Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

9PHW

Structure of the D1-Val185Asn mutated photosystem II complex with slow O-O bond formation reveals changes in the Cl1 water channel

Functional Information from GO Data

Chain	GOid	namespace	contents
a	0005506	molecular_function	iron ion binding
a	0009055	molecular_function	electron transfer activity
a	0009523	cellular_component	photosystem II
a	0009635	biological_process	response to herbicide
a	0010242	molecular_function	oxygen evolving activity
a	0015979	biological_process	photosynthesis
a	0016168	molecular_function	chlorophyll binding
a	0016491	molecular_function	oxidoreductase activity
a	0016682	molecular_function	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
a	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
a	0031676	cellular_component	plasma membrane-derived thylakoid membrane
a	0042651	cellular_component	thylakoid membrane
a	0046872	molecular_function	metal ion binding
A	0005506	molecular_function	iron ion binding
A	0009055	molecular_function	electron transfer activity
A	0009523	cellular_component	photosystem II
A	0009635	biological_process	response to herbicide
A	0010242	molecular_function	oxygen evolving activity
A	0015979	biological_process	photosynthesis
A	0016168	molecular_function	chlorophyll binding
A	0016491	molecular_function	oxidoreductase activity
A	0016682	molecular_function	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
A	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
A	0031676	cellular_component	plasma membrane-derived thylakoid membrane
A	0042651	cellular_component	thylakoid membrane
A	0046872	molecular_function	metal ion binding
b	0009523	cellular_component	photosystem II
b	0009579	cellular_component	thylakoid
b	0015979	biological_process	photosynthesis
b	0016168	molecular_function	chlorophyll binding
b	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
b	0031676	cellular_component	plasma membrane-derived thylakoid membrane
b	0042651	cellular_component	thylakoid membrane
B	0009523	cellular_component	photosystem II
B	0009579	cellular_component	thylakoid
B	0015979	biological_process	photosynthesis
B	0016168	molecular_function	chlorophyll binding
B	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
B	0031676	cellular_component	plasma membrane-derived thylakoid membrane
B	0042651	cellular_component	thylakoid membrane
c	0005737	cellular_component	cytoplasm
c	0009523	cellular_component	photosystem II
c	0009579	cellular_component	thylakoid
c	0015979	biological_process	photosynthesis
c	0016168	molecular_function	chlorophyll binding
c	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
c	0031676	cellular_component	plasma membrane-derived thylakoid membrane
c	0042651	cellular_component	thylakoid membrane
c	0046872	molecular_function	metal ion binding
C	0005737	cellular_component	cytoplasm
C	0009523	cellular_component	photosystem II
C	0009579	cellular_component	thylakoid
C	0015979	biological_process	photosynthesis
C	0016168	molecular_function	chlorophyll binding
C	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
C	0031676	cellular_component	plasma membrane-derived thylakoid membrane
C	0042651	cellular_component	thylakoid membrane
C	0046872	molecular_function	metal ion binding
d	0005506	molecular_function	iron ion binding
d	0005737	cellular_component	cytoplasm
d	0009055	molecular_function	electron transfer activity
d	0009523	cellular_component	photosystem II
d	0010242	molecular_function	oxygen evolving activity
d	0015979	biological_process	photosynthesis
d	0016168	molecular_function	chlorophyll binding
d	0016491	molecular_function	oxidoreductase activity
d	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
d	0031676	cellular_component	plasma membrane-derived thylakoid membrane
d	0042651	cellular_component	thylakoid membrane
d	0046872	molecular_function	metal ion binding
D	0005506	molecular_function	iron ion binding
D	0005737	cellular_component	cytoplasm
D	0009055	molecular_function	electron transfer activity
D	0009523	cellular_component	photosystem II
D	0010242	molecular_function	oxygen evolving activity
D	0015979	biological_process	photosynthesis
D	0016168	molecular_function	chlorophyll binding
D	0016491	molecular_function	oxidoreductase activity
D	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
D	0031676	cellular_component	plasma membrane-derived thylakoid membrane
D	0042651	cellular_component	thylakoid membrane
D	0046872	molecular_function	metal ion binding
e	0005506	molecular_function	iron ion binding
e	0005737	cellular_component	cytoplasm
e	0009055	molecular_function	electron transfer activity
e	0009523	cellular_component	photosystem II
e	0009579	cellular_component	thylakoid
e	0015979	biological_process	photosynthesis
e	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
e	0031676	cellular_component	plasma membrane-derived thylakoid membrane
e	0042651	cellular_component	thylakoid membrane
e	0046872	molecular_function	metal ion binding
E	0005506	molecular_function	iron ion binding
E	0005737	cellular_component	cytoplasm
E	0009055	molecular_function	electron transfer activity
E	0009523	cellular_component	photosystem II
E	0009579	cellular_component	thylakoid
E	0015979	biological_process	photosynthesis
E	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
E	0031676	cellular_component	plasma membrane-derived thylakoid membrane
E	0042651	cellular_component	thylakoid membrane
E	0046872	molecular_function	metal ion binding
f	0005506	molecular_function	iron ion binding
f	0005737	cellular_component	cytoplasm
f	0009055	molecular_function	electron transfer activity
f	0009523	cellular_component	photosystem II
f	0009579	cellular_component	thylakoid
f	0015979	biological_process	photosynthesis
f	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
f	0031676	cellular_component	plasma membrane-derived thylakoid membrane
f	0042651	cellular_component	thylakoid membrane
f	0042802	molecular_function	identical protein binding
f	0046872	molecular_function	metal ion binding
F	0005506	molecular_function	iron ion binding
F	0005737	cellular_component	cytoplasm
F	0009055	molecular_function	electron transfer activity
F	0009523	cellular_component	photosystem II
F	0009579	cellular_component	thylakoid
F	0015979	biological_process	photosynthesis
F	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
F	0031676	cellular_component	plasma membrane-derived thylakoid membrane
F	0042651	cellular_component	thylakoid membrane
F	0042802	molecular_function	identical protein binding
F	0046872	molecular_function	metal ion binding
h	0009523	cellular_component	photosystem II
h	0015979	biological_process	photosynthesis
h	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
h	0031676	cellular_component	plasma membrane-derived thylakoid membrane
h	0042651	cellular_component	thylakoid membrane
H	0009523	cellular_component	photosystem II
H	0015979	biological_process	photosynthesis
H	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
H	0031676	cellular_component	plasma membrane-derived thylakoid membrane
H	0042651	cellular_component	thylakoid membrane
i	0005737	cellular_component	cytoplasm
i	0009523	cellular_component	photosystem II
i	0015979	biological_process	photosynthesis
i	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
i	0031676	cellular_component	plasma membrane-derived thylakoid membrane
i	0042651	cellular_component	thylakoid membrane
I	0005737	cellular_component	cytoplasm
I	0009523	cellular_component	photosystem II
I	0015979	biological_process	photosynthesis
I	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
I	0031676	cellular_component	plasma membrane-derived thylakoid membrane
I	0042651	cellular_component	thylakoid membrane
j	0009523	cellular_component	photosystem II
j	0015979	biological_process	photosynthesis
j	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
j	0031676	cellular_component	plasma membrane-derived thylakoid membrane
j	0042651	cellular_component	thylakoid membrane
J	0009523	cellular_component	photosystem II
J	0015979	biological_process	photosynthesis
J	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
J	0031676	cellular_component	plasma membrane-derived thylakoid membrane
J	0042651	cellular_component	thylakoid membrane
k	0005737	cellular_component	cytoplasm
k	0009523	cellular_component	photosystem II
k	0015979	biological_process	photosynthesis
k	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
k	0031676	cellular_component	plasma membrane-derived thylakoid membrane
k	0042651	cellular_component	thylakoid membrane
K	0005737	cellular_component	cytoplasm
K	0009523	cellular_component	photosystem II
K	0015979	biological_process	photosynthesis
K	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
K	0031676	cellular_component	plasma membrane-derived thylakoid membrane
K	0042651	cellular_component	thylakoid membrane
l	0005737	cellular_component	cytoplasm
l	0009523	cellular_component	photosystem II
l	0009579	cellular_component	thylakoid
l	0015979	biological_process	photosynthesis
l	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
l	0031676	cellular_component	plasma membrane-derived thylakoid membrane
l	0042651	cellular_component	thylakoid membrane
L	0005737	cellular_component	cytoplasm
L	0009523	cellular_component	photosystem II
L	0009579	cellular_component	thylakoid
L	0015979	biological_process	photosynthesis
L	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
L	0031676	cellular_component	plasma membrane-derived thylakoid membrane
L	0042651	cellular_component	thylakoid membrane
m	0005737	cellular_component	cytoplasm
m	0009523	cellular_component	photosystem II
m	0015979	biological_process	photosynthesis
m	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
m	0031676	cellular_component	plasma membrane-derived thylakoid membrane
m	0042651	cellular_component	thylakoid membrane
M	0005737	cellular_component	cytoplasm
M	0009523	cellular_component	photosystem II
M	0015979	biological_process	photosynthesis
M	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
M	0031676	cellular_component	plasma membrane-derived thylakoid membrane
M	0042651	cellular_component	thylakoid membrane
r	0009523	cellular_component	photosystem II
r	0015979	biological_process	photosynthesis
r	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
r	0031676	cellular_component	plasma membrane-derived thylakoid membrane
r	0042651	cellular_component	thylakoid membrane
R	0009523	cellular_component	photosystem II
R	0015979	biological_process	photosynthesis
R	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
R	0031676	cellular_component	plasma membrane-derived thylakoid membrane
R	0042651	cellular_component	thylakoid membrane
t	0005737	cellular_component	cytoplasm
t	0009523	cellular_component	photosystem II
t	0015979	biological_process	photosynthesis
t	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
t	0031676	cellular_component	plasma membrane-derived thylakoid membrane
t	0042651	cellular_component	thylakoid membrane
T	0005737	cellular_component	cytoplasm
T	0009523	cellular_component	photosystem II
T	0015979	biological_process	photosynthesis
T	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
T	0031676	cellular_component	plasma membrane-derived thylakoid membrane
T	0042651	cellular_component	thylakoid membrane
x	0009523	cellular_component	photosystem II
x	0015979	biological_process	photosynthesis
x	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
x	0031676	cellular_component	plasma membrane-derived thylakoid membrane
x	0042651	cellular_component	thylakoid membrane
X	0009523	cellular_component	photosystem II
X	0015979	biological_process	photosynthesis
X	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
X	0031676	cellular_component	plasma membrane-derived thylakoid membrane
X	0042651	cellular_component	thylakoid membrane
y	0009523	cellular_component	photosystem II
y	0015979	biological_process	photosynthesis
y	0031676	cellular_component	plasma membrane-derived thylakoid membrane
y	0042651	cellular_component	thylakoid membrane
Y	0009523	cellular_component	photosystem II
Y	0015979	biological_process	photosynthesis
Y	0031676	cellular_component	plasma membrane-derived thylakoid membrane
Y	0042651	cellular_component	thylakoid membrane
z	0009523	cellular_component	photosystem II
z	0015979	biological_process	photosynthesis
z	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
z	0031676	cellular_component	plasma membrane-derived thylakoid membrane
z	0042651	cellular_component	thylakoid membrane
Z	0009523	cellular_component	photosystem II
Z	0015979	biological_process	photosynthesis
Z	0030096	cellular_component	plasma membrane-derived thylakoid photosystem II
Z	0031676	cellular_component	plasma membrane-derived thylakoid membrane
Z	0042651	cellular_component	thylakoid membrane

Functional Information from PROSITE/UniProt

site_id	PS00244
Number of Residues	27
Details	REACTION_CENTER Photosynthetic reaction center proteins signature. NwtlnPfHmmGvagilggallcAiHGA

Chain	Residue	Details
D	ASN190-ALA216
A	ASN191-SER217

site_id	PS00537
Number of Residues	15
Details	CYTOCHROME_B559 Cytochrome b559 subunits heme-binding site signature. IfTVRWlaVHTLAVP

Chain	Residue	Details
f	ILE14-PRO28
E	VAL14-PRO28

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	1504
Details	Transmembrane: {"description":"Helical","evidences":[{"source":"PubMed","id":"34937700","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7N8O","evidenceCode":"ECO:0000312"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	1480
Details	Topological domain: {"description":"Lumenal, thylakoid","evidences":[{"source":"PubMed","id":"34937700","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7N8O","evidenceCode":"ECO:0000312"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	494
Details	Topological domain: {"description":"Cytoplasmic","evidences":[{"source":"PubMed","id":"34937700","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7N8O","evidenceCode":"ECO:0000312"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	4
Details	Binding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"34937700","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7N8O","evidenceCode":"ECO:0000312"}]}

Chain

Residue

Details

site_id	SWS_FT_FI5
Number of Residues	18
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"34937700","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7N8O","evidenceCode":"ECO:0000312"}]}

Chain

Residue

Details

site_id	SWS_FT_FI6
Number of Residues	12
Details	Binding site: {"evidences":[{"source":"PubMed","id":"34937700","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7N8O","evidenceCode":"ECO:0000312"}]}

Chain

Residue

Details

site_id	SWS_FT_FI7
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI8
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"34937700","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"7N8O","evidenceCode":"ECO:0000312"}]}

Chain

Residue

Details

site_id	SWS_FT_FI9
Number of Residues	2
Details	Site: {"description":"Tyrosine radical intermediate","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI10
Number of Residues	2
Details	Site: {"description":"Stabilizes free radical intermediate","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI11
Number of Residues	4
Details	Binding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_01383","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"34937700","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7N8O","evidenceCode":"ECO:0000312"}]}

Chain

Residue

Details

site_id	SWS_FT_FI12
Number of Residues	10
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01383","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"34937700","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7N8O","evidenceCode":"ECO:0000312"}]}

Chain

Residue

Details

site_id	SWS_FT_FI13
Number of Residues	2
Details	Binding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_00642","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"34937700","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"1904816","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"7N8O","evidenceCode":"ECO:0000312"}]}

Chain

Residue

Details

site_id	SWS_FT_FI14
Number of Residues	2
Details	Binding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_00643","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"34937700","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"1904816","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"7N8O","evidenceCode":"ECO:0000312"}]}

Chain

Residue

Details

site_id	SWS_FT_FI15
Number of Residues	40
Details	Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00808","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"34937700","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7N8O","evidenceCode":"ECO:0000312"}]}

Chain

Residue

Details

site_id	SWS_FT_FI16
Number of Residues	4
Details	Binding site: {"description":"covalent","evidences":[{"source":"PubMed","id":"11315568","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"34937700","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7N8O","evidenceCode":"ECO:0000312"}]}

Chain

Residue

Details

site_id	SWS_FT_FI17
Number of Residues	4
Details	Binding site: {"description":"axial binding residue","evidences":[{"source":"PubMed","id":"11315568","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"34937700","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7N8O","evidenceCode":"ECO:0000312"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)