Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

9SDQ

Cryo-EM structure of the Arabidopsis thaliana 40S ribosomal subunit (Head)

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
Bc	0000028	biological_process	ribosomal small subunit assembly
Bc	0003729	molecular_function	mRNA binding
Bc	0003735	molecular_function	structural constituent of ribosome
Bc	0005737	cellular_component	cytoplasm
Bc	0009536	cellular_component	plastid
Bc	0022626	cellular_component	cytosolic ribosome
Bc	0022627	cellular_component	cytosolic small ribosomal subunit
Bc	0030490	biological_process	maturation of SSU-rRNA
BD	0000325	cellular_component	plant-type vacuole
BD	0003729	molecular_function	mRNA binding
BD	0003735	molecular_function	structural constituent of ribosome
BD	0005634	cellular_component	nucleus
BD	0005777	cellular_component	peroxisome
BD	0005794	cellular_component	Golgi apparatus
BD	0009506	cellular_component	plasmodesma
BD	0009507	cellular_component	chloroplast
BD	0022626	cellular_component	cytosolic ribosome
BD	0022627	cellular_component	cytosolic small ribosomal subunit
BF	0000325	cellular_component	plant-type vacuole
BF	0003729	molecular_function	mRNA binding
BF	0003735	molecular_function	structural constituent of ribosome
BF	0005737	cellular_component	cytoplasm
BF	0005783	cellular_component	endoplasmic reticulum
BF	0005840	cellular_component	ribosome
BF	0006412	biological_process	translation
BF	0009505	cellular_component	plant-type cell wall
BF	0009506	cellular_component	plasmodesma
BF	0009507	cellular_component	chloroplast
BF	0019843	molecular_function	rRNA binding
BF	0022626	cellular_component	cytosolic ribosome
BF	0022627	cellular_component	cytosolic small ribosomal subunit
BK	0003723	molecular_function	RNA binding
BK	0003729	molecular_function	mRNA binding
BK	0003735	molecular_function	structural constituent of ribosome
BK	0005515	molecular_function	protein binding
BK	0005737	cellular_component	cytoplasm
BK	0005829	cellular_component	cytosol
BK	0009505	cellular_component	plant-type cell wall
BK	0009536	cellular_component	plastid
BK	0022626	cellular_component	cytosolic ribosome
BK	0022627	cellular_component	cytosolic small ribosomal subunit
BP	0000325	cellular_component	plant-type vacuole
BP	0003729	molecular_function	mRNA binding
BP	0003735	molecular_function	structural constituent of ribosome
BP	0005730	cellular_component	nucleolus
BP	0005737	cellular_component	cytoplasm
BP	0005794	cellular_component	Golgi apparatus
BP	0005829	cellular_component	cytosol
BP	0005886	cellular_component	plasma membrane
BP	0009506	cellular_component	plasmodesma
BP	0009507	cellular_component	chloroplast
BP	0022626	cellular_component	cytosolic ribosome
BP	0022627	cellular_component	cytosolic small ribosomal subunit
BQ	0000462	biological_process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
BQ	0003723	molecular_function	RNA binding
BQ	0003729	molecular_function	mRNA binding
BQ	0003735	molecular_function	structural constituent of ribosome
BQ	0005737	cellular_component	cytoplasm
BQ	0005739	cellular_component	mitochondrion
BQ	0005794	cellular_component	Golgi apparatus
BQ	0009505	cellular_component	plant-type cell wall
BQ	0009506	cellular_component	plasmodesma
BQ	0009507	cellular_component	chloroplast
BQ	0022626	cellular_component	cytosolic ribosome
BQ	0022627	cellular_component	cytosolic small ribosomal subunit
BR	0003729	molecular_function	mRNA binding
BR	0003735	molecular_function	structural constituent of ribosome
BR	0005737	cellular_component	cytoplasm
BR	0005794	cellular_component	Golgi apparatus
BR	0005829	cellular_component	cytosol
BR	0005886	cellular_component	plasma membrane
BR	0022627	cellular_component	cytosolic small ribosomal subunit
BS	0000325	cellular_component	plant-type vacuole
BS	0003729	molecular_function	mRNA binding
BS	0003735	molecular_function	structural constituent of ribosome
BS	0005515	molecular_function	protein binding
BS	0005634	cellular_component	nucleus
BS	0005730	cellular_component	nucleolus
BS	0005737	cellular_component	cytoplasm
BS	0005794	cellular_component	Golgi apparatus
BS	0005829	cellular_component	cytosol
BS	0005886	cellular_component	plasma membrane
BS	0006413	biological_process	translational initiation
BS	0008150	biological_process	biological_process
BS	0009505	cellular_component	plant-type cell wall
BS	0009506	cellular_component	plasmodesma
BS	0015935	cellular_component	small ribosomal subunit
BS	0022626	cellular_component	cytosolic ribosome
BS	0022627	cellular_component	cytosolic small ribosomal subunit
BT	0000325	cellular_component	plant-type vacuole
BT	0003729	molecular_function	mRNA binding
BT	0003735	molecular_function	structural constituent of ribosome
BT	0005634	cellular_component	nucleus
BT	0009536	cellular_component	plastid
BT	0022626	cellular_component	cytosolic ribosome
BT	0022627	cellular_component	cytosolic small ribosomal subunit
BT	0030490	biological_process	maturation of SSU-rRNA
BT	0042742	biological_process	defense response to bacterium
BU	0003729	molecular_function	mRNA binding
BU	0003735	molecular_function	structural constituent of ribosome
BU	0005794	cellular_component	Golgi apparatus
BU	0005829	cellular_component	cytosol
BU	0008150	biological_process	biological_process
BU	0009505	cellular_component	plant-type cell wall
BU	0009507	cellular_component	chloroplast
BU	0009536	cellular_component	plastid
BU	0022627	cellular_component	cytosolic small ribosomal subunit
d	0002181	biological_process	cytoplasmic translation
d	0003674	molecular_function	molecular_function
d	0003735	molecular_function	structural constituent of ribosome
d	0005829	cellular_component	cytosol
d	0005886	cellular_component	plasma membrane
d	0008150	biological_process	biological_process
d	0008270	molecular_function	zinc ion binding
d	0022627	cellular_component	cytosolic small ribosomal subunit
e	0000325	cellular_component	plant-type vacuole
e	0003729	molecular_function	mRNA binding
e	0003735	molecular_function	structural constituent of ribosome
e	0005737	cellular_component	cytoplasm
e	0005773	cellular_component	vacuole
e	0005794	cellular_component	Golgi apparatus
e	0009506	cellular_component	plasmodesma
e	0022626	cellular_component	cytosolic ribosome
e	0022627	cellular_component	cytosolic small ribosomal subunit

Functional Information from PROSITE/UniProt

site_id	PS00052
Number of Residues	27
Details	RIBOSOMAL_S7 Ribosomal protein S7 signature. ErLtnsLMmhgrnnGKKlmavrIVkhA

Chain	Residue	Details
BF	GLU73-ALA99

site_id	PS00323
Number of Residues	25
Details	RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKtfnqveIkpemIGhyLAEFsiS

Chain	Residue	Details
BP	ASN105-SER129

site_id	PS00360
Number of Residues	19
Details	RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGhtSQvyAirqSiAKAL

Chain	Residue	Details
BQ	GLY74-LEU92

site_id	PS00361
Number of Residues	16
Details	RIBOSOMAL_S10 Ribosomal protein S10 signature. AkdkRLrvkGPVrMPT

Chain	Residue	Details
BU	ALA48-THR63

site_id	PS00628
Number of Residues	20
Details	RIBOSOMAL_S19E Ribosomal protein S19e signature. PphfcksSggVaRhILQqLQ

Chain	Residue	Details
BT	PRO90-GLN109

site_id	PS00646
Number of Residues	14
Details	RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHywGlrVRGQ

Chain	Residue	Details
BS	ARG121-GLN134

site_id	PS00712
Number of Residues	16
Details	RIBOSOMAL_S17E Ribosomal protein S17e signature. IpSKrLRNkIAGFsTH

Chain	Residue	Details
BR	ILE41-HIS56

site_id	PS00961
Number of Residues	9
Details	RIBOSOMAL_S28E Ribosomal protein S28e signature. ESEREARrL

Chain	Residue	Details
Bc	GLU55-LEU63

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	71
Details	Domain: {"description":"KH type-2","evidences":[{"source":"PROSITE-ProRule","id":"PRU00118","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	4
Details	Binding site: {"evidences":[{"evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)