Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

9P0E

Flavobacterium johnsoniae ZAM64 mutant 70S initiation complex with rpsU mRNA containing Shine-Dalgarno sequence.

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
b	0006412	biological_process	translation
B	0002181	biological_process	cytoplasmic translation
B	0003723	molecular_function	RNA binding
B	0003735	molecular_function	structural constituent of ribosome
B	0006412	biological_process	translation
B	0015934	cellular_component	large ribosomal subunit
B	0019843	molecular_function	rRNA binding
c	0005737	cellular_component	cytoplasm
c	0006412	biological_process	translation
c	0019843	molecular_function	rRNA binding
C	0003735	molecular_function	structural constituent of ribosome
C	0005840	cellular_component	ribosome
C	0006412	biological_process	translation
C	0019843	molecular_function	rRNA binding
d	0006412	biological_process	translation
D	0003735	molecular_function	structural constituent of ribosome
D	0006412	biological_process	translation
D	0019843	molecular_function	rRNA binding
e	0003735	molecular_function	structural constituent of ribosome
e	0006412	biological_process	translation
e	0015934	cellular_component	large ribosomal subunit
e	0022625	cellular_component	cytosolic large ribosomal subunit
f	0006412	biological_process	translation
f	0019843	molecular_function	rRNA binding
F	0002181	biological_process	cytoplasmic translation
F	0003735	molecular_function	structural constituent of ribosome
F	0006412	biological_process	translation
F	0019843	molecular_function	rRNA binding
F	0022625	cellular_component	cytosolic large ribosomal subunit
G	0006412	biological_process	translation
G	0019843	molecular_function	rRNA binding
h	0003723	molecular_function	RNA binding
h	0003729	molecular_function	mRNA binding
h	0003735	molecular_function	structural constituent of ribosome
h	0006412	biological_process	translation
h	0019843	molecular_function	rRNA binding
h	0022627	cellular_component	cytosolic small ribosomal subunit
i	0003735	molecular_function	structural constituent of ribosome
i	0006412	biological_process	translation
i	0015935	cellular_component	small ribosomal subunit
i	0019843	molecular_function	rRNA binding
i	0042274	biological_process	ribosomal small subunit biogenesis
j	0003735	molecular_function	structural constituent of ribosome
j	0005737	cellular_component	cytoplasm
j	0006412	biological_process	translation
j	0019843	molecular_function	rRNA binding
j	0042254	biological_process	ribosome biogenesis
j	1990904	cellular_component	ribonucleoprotein complex
J	0003729	molecular_function	mRNA binding
J	0003735	molecular_function	structural constituent of ribosome
J	0005840	cellular_component	ribosome
J	0006412	biological_process	translation
J	0017148	biological_process	negative regulation of translation
J	0022625	cellular_component	cytosolic large ribosomal subunit
k	0003735	molecular_function	structural constituent of ribosome
k	0005737	cellular_component	cytoplasm
k	0006412	biological_process	translation
k	0019843	molecular_function	rRNA binding
k	0070181	molecular_function	small ribosomal subunit rRNA binding
K	0003735	molecular_function	structural constituent of ribosome
K	0006412	biological_process	translation
K	0019843	molecular_function	rRNA binding
K	0022625	cellular_component	cytosolic large ribosomal subunit
K	0070180	molecular_function	large ribosomal subunit rRNA binding
l	0000049	molecular_function	tRNA binding
l	0006412	biological_process	translation
l	0019843	molecular_function	rRNA binding
L	0003735	molecular_function	structural constituent of ribosome
L	0006412	biological_process	translation
L	0019843	molecular_function	rRNA binding
L	0022625	cellular_component	cytosolic large ribosomal subunit
m	0005737	cellular_component	cytoplasm
m	0006412	biological_process	translation
m	0019843	molecular_function	rRNA binding
M	0003735	molecular_function	structural constituent of ribosome
M	0006412	biological_process	translation
M	0019843	molecular_function	rRNA binding
M	0022625	cellular_component	cytosolic large ribosomal subunit
n	0003723	molecular_function	RNA binding
n	0003735	molecular_function	structural constituent of ribosome
n	0005737	cellular_component	cytoplasm
n	0006412	biological_process	translation
n	0015935	cellular_component	small ribosomal subunit
n	0022627	cellular_component	cytosolic small ribosomal subunit
N	0003735	molecular_function	structural constituent of ribosome
N	0006412	biological_process	translation
N	0015934	cellular_component	large ribosomal subunit
N	0022625	cellular_component	cytosolic large ribosomal subunit
o	0000049	molecular_function	tRNA binding
o	0006412	biological_process	translation
O	0005737	cellular_component	cytoplasm
O	0006412	biological_process	translation
O	0008097	molecular_function	5S rRNA binding
O	0019843	molecular_function	rRNA binding
O	0022625	cellular_component	cytosolic large ribosomal subunit
p	0006412	biological_process	translation
p	0019843	molecular_function	rRNA binding
P	0003735	molecular_function	structural constituent of ribosome
P	0006412	biological_process	translation
P	0022625	cellular_component	cytosolic large ribosomal subunit
Q	0000027	biological_process	ribosomal large subunit assembly
Q	0019843	molecular_function	rRNA binding
r	0000049	molecular_function	tRNA binding
r	0005829	cellular_component	cytosol
r	0006412	biological_process	translation
r	0015935	cellular_component	small ribosomal subunit
r	0019843	molecular_function	rRNA binding
R	0003735	molecular_function	structural constituent of ribosome
R	0005737	cellular_component	cytoplasm
R	0006412	biological_process	translation
R	0019843	molecular_function	rRNA binding
s	0003735	molecular_function	structural constituent of ribosome
s	0006412	biological_process	translation
s	0015935	cellular_component	small ribosomal subunit
s	0019843	molecular_function	rRNA binding
S	0003735	molecular_function	structural constituent of ribosome
S	0006412	biological_process	translation
S	0015934	cellular_component	large ribosomal subunit
S	0019843	molecular_function	rRNA binding
S	0022625	cellular_component	cytosolic large ribosomal subunit
t	0005737	cellular_component	cytoplasm
t	0006412	biological_process	translation
t	0019843	molecular_function	rRNA binding
t	0022627	cellular_component	cytosolic small ribosomal subunit
T	0006412	biological_process	translation
T	0019843	molecular_function	rRNA binding
u	0003735	molecular_function	structural constituent of ribosome
u	0005737	cellular_component	cytoplasm
u	0006412	biological_process	translation
u	0015935	cellular_component	small ribosomal subunit
U	0006412	biological_process	translation
U	0019843	molecular_function	rRNA binding
v	0003735	molecular_function	structural constituent of ribosome
v	0006412	biological_process	translation
v	0019843	molecular_function	rRNA binding
v	0022627	cellular_component	cytosolic small ribosomal subunit
V	0003723	molecular_function	RNA binding
V	0006412	biological_process	translation
V	0008097	molecular_function	5S rRNA binding
V	0022625	cellular_component	cytosolic large ribosomal subunit
w	0003735	molecular_function	structural constituent of ribosome
w	0006412	biological_process	translation
w	0019843	molecular_function	rRNA binding
w	0022627	cellular_component	cytosolic small ribosomal subunit
w	0070181	molecular_function	small ribosomal subunit rRNA binding
W	0003735	molecular_function	structural constituent of ribosome
W	0006412	biological_process	translation
W	0022625	cellular_component	cytosolic large ribosomal subunit
x	0000028	biological_process	ribosomal small subunit assembly
x	0003735	molecular_function	structural constituent of ribosome
x	0005737	cellular_component	cytoplasm
x	0006412	biological_process	translation
x	0019843	molecular_function	rRNA binding
X	0003735	molecular_function	structural constituent of ribosome
X	0006412	biological_process	translation
X	0019843	molecular_function	rRNA binding
y	0005829	cellular_component	cytosol
y	0006412	biological_process	translation
y	0015935	cellular_component	small ribosomal subunit
y	0019843	molecular_function	rRNA binding
y	0070181	molecular_function	small ribosomal subunit rRNA binding
Y	0006412	biological_process	translation
Z	0006412	biological_process	translation
Z	0022625	cellular_component	cytosolic large ribosomal subunit

Functional Information from PROSITE/UniProt

site_id	PS00049
Number of Residues	27
Details	RIBOSOMAL_L14 Ribosomal protein L14 signature. AVVVrtkkevrra.DGsyirFddNacVL

Chain	Residue	Details
K	ALA60-LEU86

site_id	PS00052
Number of Residues	27
Details	RIBOSOMAL_S7 Ribosomal protein S7 signature. DqLvtrFVnnlmwdGKKstafkVFydA

Chain	Residue	Details
l	ASP19-ALA45

site_id	PS00053
Number of Residues	18
Details	RIBOSOMAL_S8 Ribosomal protein S8 signature. GiaIVSTSkGLMtgkqAK

Chain	Residue	Details
m	GLY102-LYS119

site_id	PS00054
Number of Residues	23
Details	RIBOSOMAL_S11 Ribosomal protein S11 signature. IrSIhnG.GIeVteiiDvTPmPHN

Chain	Residue	Details
p	ILE95-ASN117

site_id	PS00055
Number of Residues	8
Details	RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAmR

Chain	Residue	Details
q	LYS43-ARG50

site_id	PS00056
Number of Residues	13
Details	RIBOSOMAL_S17 Ribosomal protein S17 signature. GDtVrIsEtRPLS

Chain	Residue	Details
v	GLY59-SER71

site_id	PS00061
Number of Residues	29
Details	ADH_SHORT Short-chain dehydrogenases/reductases family signature. PdhkhavialTsiYGVGKTRSkAILaAAG

Chain	Residue	Details
r	PRO10-GLY38

site_id	PS00323
Number of Residues	25
Details	RIBOSOMAL_S19 Ribosomal protein S19 signature. NGRqfvpvyVtenmVGhkLGEFspT

Chain	Residue	Details
x	ASN53-THR77

site_id	PS00358
Number of Residues	17
Details	RIBOSOMAL_L5 Ribosomal protein L5 signature. LtkITGQkaViTkARkS

Chain	Residue	Details
E	LEU60-SER76

site_id	PS00361
Number of Residues	16
Details	RIBOSOMAL_S10 Ribosomal protein S10 signature. VkttGAvvtGPIpLPT

Chain	Residue	Details
o	VAL28-THR43

site_id	PS00362
Number of Residues	31
Details	RIBOSOMAL_S15 Ribosomal protein S15 signature. LteHLkknRhDynTersLvlLvgkrraLldY

Chain	Residue	Details
t	LEU38-TYR68

site_id	PS00474
Number of Residues	24
Details	RIBOSOMAL_L3 Ribosomal protein L3 signature. FeegefvDvqGvSkGKGfqGvvkR

Chain	Residue	Details
C	PHE100-ARG123

site_id	PS00475
Number of Residues	31
Details	RIBOSOMAL_L15 Ribosomal protein L15 signature. KILGrGeLkak..LkVtahkFTatAkaaIeaaG

Chain	Residue	Details
L	LYS114-GLY144

site_id	PS00525
Number of Residues	9
Details	RIBOSOMAL_L6_1 Ribosomal protein L6 signature 1. PEpYKGKGV

Chain	Residue	Details
F	PRO157-VAL165

site_id	PS00527
Number of Residues	23
Details	RIBOSOMAL_S14 Ribosomal protein S14 signature. R.CkltgrprgyirqFGISRvTFR

Chain	Residue	Details
s	ARG51-ARG73

site_id	PS00548
Number of Residues	35
Details	RIBOSOMAL_S3 Ribosomal protein S3 signature. ARsegfkeGrIplSt..FradIDyalaeahTtyGrmG

Chain	Residue	Details
h	ALA162-GLY196

site_id	PS00579
Number of Residues	15
Details	RIBOSOMAL_L29 Ribosomal protein L29 signature. NPLRIRsVRRTVARL

Chain	Residue	Details
Y	ASN39-LEU53

site_id	PS00585
Number of Residues	33
Details	RIBOSOMAL_S5 Ribosomal protein S5 signature. GRafgFsAivVVGDen.GvVGhGlgksk.DVse.AI

Chain	Residue	Details
j	GLY34-ILE66

site_id	PS00586
Number of Residues	12
Details	RIBOSOMAL_L16_1 Ribosomal protein L16 signature 1. KReGQLWIKIFP

Chain	Residue	Details
M	LYS61-PRO72

site_id	PS00588
Number of Residues	21
Details	FLAGELLA_BB_ROD Flagella basal body rod proteins signature. TlQykvlqplSMTENVNNfDV

Chain	Residue	Details
n	THR41-VAL61

site_id	PS00646
Number of Residues	14
Details	RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHrrGlpVRGQ

Chain	Residue	Details
r	ARG87-GLN100

site_id	PS00701
Number of Residues	12
Details	RIBOSOMAL_L16_2 Ribosomal protein L16 signature 2. RMGkGKGaveyW

Chain	Residue	Details
M	ARG84-TRP95

site_id	PS00783
Number of Residues	23
Details	RIBOSOMAL_L13 Ribosomal protein L13 signature. VKGMLPknkl.GAelfrnLnVVvG

Chain	Residue	Details
J	VAL110-GLY132

site_id	PS00784
Number of Residues	20
Details	RIBOSOMAL_L34 Ribosomal protein L34 signature. KRTFQpskrkRrnkh.GFmdR

Chain	Residue	Details
d	LYS3-ARG22

site_id	PS00828
Number of Residues	27
Details	RIBOSOMAL_L36 Ribosomal protein L36 signature. SaeCiiVrRkgrLyViNkknpRFkQrQ

Chain	Residue	Details
f	SER11-GLN37

site_id	PS00831
Number of Residues	15
Details	RIBOSOMAL_L27 Ribosomal protein L27 signature. GnIIvRQRGskhnpG

Chain	Residue	Details
W	GLY34-GLY48

site_id	PS00936
Number of Residues	27
Details	RIBOSOMAL_L35 Ribosomal protein L35 signature. KTKsSAkKRFkvtgsgkikrkhafk.SH

Chain	Residue	Details
e	LYS5-HIS31

site_id	PS00937
Number of Residues	17
Details	RIBOSOMAL_L20 Ribosomal protein L20 signature. KrnfRsLWIQRINagaR

Chain	Residue	Details
Q	LYS54-ARG70

site_id	PS01108
Number of Residues	18
Details	RIBOSOMAL_L24 Ribosomal protein L24 signature. GDiVrVIaGdhKGae.GkV

Chain	Residue	Details
U	GLY9-VAL26

site_id	PS01143
Number of Residues	22
Details	RIBOSOMAL_L31 Ribosomal protein L31 signature. EIsrtsHPFYTgksklidta....GR

Chain	Residue	Details
a	GLU49-ARG70

site_id	PS01167
Number of Residues	23
Details	RIBOSOMAL_L17 Ribosomal protein L17 signature. InTTvaKaKalkqfvEpLITkSK

Chain	Residue	Details
N	ILE34-LYS56

site_id	PS01169
Number of Residues	23
Details	RIBOSOMAL_L21 Ribosomal protein L21 signature. VivfKkkrRKgykkrnGHRQylT

Chain	Residue	Details
R	VAL72-THR94

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)