9PEB
Cryo-EM structure of Arabidopsis thaliana Met1
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003677 | molecular_function | DNA binding |
| A | 0003886 | molecular_function | DNA (cytosine-5-)-methyltransferase activity |
| A | 0005515 | molecular_function | protein binding |
| A | 0005634 | cellular_component | nucleus |
| A | 0006325 | biological_process | chromatin organization |
| A | 0008168 | molecular_function | methyltransferase activity |
| A | 0009294 | biological_process | DNA-mediated transformation |
| A | 0009910 | biological_process | negative regulation of flower development |
| A | 0010069 | biological_process | zygote asymmetric cytokinesis in embryo sac |
| A | 0010229 | biological_process | inflorescence development |
| A | 0016740 | molecular_function | transferase activity |
| A | 0032259 | biological_process | methylation |
| A | 0044027 | biological_process | negative regulation of gene expression via chromosomal CpG island methylation |
| A | 0141044 | biological_process | epigenetic programming in the endosperm |
Functional Information from PROSITE/UniProt
| site_id | PS00094 |
| Number of Residues | 13 |
| Details | C5_MTASE_1 C-5 cytosine-specific DNA methylases active site. DfIngGpPCqGFS |
| Chain | Residue | Details |
| A | ASP1190-SER1202 |
| site_id | PS00095 |
| Number of Residues | 19 |
| Details | C5_MTASE_2 C-5 cytosine-specific DNA methylases C-terminal signature. RqiGNAVpPpLafaLgrkL |
| Chain | Residue | Details |
| A | ARG1502-LEU1520 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 134 |
| Details | Domain: {"description":"BAH 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU00370","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 1 |
| Details | Active site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU01016","evidenceCode":"ECO:0000255"},{"source":"PROSITE-ProRule","id":"PRU10018","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"UniProtKB","id":"O23273","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
