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9SOB

Structural Model of the Nuclear Pore Complex in Arabidopsis thaliana

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
40005515molecular_functionprotein binding
40005634cellular_componentnucleus
40005635cellular_componentnuclear envelope
40005643cellular_componentnuclear pore
40005783cellular_componentendoplasmic reticulum
40006913biological_processnucleocytoplasmic transport
40015031biological_processprotein transport
40051028biological_processmRNA transport
480005515molecular_functionprotein binding
480005634cellular_componentnucleus
480005635cellular_componentnuclear envelope
480005643cellular_componentnuclear pore
480005783cellular_componentendoplasmic reticulum
480006913biological_processnucleocytoplasmic transport
480015031biological_processprotein transport
480051028biological_processmRNA transport
A160005515molecular_functionprotein binding
A160005634cellular_componentnucleus
A160005635cellular_componentnuclear envelope
A160005643cellular_componentnuclear pore
A160005730cellular_componentnucleolus
A160006606biological_processprotein import into nucleus
A160009506cellular_componentplasmodesma
A160015031biological_processprotein transport
A160016973biological_processpoly(A)+ mRNA export from nucleus
A160017056molecular_functionstructural constituent of nuclear pore
A160051028biological_processmRNA transport
A240005515molecular_functionprotein binding
A240005634cellular_componentnucleus
A240005635cellular_componentnuclear envelope
A240005643cellular_componentnuclear pore
A240005730cellular_componentnucleolus
A240006606biological_processprotein import into nucleus
A240009506cellular_componentplasmodesma
A240015031biological_processprotein transport
A240016973biological_processpoly(A)+ mRNA export from nucleus
A240017056molecular_functionstructural constituent of nuclear pore
A240051028biological_processmRNA transport
A320005515molecular_functionprotein binding
A320005634cellular_componentnucleus
A320005635cellular_componentnuclear envelope
A320005643cellular_componentnuclear pore
A320005730cellular_componentnucleolus
A320006606biological_processprotein import into nucleus
A320009506cellular_componentplasmodesma
A320015031biological_processprotein transport
A320016973biological_processpoly(A)+ mRNA export from nucleus
A320017056molecular_functionstructural constituent of nuclear pore
A320051028biological_processmRNA transport
A400005515molecular_functionprotein binding
A400005634cellular_componentnucleus
A400005635cellular_componentnuclear envelope
A400005643cellular_componentnuclear pore
A400005730cellular_componentnucleolus
A400006606biological_processprotein import into nucleus
A400009506cellular_componentplasmodesma
A400015031biological_processprotein transport
A400016973biological_processpoly(A)+ mRNA export from nucleus
A400017056molecular_functionstructural constituent of nuclear pore
A400051028biological_processmRNA transport
B0005634cellular_componentnucleus
B0006405biological_processRNA export from nucleus
B0006606biological_processprotein import into nucleus
B0017056molecular_functionstructural constituent of nuclear pore
B0044611cellular_componentnuclear pore inner ring
B80005634cellular_componentnucleus
B80006405biological_processRNA export from nucleus
B80006606biological_processprotein import into nucleus
B80017056molecular_functionstructural constituent of nuclear pore
B80044611cellular_componentnuclear pore inner ring
C0005515molecular_functionprotein binding
C0005634cellular_componentnucleus
C0005635cellular_componentnuclear envelope
C0005643cellular_componentnuclear pore
C0009617biological_processresponse to bacterium
C0009682biological_processinduced systemic resistance
C0009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
C0015031biological_processprotein transport
C0032922biological_processcircadian regulation of gene expression
C0051028biological_processmRNA transport
C160005515molecular_functionprotein binding
C160005634cellular_componentnucleus
C160005635cellular_componentnuclear envelope
C160005643cellular_componentnuclear pore
C160009617biological_processresponse to bacterium
C160009682biological_processinduced systemic resistance
C160009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
C160015031biological_processprotein transport
C160032922biological_processcircadian regulation of gene expression
C160051028biological_processmRNA transport
C240005515molecular_functionprotein binding
C240005634cellular_componentnucleus
C240005635cellular_componentnuclear envelope
C240005643cellular_componentnuclear pore
C240009617biological_processresponse to bacterium
C240009682biological_processinduced systemic resistance
C240009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
C240015031biological_processprotein transport
C240032922biological_processcircadian regulation of gene expression
C240051028biological_processmRNA transport
C320005515molecular_functionprotein binding
C320005634cellular_componentnucleus
C320005635cellular_componentnuclear envelope
C320005643cellular_componentnuclear pore
C320009617biological_processresponse to bacterium
C320009682biological_processinduced systemic resistance
C320009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
C320015031biological_processprotein transport
C320032922biological_processcircadian regulation of gene expression
C320051028biological_processmRNA transport
C80005515molecular_functionprotein binding
C80005634cellular_componentnucleus
C80005635cellular_componentnuclear envelope
C80005643cellular_componentnuclear pore
C80009617biological_processresponse to bacterium
C80009682biological_processinduced systemic resistance
C80009862biological_processsystemic acquired resistance, salicylic acid mediated signaling pathway
C80015031biological_processprotein transport
C80032922biological_processcircadian regulation of gene expression
C80051028biological_processmRNA transport
D0000972biological_processtranscription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
D0005515molecular_functionprotein binding
D0005634cellular_componentnucleus
D0005635cellular_componentnuclear envelope
D0005643cellular_componentnuclear pore
D0005730cellular_componentnucleolus
D0005886cellular_componentplasma membrane
D0006405biological_processRNA export from nucleus
D0006606biological_processprotein import into nucleus
D0006913biological_processnucleocytoplasmic transport
D0009506cellular_componentplasmodesma
D0015031biological_processprotein transport
D0017056molecular_functionstructural constituent of nuclear pore
D0036228biological_processprotein localization to nuclear inner membrane
D0044611cellular_componentnuclear pore inner ring
D0051028biological_processmRNA transport
D160000972biological_processtranscription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
D160005515molecular_functionprotein binding
D160005634cellular_componentnucleus
D160005635cellular_componentnuclear envelope
D160005643cellular_componentnuclear pore
D160005730cellular_componentnucleolus
D160005886cellular_componentplasma membrane
D160006405biological_processRNA export from nucleus
D160006606biological_processprotein import into nucleus
D160006913biological_processnucleocytoplasmic transport
D160009506cellular_componentplasmodesma
D160015031biological_processprotein transport
D160017056molecular_functionstructural constituent of nuclear pore
D160036228biological_processprotein localization to nuclear inner membrane
D160044611cellular_componentnuclear pore inner ring
D160051028biological_processmRNA transport
D240000972biological_processtranscription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
D240005515molecular_functionprotein binding
D240005634cellular_componentnucleus
D240005635cellular_componentnuclear envelope
D240005643cellular_componentnuclear pore
D240005730cellular_componentnucleolus
D240005886cellular_componentplasma membrane
D240006405biological_processRNA export from nucleus
D240006606biological_processprotein import into nucleus
D240006913biological_processnucleocytoplasmic transport
D240009506cellular_componentplasmodesma
D240015031biological_processprotein transport
D240017056molecular_functionstructural constituent of nuclear pore
D240036228biological_processprotein localization to nuclear inner membrane
D240044611cellular_componentnuclear pore inner ring
D240051028biological_processmRNA transport
D320000972biological_processtranscription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
D320005515molecular_functionprotein binding
D320005634cellular_componentnucleus
D320005635cellular_componentnuclear envelope
D320005643cellular_componentnuclear pore
D320005730cellular_componentnucleolus
D320005886cellular_componentplasma membrane
D320006405biological_processRNA export from nucleus
D320006606biological_processprotein import into nucleus
D320006913biological_processnucleocytoplasmic transport
D320009506cellular_componentplasmodesma
D320015031biological_processprotein transport
D320017056molecular_functionstructural constituent of nuclear pore
D320036228biological_processprotein localization to nuclear inner membrane
D320044611cellular_componentnuclear pore inner ring
D320051028biological_processmRNA transport
D400000972biological_processtranscription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
D400005515molecular_functionprotein binding
D400005634cellular_componentnucleus
D400005635cellular_componentnuclear envelope
D400005643cellular_componentnuclear pore
D400005730cellular_componentnucleolus
D400005886cellular_componentplasma membrane
D400006405biological_processRNA export from nucleus
D400006606biological_processprotein import into nucleus
D400006913biological_processnucleocytoplasmic transport
D400009506cellular_componentplasmodesma
D400015031biological_processprotein transport
D400017056molecular_functionstructural constituent of nuclear pore
D400036228biological_processprotein localization to nuclear inner membrane
D400044611cellular_componentnuclear pore inner ring
D400051028biological_processmRNA transport
D80000972biological_processtranscription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery
D80005515molecular_functionprotein binding
D80005634cellular_componentnucleus
D80005635cellular_componentnuclear envelope
D80005643cellular_componentnuclear pore
D80005730cellular_componentnucleolus
D80005886cellular_componentplasma membrane
D80006405biological_processRNA export from nucleus
D80006606biological_processprotein import into nucleus
D80006913biological_processnucleocytoplasmic transport
D80009506cellular_componentplasmodesma
D80015031biological_processprotein transport
D80017056molecular_functionstructural constituent of nuclear pore
D80036228biological_processprotein localization to nuclear inner membrane
D80044611cellular_componentnuclear pore inner ring
D80051028biological_processmRNA transport
E0005643cellular_componentnuclear pore
E0006999biological_processnuclear pore organization
E0009507cellular_componentchloroplast
E0015031biological_processprotein transport
E0030674molecular_functionprotein-macromolecule adaptor activity
E0031965cellular_componentnuclear membrane
E0051028biological_processmRNA transport
E0070762cellular_componentnuclear pore transmembrane ring
E80005643cellular_componentnuclear pore
E80006999biological_processnuclear pore organization
E80009507cellular_componentchloroplast
E80015031biological_processprotein transport
E80030674molecular_functionprotein-macromolecule adaptor activity
E80031965cellular_componentnuclear membrane
E80051028biological_processmRNA transport
E80070762cellular_componentnuclear pore transmembrane ring
N0005198molecular_functionstructural molecule activity
N0005515molecular_functionprotein binding
N0005634cellular_componentnucleus
N0005635cellular_componentnuclear envelope
N0005643cellular_componentnuclear pore
N0005730cellular_componentnucleolus
N0005737cellular_componentcytoplasm
N0005783cellular_componentendoplasmic reticulum
N0005794cellular_componentGolgi apparatus
N0005829cellular_componentcytosol
N0006606biological_processprotein import into nucleus
N0015031biological_processprotein transport
N0016192biological_processvesicle-mediated transport
N0030127cellular_componentCOPII vesicle coat
N0031080cellular_componentnuclear pore outer ring
N0051028biological_processmRNA transport
N0090114biological_processCOPII-coated vesicle budding
N160005198molecular_functionstructural molecule activity
N160005515molecular_functionprotein binding
N160005634cellular_componentnucleus
N160005635cellular_componentnuclear envelope
N160005643cellular_componentnuclear pore
N160005730cellular_componentnucleolus
N160005737cellular_componentcytoplasm
N160005783cellular_componentendoplasmic reticulum
N160005794cellular_componentGolgi apparatus
N160005829cellular_componentcytosol
N160006606biological_processprotein import into nucleus
N160015031biological_processprotein transport
N160016192biological_processvesicle-mediated transport
N160030127cellular_componentCOPII vesicle coat
N160031080cellular_componentnuclear pore outer ring
N160051028biological_processmRNA transport
N160090114biological_processCOPII-coated vesicle budding
N80005198molecular_functionstructural molecule activity
N80005515molecular_functionprotein binding
N80005634cellular_componentnucleus
N80005635cellular_componentnuclear envelope
N80005643cellular_componentnuclear pore
N80005730cellular_componentnucleolus
N80005737cellular_componentcytoplasm
N80005783cellular_componentendoplasmic reticulum
N80005794cellular_componentGolgi apparatus
N80005829cellular_componentcytosol
N80006606biological_processprotein import into nucleus
N80015031biological_processprotein transport
N80016192biological_processvesicle-mediated transport
N80030127cellular_componentCOPII vesicle coat
N80031080cellular_componentnuclear pore outer ring
N80051028biological_processmRNA transport
N80090114biological_processCOPII-coated vesicle budding
O0005515molecular_functionprotein binding
O0005634cellular_componentnucleus
O0005635cellular_componentnuclear envelope
O0005643cellular_componentnuclear pore
O0005737cellular_componentcytoplasm
O0009507cellular_componentchloroplast
O0015031biological_processprotein transport
O0031080cellular_componentnuclear pore outer ring
O0034198biological_processcellular response to amino acid starvation
O0035859cellular_componentSeh1-associated complex
O0051028biological_processmRNA transport
O1904263biological_processpositive regulation of TORC1 signaling
O160005515molecular_functionprotein binding
O160005634cellular_componentnucleus
O160005635cellular_componentnuclear envelope
O160005643cellular_componentnuclear pore
O160005737cellular_componentcytoplasm
O160009507cellular_componentchloroplast
O160015031biological_processprotein transport
O160031080cellular_componentnuclear pore outer ring
O160034198biological_processcellular response to amino acid starvation
O160035859cellular_componentSeh1-associated complex
O160051028biological_processmRNA transport
O161904263biological_processpositive regulation of TORC1 signaling
O80005515molecular_functionprotein binding
O80005634cellular_componentnucleus
O80005635cellular_componentnuclear envelope
O80005643cellular_componentnuclear pore
O80005737cellular_componentcytoplasm
O80009507cellular_componentchloroplast
O80015031biological_processprotein transport
O80031080cellular_componentnuclear pore outer ring
O80034198biological_processcellular response to amino acid starvation
O80035859cellular_componentSeh1-associated complex
O80051028biological_processmRNA transport
O81904263biological_processpositive regulation of TORC1 signaling
P0005515molecular_functionprotein binding
P0005634cellular_componentnucleus
P0005635cellular_componentnuclear envelope
P0005643cellular_componentnuclear pore
P0006406biological_processmRNA export from nucleus
P0006606biological_processprotein import into nucleus
P0009737biological_processresponse to abscisic acid
P0015031biological_processprotein transport
P0017056molecular_functionstructural constituent of nuclear pore
P0031080cellular_componentnuclear pore outer ring
P0045893biological_processpositive regulation of DNA-templated transcription
P0051028biological_processmRNA transport
P160005515molecular_functionprotein binding
P160005634cellular_componentnucleus
P160005635cellular_componentnuclear envelope
P160005643cellular_componentnuclear pore
P160006406biological_processmRNA export from nucleus
P160006606biological_processprotein import into nucleus
P160009737biological_processresponse to abscisic acid
P160015031biological_processprotein transport
P160017056molecular_functionstructural constituent of nuclear pore
P160031080cellular_componentnuclear pore outer ring
P160045893biological_processpositive regulation of DNA-templated transcription
P160051028biological_processmRNA transport
P80005515molecular_functionprotein binding
P80005634cellular_componentnucleus
P80005635cellular_componentnuclear envelope
P80005643cellular_componentnuclear pore
P80006406biological_processmRNA export from nucleus
P80006606biological_processprotein import into nucleus
P80009737biological_processresponse to abscisic acid
P80015031biological_processprotein transport
P80017056molecular_functionstructural constituent of nuclear pore
P80031080cellular_componentnuclear pore outer ring
P80045893biological_processpositive regulation of DNA-templated transcription
P80051028biological_processmRNA transport
Q0005515molecular_functionprotein binding
Q0005634cellular_componentnucleus
Q0005635cellular_componentnuclear envelope
Q0005643cellular_componentnuclear pore
Q0015031biological_processprotein transport
Q0031080cellular_componentnuclear pore outer ring
Q0051028biological_processmRNA transport
Q160005515molecular_functionprotein binding
Q160005634cellular_componentnucleus
Q160005635cellular_componentnuclear envelope
Q160005643cellular_componentnuclear pore
Q160015031biological_processprotein transport
Q160031080cellular_componentnuclear pore outer ring
Q160051028biological_processmRNA transport
Q80005515molecular_functionprotein binding
Q80005634cellular_componentnucleus
Q80005635cellular_componentnuclear envelope
Q80005643cellular_componentnuclear pore
Q80015031biological_processprotein transport
Q80031080cellular_componentnuclear pore outer ring
Q80051028biological_processmRNA transport
R0005515molecular_functionprotein binding
R0005634cellular_componentnucleus
R0005635cellular_componentnuclear envelope
R0005643cellular_componentnuclear pore
R0006913biological_processnucleocytoplasmic transport
R0006952biological_processdefense response
R0009409biological_processresponse to cold
R0009733biological_processresponse to auxin
R0015031biological_processprotein transport
R0016973biological_processpoly(A)+ mRNA export from nucleus
R0017056molecular_functionstructural constituent of nuclear pore
R0031965cellular_componentnuclear membrane
R0032502biological_processdevelopmental process
R0048510biological_processregulation of timing of transition from vegetative to reproductive phase
R0051028biological_processmRNA transport
R160005515molecular_functionprotein binding
R160005634cellular_componentnucleus
R160005635cellular_componentnuclear envelope
R160005643cellular_componentnuclear pore
R160006913biological_processnucleocytoplasmic transport
R160006952biological_processdefense response
R160009409biological_processresponse to cold
R160009733biological_processresponse to auxin
R160015031biological_processprotein transport
R160016973biological_processpoly(A)+ mRNA export from nucleus
R160017056molecular_functionstructural constituent of nuclear pore
R160031965cellular_componentnuclear membrane
R160032502biological_processdevelopmental process
R160048510biological_processregulation of timing of transition from vegetative to reproductive phase
R160051028biological_processmRNA transport
R80005515molecular_functionprotein binding
R80005634cellular_componentnucleus
R80005635cellular_componentnuclear envelope
R80005643cellular_componentnuclear pore
R80006913biological_processnucleocytoplasmic transport
R80006952biological_processdefense response
R80009409biological_processresponse to cold
R80009733biological_processresponse to auxin
R80015031biological_processprotein transport
R80016973biological_processpoly(A)+ mRNA export from nucleus
R80017056molecular_functionstructural constituent of nuclear pore
R80031965cellular_componentnuclear membrane
R80032502biological_processdevelopmental process
R80048510biological_processregulation of timing of transition from vegetative to reproductive phase
R80051028biological_processmRNA transport
W0000055biological_processribosomal large subunit export from nucleus
W0000056biological_processribosomal small subunit export from nucleus
W0005515molecular_functionprotein binding
W0005634cellular_componentnucleus
W0005635cellular_componentnuclear envelope
W0005643cellular_componentnuclear pore
W0006406biological_processmRNA export from nucleus
W0006606biological_processprotein import into nucleus
W0006611biological_processprotein export from nucleus
W0009627biological_processsystemic acquired resistance
W0015031biological_processprotein transport
W0045087biological_processinnate immune response
W0051028biological_processmRNA transport
Functional Information from PROSITE/UniProt
site_idPS00063
Number of Residues16
DetailsALDOKETO_REDUCTASE_3 Aldo/keto reductase family putative active site signature. LIKSLEicRLyELsNV
ChainResidueDetails
PLEU509-VAL524

site_idPS00616
Number of Residues15
DetailsHIS_ACID_PHOSPHAT_1 Histidine acid phosphatases phosphohistidine signature. LlyAyeMrRHNwRmA
ChainResidueDetails
RLEU1113-ALA1127

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsModified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"19245862","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"19376835","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues439
DetailsRepeat: {"description":"WD 1","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues438
DetailsRepeat: {"description":"WD 2","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues446
DetailsRepeat: {"description":"WD 3","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues237
DetailsRepeat: {"description":"WD 4","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues246
DetailsRepeat: {"description":"WD 5","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues117
DetailsRepeat: {"description":"WD 6","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues120
DetailsZinc finger: {"description":"RING-type; degenerate"}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues128
DetailsRegion: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails

site_idSWS_FT_FI10
Number of Residues581
DetailsCoiled coil: {"evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI12
Number of Residues36
DetailsCompositional bias: {"description":"Basic and acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails

site_idSWS_FT_FI13
Number of Residues6
DetailsModified residue: {"description":"N-acetylserine","evidences":[{"source":"PubMed","id":"22223895","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

248335

PDB entries from 2026-01-28

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