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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9QGY

Structure of the YbjP lipoprotein bound to the MacAB-TolC tripartite efflux pump

Functional Information from GO Data
ChainGOidnamespacecontents
A0005216molecular_functionmonoatomic ion channel activity
A0005515molecular_functionprotein binding
A0009279cellular_componentcell outer membrane
A0009410biological_processresponse to xenobiotic stimulus
A0009636biological_processresponse to toxic substance
A0015125molecular_functionbile acid transmembrane transporter activity
A0015288molecular_functionporin activity
A0015562molecular_functionefflux transmembrane transporter activity
A0015721biological_processbile acid and bile salt transport
A0016020cellular_componentmembrane
A0034220biological_processmonoatomic ion transmembrane transport
A0042802molecular_functionidentical protein binding
A0042930biological_processenterobactin transport
A0042931molecular_functionenterobactin transmembrane transporter activity
A0046677biological_processresponse to antibiotic
A0098567cellular_componentperiplasmic side of plasma membrane
A0140330biological_processxenobiotic detoxification by transmembrane export across the cell outer membrane
A1990196cellular_componentMacAB-TolC complex
A1990281cellular_componentefflux pump complex
A1990961biological_processxenobiotic detoxification by transmembrane export across the plasma membrane
B0005216molecular_functionmonoatomic ion channel activity
B0005515molecular_functionprotein binding
B0009279cellular_componentcell outer membrane
B0009410biological_processresponse to xenobiotic stimulus
B0009636biological_processresponse to toxic substance
B0015125molecular_functionbile acid transmembrane transporter activity
B0015288molecular_functionporin activity
B0015562molecular_functionefflux transmembrane transporter activity
B0015721biological_processbile acid and bile salt transport
B0016020cellular_componentmembrane
B0034220biological_processmonoatomic ion transmembrane transport
B0042802molecular_functionidentical protein binding
B0042930biological_processenterobactin transport
B0042931molecular_functionenterobactin transmembrane transporter activity
B0046677biological_processresponse to antibiotic
B0098567cellular_componentperiplasmic side of plasma membrane
B0140330biological_processxenobiotic detoxification by transmembrane export across the cell outer membrane
B1990196cellular_componentMacAB-TolC complex
B1990281cellular_componentefflux pump complex
B1990961biological_processxenobiotic detoxification by transmembrane export across the plasma membrane
C0005216molecular_functionmonoatomic ion channel activity
C0005515molecular_functionprotein binding
C0009279cellular_componentcell outer membrane
C0009410biological_processresponse to xenobiotic stimulus
C0009636biological_processresponse to toxic substance
C0015125molecular_functionbile acid transmembrane transporter activity
C0015288molecular_functionporin activity
C0015562molecular_functionefflux transmembrane transporter activity
C0015721biological_processbile acid and bile salt transport
C0016020cellular_componentmembrane
C0034220biological_processmonoatomic ion transmembrane transport
C0042802molecular_functionidentical protein binding
C0042930biological_processenterobactin transport
C0042931molecular_functionenterobactin transmembrane transporter activity
C0046677biological_processresponse to antibiotic
C0098567cellular_componentperiplasmic side of plasma membrane
C0140330biological_processxenobiotic detoxification by transmembrane export across the cell outer membrane
C1990196cellular_componentMacAB-TolC complex
C1990281cellular_componentefflux pump complex
C1990961biological_processxenobiotic detoxification by transmembrane export across the plasma membrane
D0005886cellular_componentplasma membrane
E0005886cellular_componentplasma membrane
F0005886cellular_componentplasma membrane
G0005515molecular_functionprotein binding
G0005886cellular_componentplasma membrane
G0015562molecular_functionefflux transmembrane transporter activity
G0016020cellular_componentmembrane
G0019898cellular_componentextrinsic component of membrane
G0042802molecular_functionidentical protein binding
G0042893biological_processpolymyxin transport
G0042897molecular_functionpolymyxin transmembrane transporter activity
G0042908biological_processxenobiotic transport
G0055085biological_processtransmembrane transport
G1990196cellular_componentMacAB-TolC complex
G1990281cellular_componentefflux pump complex
G1990961biological_processxenobiotic detoxification by transmembrane export across the plasma membrane
H0005515molecular_functionprotein binding
H0005886cellular_componentplasma membrane
H0015562molecular_functionefflux transmembrane transporter activity
H0016020cellular_componentmembrane
H0019898cellular_componentextrinsic component of membrane
H0042802molecular_functionidentical protein binding
H0042893biological_processpolymyxin transport
H0042897molecular_functionpolymyxin transmembrane transporter activity
H0042908biological_processxenobiotic transport
H0055085biological_processtransmembrane transport
H1990196cellular_componentMacAB-TolC complex
H1990281cellular_componentefflux pump complex
H1990961biological_processxenobiotic detoxification by transmembrane export across the plasma membrane
I0005515molecular_functionprotein binding
I0005886cellular_componentplasma membrane
I0015562molecular_functionefflux transmembrane transporter activity
I0016020cellular_componentmembrane
I0019898cellular_componentextrinsic component of membrane
I0042802molecular_functionidentical protein binding
I0042893biological_processpolymyxin transport
I0042897molecular_functionpolymyxin transmembrane transporter activity
I0042908biological_processxenobiotic transport
I0055085biological_processtransmembrane transport
I1990196cellular_componentMacAB-TolC complex
I1990281cellular_componentefflux pump complex
I1990961biological_processxenobiotic detoxification by transmembrane export across the plasma membrane
J0005515molecular_functionprotein binding
J0005886cellular_componentplasma membrane
J0015562molecular_functionefflux transmembrane transporter activity
J0016020cellular_componentmembrane
J0019898cellular_componentextrinsic component of membrane
J0042802molecular_functionidentical protein binding
J0042893biological_processpolymyxin transport
J0042897molecular_functionpolymyxin transmembrane transporter activity
J0042908biological_processxenobiotic transport
J0055085biological_processtransmembrane transport
J1990196cellular_componentMacAB-TolC complex
J1990281cellular_componentefflux pump complex
J1990961biological_processxenobiotic detoxification by transmembrane export across the plasma membrane
K0005515molecular_functionprotein binding
K0005886cellular_componentplasma membrane
K0015562molecular_functionefflux transmembrane transporter activity
K0016020cellular_componentmembrane
K0019898cellular_componentextrinsic component of membrane
K0042802molecular_functionidentical protein binding
K0042893biological_processpolymyxin transport
K0042897molecular_functionpolymyxin transmembrane transporter activity
K0042908biological_processxenobiotic transport
K0055085biological_processtransmembrane transport
K1990196cellular_componentMacAB-TolC complex
K1990281cellular_componentefflux pump complex
K1990961biological_processxenobiotic detoxification by transmembrane export across the plasma membrane
L0005515molecular_functionprotein binding
L0005886cellular_componentplasma membrane
L0015562molecular_functionefflux transmembrane transporter activity
L0016020cellular_componentmembrane
L0019898cellular_componentextrinsic component of membrane
L0042802molecular_functionidentical protein binding
L0042893biological_processpolymyxin transport
L0042897molecular_functionpolymyxin transmembrane transporter activity
L0042908biological_processxenobiotic transport
L0055085biological_processtransmembrane transport
L1990196cellular_componentMacAB-TolC complex
L1990281cellular_componentefflux pump complex
L1990961biological_processxenobiotic detoxification by transmembrane export across the plasma membrane
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues630
DetailsTopological domain: {"description":"Periplasmic","evidences":[{"source":"PubMed","id":"18406332","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2VDD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2VDE","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI2
Number of Residues33
DetailsTransmembrane: {"description":"Beta stranded; Name=S1","evidences":[{"source":"PubMed","id":"18406332","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2VDD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2VDE","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI3
Number of Residues81
DetailsTopological domain: {"description":"Extracellular","evidences":[{"source":"PubMed","id":"18406332","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2VDD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2VDE","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI4
Number of Residues39
DetailsTransmembrane: {"description":"Beta stranded; Name=S2","evidences":[{"source":"PubMed","id":"18406332","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2VDD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2VDE","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI5
Number of Residues30
DetailsTransmembrane: {"description":"Beta stranded; Name=S4","evidences":[{"source":"PubMed","id":"18406332","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2VDD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2VDE","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI6
Number of Residues30
DetailsTransmembrane: {"description":"Beta stranded; Name=S5","evidences":[{"source":"PubMed","id":"18406332","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"2VDD","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2VDE","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI7
Number of Residues84
DetailsRegion: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails
site_idSWS_FT_FI8
Number of Residues45
DetailsCompositional bias: {"description":"Polar residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails
site_idSWS_FT_FI9
Number of Residues3
DetailsLipidation: {"description":"S-diacylglycerol cysteine","evidences":[{"source":"PROSITE-ProRule","id":"PRU00303","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI10
Number of Residues2034
DetailsTopological domain: {"description":"Periplasmic","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI11
Number of Residues270
DetailsCoiled coil: {"evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

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PDB entries from 2026-05-27

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