_componentcalyx of Held
I0045176biological_processapical protein localization
I0045202cellular_componentsynapse
I0045582biological_processpositive regulation of T cell differentiation
I0045596biological_processnegative regulation of cell differentiation
I0045597biological_processpositive regulation of cell differentiation
I0045663biological_processpositive regulation of myoblast differentiation
I0045893biological_processpositive regulation of DNA-templated transcription
I0048156molecular_functiontau protein binding
I0048870biological_processcell motility
I0050998molecular_functionnitric-oxide synthase binding
I0051621biological_processregulation of norepinephrine uptake
I0051623biological_processpositive regulation of norepinephrine uptake
I0051726biological_processregulation of cell cycle
I0070062cellular_componentextracellular exosome
I0070160cellular_componenttight junction
I0070316biological_processregulation of G0 to G1 transition
I0070527biological_processplatelet aggregation
I0071564cellular_componentnpBAF complex
I0071565cellular_componentnBAF complex
I0071896biological_processprotein localization to adherens junction
I0072562cellular_componentblood microparticle
I0072749biological_processcellular response to cytochalasin B
I0097433cellular_componentdense body
I0098685cellular_componentSchaffer collateral - CA1 synapse
I0098793cellular_componentpresynapse
I0098871cellular_componentpostsynaptic actin cytoskeleton
I0098973molecular_functionstructural constituent of postsynaptic actin cytoskeleton
I0098974biological_processpostsynaptic actin cytoskeleton organization
I0098978cellular_componentglutamatergic synapse
I0140092cellular_componentbBAF complex
I0140288cellular_componentGBAF complex
I0141108molecular_functiontransporter regulator activity
I0150111biological_processregulation of transepithelial transport
I1900242biological_processregulation of synaptic vesicle endocytosis
I1902459biological_processpositive regulation of stem cell population maintenance
I1903076biological_processregulation of protein localization to plasma membrane
I1905168biological_processpositive regulation of double-strand break repair via homologous recombination
I1990904cellular_componentribonucleoprotein complex
I2000045biological_processregulation of G1/S transition of mitotic cell cycle
I2000779biological_processregulation of double-strand break repair
I2000781biological_processpositive regulation of double-strand break repair
I2000819biological_processregulation of nucleotide-excision repair
J0000723biological_processtelomere maintenance
J0000776cellular_componentkinetochore
J0000785cellular_componentchromatin
J0000786cellular_componentnucleosome
J0003407biological_processneural retina development
J0003682molecular_functionchromatin binding
J0003713molecular_functiontranscription coactivator activity
J0005515molecular_functionprotein binding
J0005634cellular_componentnucleus
J0005654cellular_componentnucleoplasm
J0005886cellular_componentplasma membrane
J0006275biological_processregulation of DNA replication
J0006282biological_processregulation of DNA repair
J0006338biological_processchromatin remodeling
J0006355biological_processregulation of DNA-templated transcription
J0006357biological_processregulation of transcription by RNA polymerase II
J0007165biological_processsignal transduction
J0007399biological_processnervous system development
J0008284biological_processpositive regulation of cell population proliferation
J0016363cellular_componentnuclear matrix
J0016514cellular_componentSWI/SNF complex
J0016586cellular_componentRSC-type complex
J0021510biological_processspinal cord development
J0030071biological_processregulation of mitotic metaphase/anaphase transition
J0031011cellular_componentIno80 complex
J0031492molecular_functionnucleosomal DNA binding
J0032991cellular_componentprotein-containing complex
J0033044biological_processregulation of chromosome organization
J0035060cellular_componentbrahma complex
J0035267cellular_componentNuA4 histone acetyltransferase complex
J0042981biological_processregulation of apoptotic process
J0045582biological_processpositive regulation of T cell differentiation
J0045596biological_processnegative regulation of cell differentiation
J0045597biological_processpositive regulation of cell differentiation
J0045663biological_processpositive regulation of myoblast differentiation
J0045739biological_processpositive regulation of DNA repair
J0045893biological_processpositive regulation of DNA-templated transcription
J0045995biological_processregulation of embryonic development
J0048731biological_processsystem development
J0051726biological_processregulation of cell cycle
J0060382biological_processregulation of DNA strand elongation
J0070316biological_processregulation of G0 to G1 transition
J0071564cellular_componentnpBAF complex
J0140288cellular_componentGBAF complex
J1902459biological_processpositive regulation of stem cell population maintenance
J1904507biological_processpositive regulation of telomere maintenance in response to DNA damage
J1905168biological_processpositive regulation of double-strand break repair via homologous recombination
J2000045biological_processregulation of G1/S transition of mitotic cell cycle
J2000779biological_processregulation of double-strand break repair
J2000781biological_processpositive regulation of double-strand break repair
J2000819biological_processregulation of nucleotide-excision repair
K0000122biological_processnegative regulation of transcription by RNA polymerase II
K0000776cellular_componentkinetochore
K0000785cellular_componentchromatin
K0000791cellular_componenteuchromatin
K0000977molecular_functionRNA polymerase II transcription regulatory region sequence-specific DNA binding
K0000978molecular_functionRNA polymerase II cis-regulatory region sequence-specific DNA binding
K0001164molecular_functionRNA polymerase I core promoter sequence-specific DNA binding
K0001188biological_processRNA polymerase I preinitiation complex assembly
K0001221molecular_functiontranscription coregulator binding
K0001650cellular_componentfibrillar center
K0002039molecular_functionp53 binding
K0003407biological_processneural retina development
K0003682molecular_functionchromatin binding
K0003713molecular_functiontranscription coactivator activity
K0003714molecular_functiontranscription corepressor activity
K0004386molecular_functionhelicase activity
K0005515molecular_functionprotein binding
K0005576cellular_componentextracellular region
K0005634cellular_componentnucleus
K0005654cellular_componentnucleoplasm
K0005726cellular_componentperichromatin fibrils
K0005730cellular_componentnucleolus
K0006338biological_processchromatin remodeling
K0006357biological_processregulation of transcription by RNA polymerase II
K0007399biological_processnervous system development
K0008094molecular_functionATP-dependent activity, acting on DNA
K0008284biological_processpositive regulation of cell population proliferation
K0016020cellular_componentmembrane
K0016363cellular_componentnuclear matrix
K0016514cellular_componentSWI/SNF complex
K0016586cellular_componentRSC-type complex
K0016887molecular_functionATP hydrolysis activity
K0030071biological_processregulation of mitotic metaphase/anaphase transition
K0030177biological_processpositive regulation of Wnt signaling pathway
K0030308biological_processnegative regulation of cell growth
K0030957molecular_functionTat protein binding
K0031492molecular_functionnucleosomal DNA binding
K0032991cellular_componentprotein-containing complex
K0042802molecular_functionidentical protein binding
K0043923biological_processhost-mediated activation of viral transcription
K0045582biological_processpositive regulation of T cell differentiation
K0045596biological_processnegative regulation of cell differentiation
K0045597biological_processpositive regulation of cell differentiation
K0045663biological_processpositive regulation of myoblast differentiation
K0045815biological_processtranscription initiation-coupled chromatin remodeling
K0045892biological_processnegative regulation of DNA-templated transcription
K0045893biological_processpositive regulation of DNA-templated transcription
K0045944biological_processpositive regulation of transcription by RNA polymerase II
K0050681molecular_functionnuclear androgen receptor binding
K0060766biological_processnegative regulation of androgen receptor signaling pathway
K0070182molecular_functionDNA polymerase binding
K0070316biological_processregulation of G0 to G1 transition
K0071564cellular_componentnpBAF complex
K0071565cellular_componentnBAF complex
K0106222molecular_functionlncRNA binding
K0120162biological_processpositive regulation of cold-induced thermogenesis
K0140092cellular_componentbBAF complex
K0140288cellular_componentGBAF complex
K0140658molecular_functionATP-dependent chromatin remodeler activity
K1901798biological_processpositive regulation of signal transduction by p53 class mediator
K1901838biological_processpositive regulation of transcription of nucleolar large rRNA by RNA polymerase I
K1902459biological_processpositive regulation of stem cell population maintenance
K1902661biological_processpositive regulation of glucose mediated signaling pathway
K1902895biological_processpositive regulation of miRNA transcription
K2000045biological_processregulation of G1/S transition of mitotic cell cycle
K2000781biological_processpositive regulation of double-strand break repair
K2000819biological_processregulation of nucleotide-excision repair
L0000785cellular_componentchromatin
L0003779molecular_functionactin binding
L0005515molecular_functionprotein binding
L0005654cellular_componentnucleoplasm
L0006338biological_processchromatin remodeling
L0006357biological_processregulation of transcription by RNA polymerase II
L0008284biological_processpositive regulation of cell population proliferation
L0016514cellular_componentSWI/SNF complex
L0030071biological_processregulation of mitotic metaphase/anaphase transition
L0045596biological_processnegative regulation of cell differentiation
L0070316biological_processregulation of G0 to G1 transition
L0140288cellular_componentGBAF complex
L1902459biological_processpositive regulation of stem cell population maintenance
L2000045biological_processregulation of G1/S transition of mitotic cell cycle
L2000781biological_processpositive regulation of double-strand break repair
L2000819biological_processregulation of nucleotide-excision repair
Functional Information from PROSITE/UniProt
site_idPS00046
Number of Residues7
DetailsHISTONE_H2A Histone H2A signature. AGLqFPV
ChainResidueDetails
CALA23-VAL29
site_idPS00047
Number of Residues5
DetailsHISTONE_H4 Histone H4 signature. GAKRH
ChainResidueDetails
BGLY14-HIS18
site_idPS00141
Number of Residues12
DetailsASP_PROTEASE Eukaryotic and viral aspartyl proteases active site. LILDSGATHTTA
ChainResidueDetails
JLEU168-ALA179
site_idPS00322
Number of Residues7
DetailsHISTONE_H3_1 Histone H3 signature 1. KAPRKQL
ChainResidueDetails
ALYS14-LEU20
site_idPS00357
Number of Residues23
DetailsHISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG
ChainResidueDetails
DARG89-GLY111
site_idPS00406
Number of Residues11
DetailsACTINS_1 Actins signature 1. YVGDEAQs.KRG
ChainResidueDetails
ITYR53-GLY63
site_idPS00432
Number of Residues9
DetailsACTINS_2 Actins signature 2. WISKqEYDE
ChainResidueDetails
ITRP356-GLU364
JTRP410-GLU418
site_idPS00633
Number of Residues58
DetailsBROMODOMAIN_1 Bromodomain signature. SevFiqlpSrkelp..EYYelIrkpVdfkkIkerirnhk..Yrslndlekdvml.LcqNAqtF
ChainResidueDetails
KSER1482-PHE1539
site_idPS00959
Number of Residues9
DetailsHISTONE_H3_2 Histone H3 signature 2. PFqRLVREI
ChainResidueDetails
APRO66-ILE74
site_idPS01132
Number of Residues13
DetailsACTINS_ACT_LIKE Actins and actin-related proteins signature. LLTEApLNPkaNR
ChainResidueDetails
ILEU104-ARG116
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI2
Number of Residues4
DetailsModified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI3
Number of Residues4
DetailsModified residue: {"description":"N6-propionyllysine; alternate","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI4
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine; by PAK2","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI5
Number of Residues4
DetailsModified residue: {"description":"Phosphotyrosine","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI6
Number of Residues2
DetailsModified residue: {"description":"N6-methacryllysine; alternate","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI7
Number of Residues2
DetailsModified residue: {"description":"N6-succinyllysine","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI8
Number of Residues2
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in UFM1); alternate","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI9
Number of Residues4
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI10
Number of Residues1
DetailsModified residue: {"description":"Tele-methylhistidine","evidences":[{"source":"PubMed","id":"30526847","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"30626964","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"30785395","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"31388018","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"32503840","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI11
Number of Residues1
DetailsModified residue: {"description":"N6-methyllysine","evidences":[{"source":"PubMed","id":"23673617","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI12
Number of Residues1
DetailsCross-link: {"description":"(Microbial infection) Isoglutamyl lysine isopeptide (Lys-Glu) (interchain with E-270); by Vibrio toxins RtxA and VgrG1","evidences":[{"source":"PubMed","id":"19015515","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails
site_idSWS_FT_FI13
Number of Residues2
DetailsCross-link: {"description":"(Microbial infection) Isoglutamyl lysine isopeptide (Glu-Lys) (interchain with K-50); by Vibrio toxins RtxA and VgrG1","evidences":[{"source":"PubMed","id":"19015515","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails
site_idSWS_FT_FI14
Number of Residues1
DetailsModified residue: {"description":"N-acetylserine","evidences":[{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"JAN-2010","submissionDatabase":"UniProtKB","authors":["Bienvenut W.V."]}},{"source":"PubMed","id":"22814378","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI15
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI16
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"17081983","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"20068231","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

255239

PDB entries from 2026-06-17

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