Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

9SS2

30S ribosomal subunit RimM-KO with IF1 and IF3 (State III)

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
AA	0000028	biological_process	ribosomal small subunit assembly
AA	0002181	biological_process	cytoplasmic translation
AA	0003735	molecular_function	structural constituent of ribosome
AA	0005515	molecular_function	protein binding
AA	0005737	cellular_component	cytoplasm
AA	0006412	biological_process	translation
AA	0008270	molecular_function	zinc ion binding
AA	0022627	cellular_component	cytosolic small ribosomal subunit
AB	0000028	biological_process	ribosomal small subunit assembly
AB	0002181	biological_process	cytoplasmic translation
AB	0003729	molecular_function	mRNA binding
AB	0003735	molecular_function	structural constituent of ribosome
AB	0005737	cellular_component	cytoplasm
AB	0005829	cellular_component	cytosol
AB	0006412	biological_process	translation
AB	0019843	molecular_function	rRNA binding
AB	0022627	cellular_component	cytosolic small ribosomal subunit
AC	0000028	biological_process	ribosomal small subunit assembly
AC	0000900	molecular_function	mRNA regulatory element binding translation repressor activity
AC	0002181	biological_process	cytoplasmic translation
AC	0003735	molecular_function	structural constituent of ribosome
AC	0005515	molecular_function	protein binding
AC	0005737	cellular_component	cytoplasm
AC	0005829	cellular_component	cytosol
AC	0006412	biological_process	translation
AC	0015935	cellular_component	small ribosomal subunit
AC	0019843	molecular_function	rRNA binding
AC	0022627	cellular_component	cytosolic small ribosomal subunit
AC	0031564	biological_process	transcription antitermination
AC	0042274	biological_process	ribosomal small subunit biogenesis
AC	0045947	biological_process	negative regulation of translational initiation
AC	0048027	molecular_function	mRNA 5'-UTR binding
AC	1990145	biological_process	maintenance of translational fidelity
AD	0000028	biological_process	ribosomal small subunit assembly
AD	0002181	biological_process	cytoplasmic translation
AD	0003735	molecular_function	structural constituent of ribosome
AD	0005515	molecular_function	protein binding
AD	0005737	cellular_component	cytoplasm
AD	0005829	cellular_component	cytosol
AD	0006412	biological_process	translation
AD	0019843	molecular_function	rRNA binding
AD	0022627	cellular_component	cytosolic small ribosomal subunit
AD	0042254	biological_process	ribosome biogenesis
AD	1990145	biological_process	maintenance of translational fidelity
AE	0002181	biological_process	cytoplasmic translation
AE	0003735	molecular_function	structural constituent of ribosome
AE	0005515	molecular_function	protein binding
AE	0005737	cellular_component	cytoplasm
AE	0005829	cellular_component	cytosol
AE	0006412	biological_process	translation
AE	0019843	molecular_function	rRNA binding
AE	0022627	cellular_component	cytosolic small ribosomal subunit
AE	0048027	molecular_function	mRNA 5'-UTR binding
AE	0070181	molecular_function	small ribosomal subunit rRNA binding
AF	0000028	biological_process	ribosomal small subunit assembly
AF	0000049	molecular_function	tRNA binding
AF	0002181	biological_process	cytoplasmic translation
AF	0003729	molecular_function	mRNA binding
AF	0003735	molecular_function	structural constituent of ribosome
AF	0005515	molecular_function	protein binding
AF	0005737	cellular_component	cytoplasm
AF	0005829	cellular_component	cytosol
AF	0005840	cellular_component	ribosome
AF	0006412	biological_process	translation
AF	0016020	cellular_component	membrane
AF	0017148	biological_process	negative regulation of translation
AF	0019843	molecular_function	rRNA binding
AF	0022627	cellular_component	cytosolic small ribosomal subunit
AG	0000028	biological_process	ribosomal small subunit assembly
AG	0002181	biological_process	cytoplasmic translation
AG	0003735	molecular_function	structural constituent of ribosome
AG	0005737	cellular_component	cytoplasm
AG	0005829	cellular_component	cytosol
AG	0006412	biological_process	translation
AG	0019843	molecular_function	rRNA binding
AG	0022627	cellular_component	cytosolic small ribosomal subunit
AG	0043488	biological_process	regulation of mRNA stability
AH	0002181	biological_process	cytoplasmic translation
AH	0003723	molecular_function	RNA binding
AH	0003735	molecular_function	structural constituent of ribosome
AH	0005737	cellular_component	cytoplasm
AH	0005829	cellular_component	cytosol
AH	0006412	biological_process	translation
AH	0015935	cellular_component	small ribosomal subunit
AH	0022627	cellular_component	cytosolic small ribosomal subunit
AI	0000049	molecular_function	tRNA binding
AI	0001072	molecular_function	transcription antitermination factor activity, RNA binding
AI	0002181	biological_process	cytoplasmic translation
AI	0003735	molecular_function	structural constituent of ribosome
AI	0005515	molecular_function	protein binding
AI	0005737	cellular_component	cytoplasm
AI	0005829	cellular_component	cytosol
AI	0006412	biological_process	translation
AI	0015935	cellular_component	small ribosomal subunit
AI	0022627	cellular_component	cytosolic small ribosomal subunit
AI	0031564	biological_process	transcription antitermination
AI	0032784	biological_process	regulation of DNA-templated transcription elongation
AJ	0002181	biological_process	cytoplasmic translation
AJ	0003735	molecular_function	structural constituent of ribosome
AJ	0005515	molecular_function	protein binding
AJ	0005737	cellular_component	cytoplasm
AJ	0005829	cellular_component	cytosol
AJ	0006412	biological_process	translation
AJ	0019843	molecular_function	rRNA binding
AJ	0022627	cellular_component	cytosolic small ribosomal subunit
AJ	0070181	molecular_function	small ribosomal subunit rRNA binding
AK	0000049	molecular_function	tRNA binding
AK	0000372	biological_process	Group I intron splicing
AK	0002181	biological_process	cytoplasmic translation
AK	0003735	molecular_function	structural constituent of ribosome
AK	0005515	molecular_function	protein binding
AK	0005737	cellular_component	cytoplasm
AK	0005829	cellular_component	cytosol
AK	0005840	cellular_component	ribosome
AK	0006412	biological_process	translation
AK	0019843	molecular_function	rRNA binding
AK	0022627	cellular_component	cytosolic small ribosomal subunit
AK	0033120	biological_process	positive regulation of RNA splicing
AK	0034336	molecular_function	misfolded RNA binding
AK	0034337	biological_process	RNA folding
AK	1990145	biological_process	maintenance of translational fidelity
AL	0000049	molecular_function	tRNA binding
AL	0002181	biological_process	cytoplasmic translation
AL	0003735	molecular_function	structural constituent of ribosome
AL	0005515	molecular_function	protein binding
AL	0005737	cellular_component	cytoplasm
AL	0005829	cellular_component	cytosol
AL	0006412	biological_process	translation
AL	0015935	cellular_component	small ribosomal subunit
AL	0019843	molecular_function	rRNA binding
AL	0022627	cellular_component	cytosolic small ribosomal subunit
AM	0000028	biological_process	ribosomal small subunit assembly
AM	0000049	molecular_function	tRNA binding
AM	0002181	biological_process	cytoplasmic translation
AM	0003735	molecular_function	structural constituent of ribosome
AM	0005737	cellular_component	cytoplasm
AM	0006412	biological_process	translation
AM	0015935	cellular_component	small ribosomal subunit
AM	0019843	molecular_function	rRNA binding
AM	0022627	cellular_component	cytosolic small ribosomal subunit
AN	0000028	biological_process	ribosomal small subunit assembly
AN	0002181	biological_process	cytoplasmic translation
AN	0003735	molecular_function	structural constituent of ribosome
AN	0005737	cellular_component	cytoplasm
AN	0005829	cellular_component	cytosol
AN	0006412	biological_process	translation
AN	0019843	molecular_function	rRNA binding
AN	0022627	cellular_component	cytosolic small ribosomal subunit
AN	0070181	molecular_function	small ribosomal subunit rRNA binding
AO	0000028	biological_process	ribosomal small subunit assembly
AO	0000400	molecular_function	four-way junction DNA binding
AO	0002181	biological_process	cytoplasmic translation
AO	0003735	molecular_function	structural constituent of ribosome
AO	0004520	molecular_function	DNA endonuclease activity
AO	0005737	cellular_component	cytoplasm
AO	0006412	biological_process	translation
AO	0015935	cellular_component	small ribosomal subunit
AO	0022627	cellular_component	cytosolic small ribosomal subunit
AP	0000028	biological_process	ribosomal small subunit assembly
AP	0002181	biological_process	cytoplasmic translation
AP	0003735	molecular_function	structural constituent of ribosome
AP	0005737	cellular_component	cytoplasm
AP	0006412	biological_process	translation
AP	0008270	molecular_function	zinc ion binding
AP	0019843	molecular_function	rRNA binding
AP	0022627	cellular_component	cytosolic small ribosomal subunit
AP	0046677	biological_process	response to antibiotic
AP	0070181	molecular_function	small ribosomal subunit rRNA binding
AQ	0002181	biological_process	cytoplasmic translation
AQ	0003735	molecular_function	structural constituent of ribosome
AQ	0005515	molecular_function	protein binding
AQ	0005737	cellular_component	cytoplasm
AQ	0005829	cellular_component	cytosol
AQ	0006412	biological_process	translation
AQ	0019843	molecular_function	rRNA binding
AQ	0022627	cellular_component	cytosolic small ribosomal subunit
AQ	0048027	molecular_function	mRNA 5'-UTR binding
AQ	0070181	molecular_function	small ribosomal subunit rRNA binding
AR	0002181	biological_process	cytoplasmic translation
AR	0003735	molecular_function	structural constituent of ribosome
AR	0005737	cellular_component	cytoplasm
AR	0005829	cellular_component	cytosol
AR	0006412	biological_process	translation
AR	0019843	molecular_function	rRNA binding
AR	0022627	cellular_component	cytosolic small ribosomal subunit
AS	0000028	biological_process	ribosomal small subunit assembly
AS	0002181	biological_process	cytoplasmic translation
AS	0003735	molecular_function	structural constituent of ribosome
AS	0005737	cellular_component	cytoplasm
AS	0005829	cellular_component	cytosol
AS	0006412	biological_process	translation
AS	0008073	molecular_function	ornithine decarboxylase inhibitor activity
AS	0015935	cellular_component	small ribosomal subunit
AS	0019843	molecular_function	rRNA binding
AS	0022627	cellular_component	cytosolic small ribosomal subunit
AS	0070181	molecular_function	small ribosomal subunit rRNA binding
AT	0000028	biological_process	ribosomal small subunit assembly
AT	0002181	biological_process	cytoplasmic translation
AT	0003735	molecular_function	structural constituent of ribosome
AT	0005737	cellular_component	cytoplasm
AT	0005829	cellular_component	cytosol
AT	0006412	biological_process	translation
AT	0022627	cellular_component	cytosolic small ribosomal subunit
F1	0003743	molecular_function	translation initiation factor activity
F1	0005515	molecular_function	protein binding
F1	0005737	cellular_component	cytoplasm
F1	0005829	cellular_component	cytosol
F1	0006413	biological_process	translational initiation
F1	0019843	molecular_function	rRNA binding
F1	0043022	molecular_function	ribosome binding
F3	0003743	molecular_function	translation initiation factor activity
F3	0005515	molecular_function	protein binding
F3	0005737	cellular_component	cytoplasm
F3	0005829	cellular_component	cytosol
F3	0006413	biological_process	translational initiation
F3	0009409	biological_process	response to cold
F3	0016020	cellular_component	membrane
F3	0032790	biological_process	ribosome disassembly
F3	0043022	molecular_function	ribosome binding

Functional Information from PROSITE/UniProt

site_id	PS00052
Number of Residues	27
Details	RIBOSOMAL_S7 Ribosomal protein S7 signature. SeLlakFVnilmvdGKKstaesIVysA

Chain	Residue	Details
AF	SER19-ALA45

site_id	PS00053
Number of Residues	18
Details	RIBOSOMAL_S8 Ribosomal protein S8 signature. GiaVVSTSkGVMtdraAR

Chain	Residue	Details
AG	GLY99-ARG116

site_id	PS00054
Number of Residues	23
Details	RIBOSOMAL_S11 Ribosomal protein S11 signature. IrALnaA.GFrItnitDvTPiPHN

Chain	Residue	Details
AJ	ILE96-ASN118

site_id	PS00055
Number of Residues	8
Details	RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR

Chain	Residue	Details
AK	LYS42-ARG49

site_id	PS00056
Number of Residues	13
Details	RIBOSOMAL_S17 Ribosomal protein S17 signature. GDvVeIrEcRPLS

Chain	Residue	Details
AP	GLY55-SER67

site_id	PS00057
Number of Residues	24
Details	RIBOSOMAL_S18 Ribosomal protein S18 signature. IDYkd.IatLknYITEs.GKIvpsRI

Chain	Residue	Details
AQ	ILE20-ILE43

site_id	PS00061
Number of Residues	29
Details	ADH_SHORT Short-chain dehydrogenases/reductases family signature. PdhkhavialTsiYGVGKTRSkAILaAAG

Chain	Residue	Details
AL	PRO9-GLY37

site_id	PS00323
Number of Residues	25
Details	RIBOSOMAL_S19 Ribosomal protein S19 signature. NGRqhvpvfVtdemVGhkLGEFapT

Chain	Residue	Details
AR	ASN52-THR76

site_id	PS00360
Number of Residues	19
Details	RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGisGQagAirhGiTRAL

Chain	Residue	Details
AH	GLY68-LEU86

site_id	PS00361
Number of Residues	16
Details	RIBOSOMAL_S10 Ribosomal protein S10 signature. AkrtGAqvrGPIpLPT

Chain	Residue	Details
AI	ALA29-THR44

site_id	PS00362
Number of Residues	31
Details	RIBOSOMAL_S15 Ribosomal protein S15 signature. LqgHFaehKkDhhSrrgLlrMvsqrrkLldY

Chain	Residue	Details
AN	LEU38-TYR68

site_id	PS00527
Number of Residues	23
Details	RIBOSOMAL_S14 Ribosomal protein S14 signature. R.CrqtgrphgflrkFGLSRiKVR

Chain	Residue	Details
AM	ARG62-ARG84

site_id	PS00548
Number of Residues	35
Details	RIBOSOMAL_S3 Ribosomal protein S3 signature. ARtewyreGrVplHt..LradIDyntseahTtyGviG

Chain	Residue	Details
AB	ALA162-GLY196

site_id	PS00585
Number of Residues	33
Details	RIBOSOMAL_S5 Ribosomal protein S5 signature. GRifsFtAltVVGDgn.GrVGfGygkar.EVpa.AI

Chain	Residue	Details
AD	GLY27-ILE59

site_id	PS00632
Number of Residues	25
Details	RIBOSOMAL_S4 Ribosomal protein S4 signature. LEgRLdnvVYRmgfGaTraeARqLV

Chain	Residue	Details
AC	LEU93-VAL117

site_id	PS00646
Number of Residues	14
Details	RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHrrGlpVRGQ

Chain	Residue	Details
AL	ARG86-GLN99

site_id	PS00732
Number of Residues	10
Details	RIBOSOMAL_S16 Ribosomal protein S16 signature. VtIRLARHGA

Chain	Residue	Details
AO	VAL2-ALA11

site_id	PS00938
Number of Residues	14
Details	IF3 Initiation factor 3 signature. RIMDYGKFlYEksK

Chain	Residue	Details
F3	ARG66-LYS79

site_id	PS00962
Number of Residues	12
Details	RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. MrDMLKAGVHFG

Chain	Residue	Details
AA	MET5-GLY16

site_id	PS00963
Number of Residues	25
Details	RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PdaLFViDadhEhiaIkEannlGIP

Chain	Residue	Details
AA	PRO157-PRO181

site_id	PS01048
Number of Residues	10
Details	RIBOSOMAL_S6 Ribosomal protein S6 signature. GrRQLAYpIN

Chain	Residue	Details
AE	GLY43-ASN52

site_id	PS01181
Number of Residues	13
Details	RIBOSOMAL_S21 Ribosomal protein S21 signature. DvALRRFKRsceK

Chain	Residue	Details
AT	ASP12-LYS24

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	1
Details	Modified residue: {"description":"N6-succinyllysine","evidences":[{"source":"PubMed","id":"21151122","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	68
Details	Domain: {"description":"KH type-2"}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	60
Details	Domain: {"description":"S4 RNA-binding"}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	63
Details	Domain: {"description":"S5 DRBM"}

Chain

Residue

Details

site_id	SWS_FT_FI5
Number of Residues	2
Details	Modified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"18723842","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI6
Number of Residues	1
Details	Modified residue: {"description":"3-methylthioaspartic acid","evidences":[{"source":"PubMed","id":"8844851","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

site_id	SWS_FT_FI7
Number of Residues	13
Details	Compositional bias: {"description":"Basic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

site_id	SWS_FT_FI8
Number of Residues	2
Details	Site: {"description":"Important for 30S binding","evidences":[{"source":"PubMed","id":"1457399","evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)