Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

9NTA

Methanosarcina acetivorans 50S subunit obtained from methanol-grown cells

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
Ba	0003735	molecular_function	structural constituent of ribosome
Ba	0005840	cellular_component	ribosome
Ba	0006412	biological_process	translation
Ba	0022625	cellular_component	cytosolic large ribosomal subunit
Bb	0003735	molecular_function	structural constituent of ribosome
Bb	0005840	cellular_component	ribosome
Bb	0006412	biological_process	translation
Bb	0008270	molecular_function	zinc ion binding
Bb	0070180	molecular_function	large ribosomal subunit rRNA binding
Bc	0003735	molecular_function	structural constituent of ribosome
Bc	0005840	cellular_component	ribosome
Bc	0006412	biological_process	translation
Bc	0008270	molecular_function	zinc ion binding
BC	0002181	biological_process	cytoplasmic translation
BC	0003723	molecular_function	RNA binding
BC	0003735	molecular_function	structural constituent of ribosome
BC	0005840	cellular_component	ribosome
BC	0006412	biological_process	translation
BC	0015934	cellular_component	large ribosomal subunit
BC	0019843	molecular_function	rRNA binding
BC	0022625	cellular_component	cytosolic large ribosomal subunit
Bd	0002181	biological_process	cytoplasmic translation
Bd	0003735	molecular_function	structural constituent of ribosome
Bd	0005840	cellular_component	ribosome
Bd	0006412	biological_process	translation
Bd	0022625	cellular_component	cytosolic large ribosomal subunit
BD	0003735	molecular_function	structural constituent of ribosome
BD	0005840	cellular_component	ribosome
BD	0006412	biological_process	translation
BD	0019843	molecular_function	rRNA binding
BD	0022625	cellular_component	cytosolic large ribosomal subunit
Be	0003735	molecular_function	structural constituent of ribosome
Be	0005840	cellular_component	ribosome
Be	0006412	biological_process	translation
BE	0003735	molecular_function	structural constituent of ribosome
BE	0005840	cellular_component	ribosome
BE	0006412	biological_process	translation
BE	0019843	molecular_function	rRNA binding
BE	0022625	cellular_component	cytosolic large ribosomal subunit
Bf	0003735	molecular_function	structural constituent of ribosome
Bf	0005840	cellular_component	ribosome
Bf	0006412	biological_process	translation
Bf	0008270	molecular_function	zinc ion binding
Bf	0070180	molecular_function	large ribosomal subunit rRNA binding
BF	0000049	molecular_function	tRNA binding
BF	0003735	molecular_function	structural constituent of ribosome
BF	0005840	cellular_component	ribosome
BF	0006412	biological_process	translation
BF	0019843	molecular_function	rRNA binding
BF	0022625	cellular_component	cytosolic large ribosomal subunit
BG	0002181	biological_process	cytoplasmic translation
BG	0003735	molecular_function	structural constituent of ribosome
BG	0005840	cellular_component	ribosome
BG	0006412	biological_process	translation
BG	0019843	molecular_function	rRNA binding
BG	0022625	cellular_component	cytosolic large ribosomal subunit
BH	0001682	biological_process	tRNA 5'-leader removal
BH	0003723	molecular_function	RNA binding
BH	0003735	molecular_function	structural constituent of ribosome
BH	0004526	molecular_function	ribonuclease P activity
BH	0005737	cellular_component	cytoplasm
BH	0005840	cellular_component	ribosome
BH	0006412	biological_process	translation
BH	0042254	biological_process	ribosome biogenesis
BH	1990904	cellular_component	ribonucleoprotein complex
BI	0003735	molecular_function	structural constituent of ribosome
BI	0005840	cellular_component	ribosome
BI	0006412	biological_process	translation
BI	0022625	cellular_component	cytosolic large ribosomal subunit
BJ	0003735	molecular_function	structural constituent of ribosome
BJ	0005840	cellular_component	ribosome
BJ	0006412	biological_process	translation
BJ	0015934	cellular_component	large ribosomal subunit
BJ	0017148	biological_process	negative regulation of translation
BJ	0022625	cellular_component	cytosolic large ribosomal subunit
BK	0003735	molecular_function	structural constituent of ribosome
BK	0005840	cellular_component	ribosome
BK	0006412	biological_process	translation
BK	0019843	molecular_function	rRNA binding
BK	0022625	cellular_component	cytosolic large ribosomal subunit
BK	0070180	molecular_function	large ribosomal subunit rRNA binding
BL	0003735	molecular_function	structural constituent of ribosome
BL	0005840	cellular_component	ribosome
BL	0006412	biological_process	translation
BL	0015934	cellular_component	large ribosomal subunit
BL	0019843	molecular_function	rRNA binding
BL	0022625	cellular_component	cytosolic large ribosomal subunit
BM	0002181	biological_process	cytoplasmic translation
BM	0003735	molecular_function	structural constituent of ribosome
BM	0005737	cellular_component	cytoplasm
BM	0005840	cellular_component	ribosome
BM	0006412	biological_process	translation
BM	0022625	cellular_component	cytosolic large ribosomal subunit
BN	0000027	biological_process	ribosomal large subunit assembly
BN	0003735	molecular_function	structural constituent of ribosome
BN	0005840	cellular_component	ribosome
BN	0006412	biological_process	translation
BN	0008097	molecular_function	5S rRNA binding
BN	0019843	molecular_function	rRNA binding
BN	0022625	cellular_component	cytosolic large ribosomal subunit
BO	0002181	biological_process	cytoplasmic translation
BO	0003735	molecular_function	structural constituent of ribosome
BO	0005840	cellular_component	ribosome
BO	0006412	biological_process	translation
BO	0022625	cellular_component	cytosolic large ribosomal subunit
BP	0003723	molecular_function	RNA binding
BP	0003735	molecular_function	structural constituent of ribosome
BP	0005840	cellular_component	ribosome
BP	0006412	biological_process	translation
BP	0022625	cellular_component	cytosolic large ribosomal subunit
BP	0070180	molecular_function	large ribosomal subunit rRNA binding
BQ	0003735	molecular_function	structural constituent of ribosome
BQ	0005840	cellular_component	ribosome
BQ	0006412	biological_process	translation
BQ	0070180	molecular_function	large ribosomal subunit rRNA binding
BR	0003735	molecular_function	structural constituent of ribosome
BR	0005840	cellular_component	ribosome
BR	0006412	biological_process	translation
BR	0022625	cellular_component	cytosolic large ribosomal subunit
BS	0002181	biological_process	cytoplasmic translation
BS	0003735	molecular_function	structural constituent of ribosome
BS	0005840	cellular_component	ribosome
BS	0006412	biological_process	translation
BS	0015934	cellular_component	large ribosomal subunit
BS	0019843	molecular_function	rRNA binding
BS	0022625	cellular_component	cytosolic large ribosomal subunit
BT	0003735	molecular_function	structural constituent of ribosome
BT	0005840	cellular_component	ribosome
BT	0006412	biological_process	translation
BT	0019843	molecular_function	rRNA binding
BU	0002181	biological_process	cytoplasmic translation
BU	0003723	molecular_function	RNA binding
BU	0003735	molecular_function	structural constituent of ribosome
BU	0005840	cellular_component	ribosome
BU	0006412	biological_process	translation
BU	0015934	cellular_component	large ribosomal subunit
BU	0019843	molecular_function	rRNA binding
BU	0022625	cellular_component	cytosolic large ribosomal subunit
BV	0003735	molecular_function	structural constituent of ribosome
BV	0006412	biological_process	translation
BV	0008270	molecular_function	zinc ion binding
BV	0019843	molecular_function	rRNA binding
BW	0003735	molecular_function	structural constituent of ribosome
BW	0005840	cellular_component	ribosome
BW	0006412	biological_process	translation
BX	0000463	biological_process	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
BX	0003735	molecular_function	structural constituent of ribosome
BX	0006412	biological_process	translation
BX	0015934	cellular_component	large ribosomal subunit
BX	0022625	cellular_component	cytosolic large ribosomal subunit
BY	0003723	molecular_function	RNA binding
BY	0003735	molecular_function	structural constituent of ribosome
BY	0006412	biological_process	translation
BY	0022625	cellular_component	cytosolic large ribosomal subunit
BZ	0002181	biological_process	cytoplasmic translation
BZ	0003735	molecular_function	structural constituent of ribosome
BZ	0005840	cellular_component	ribosome
BZ	0006412	biological_process	translation
BZ	0022625	cellular_component	cytosolic large ribosomal subunit

Functional Information from PROSITE/UniProt

site_id	PS00049
Number of Residues	27
Details	RIBOSOMAL_L14 Ribosomal protein L14 signature. AVVVrqkqefrrp.DGlhvsFedNamVI

Chain	Residue	Details
BK	ALA71-ILE97

site_id	PS00051
Number of Residues	17
Details	RIBOSOMAL_L39E Ribosomal protein L39e signature. KTnrkVvsHprrRHWRR

Chain	Residue	Details
Bd	LYS29-ARG45

site_id	PS00358
Number of Residues	17
Details	RIBOSOMAL_L5 Ribosomal protein L5 signature. LrnITGQevVrCfAKrT

Chain	Residue	Details
BF	LEU29-THR45

site_id	PS00474
Number of Residues	24
Details	RIBOSOMAL_L3 Ribosomal protein L3 signature. FkngtlvDtaAiTiGKGtqGpvkR

Chain	Residue	Details
BD	PHE193-ARG216

site_id	PS00475
Number of Residues	31
Details	RIBOSOMAL_L15 Ribosomal protein L15 signature. KVLGaGlLdhp..VtIaaltFSdsAfekIteaG

Chain	Residue	Details
BO	LYS73-GLY103
BL	LYS103-GLY133

site_id	PS00579
Number of Residues	15
Details	RIBOSOMAL_L29 Ribosomal protein L29 signature. NPGRIGeIRRTIARI

Chain	Residue	Details
BW	ASN43-ILE57

site_id	PS00580
Number of Residues	21
Details	RIBOSOMAL_L32E Ribosomal protein L32e signature. FkRtcshKfkRLddn..WRRprG

Chain	Residue	Details
Ba	PHE51-GLY71

site_id	PS00634
Number of Residues	33
Details	RIBOSOMAL_L30 Ribosomal protein L30 signature. TMkmLrLhKvnHcVfvpenphykgMVqkVkdYV

Chain	Residue	Details
BX	THR20-VAL52

site_id	PS00700
Number of Residues	22
Details	RIBOSOMAL_L6_2 Ribosomal protein L6 signature 2. QktkIkrFdpRiFqDGIYIvqK

Chain	Residue	Details
BG	GLN154-LYS175

site_id	PS00783
Number of Residues	24
Details	RIBOSOMAL_L13 Ribosomal protein L13 signature. IRGMLPykrarGRdamsrLkVYvG

Chain	Residue	Details
BJ	ILE80-GLY103

site_id	PS00939
Number of Residues	27
Details	RIBOSOMAL_L1E Ribosomal protein L1e signature. NtkeRryAIrSAIaATTdptlvslRGH

Chain	Residue	Details
BE	ASN106-HIS132

site_id	PS00993
Number of Residues	21
Details	RIBOSOMAL_L30E_2 Ribosomal protein L30e signature 2. ELGPvcGKpftiaaMaIlDvG

Chain	Residue	Details
BY	GLU70-GLY90

site_id	PS01073
Number of Residues	18
Details	RIBOSOMAL_L24E Ribosomal protein L24e signature. FcGkmLePGtGklYvKkD

Chain	Residue	Details
BV	PHE8-ASP25

site_id	PS01077
Number of Residues	20
Details	RIBOSOMAL_L37E Ribosomal protein L37e signature. GTsSmGkRqkrt.HakCrRCG

Chain	Residue	Details
Bc	GLY4-GLY23

site_id	PS01082
Number of Residues	18
Details	RIBOSOMAL_L7AE Ribosomal protein L7Ae signature. SeekkAPYifIkNQkeLG

Chain	Residue	Details
BH	SER68-GLY85

site_id	PS01106
Number of Residues	18
Details	RIBOSOMAL_L18E Ribosomal protein L18e signature. KrLeaPSrnYAaVNIsKI

Chain	Residue	Details
BO	LYS41-ILE58

site_id	PS01108
Number of Residues	18
Details	RIBOSOMAL_L24 Ribosomal protein L24 signature. GDtVkVMrGdfKGte.GkV

Chain	Residue	Details
BU	GLY50-VAL67

site_id	PS01144
Number of Residues	15
Details	RIBOSOMAL_L31E Ribosomal protein L31e signature. VKLDksINeHlWeKG

Chain	Residue	Details
BZ	VAL49-GLY63

site_id	PS01171
Number of Residues	26
Details	RIBOSOMAL_L21E Ribosomal protein L21e signature. GQmVhididpsvqk.GmpNpkFqGsTG

Chain	Residue	Details
BR	GLY37-GLY62

site_id	PS01194
Number of Residues	24
Details	RIBOSOMAL_L15E Ribosomal protein L15e signature. DRARsLGYkAkqGIVVVRvNVrRG

Chain	Residue	Details
BM	ASP48-GLY71

site_id	PS01257
Number of Residues	22
Details	RIBOSOMAL_L10E Ribosomal protein L10e signature. ADRvssGMRrAFGKNvGtaARV

Chain	Residue	Details
BI	ALA106-VAL127

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	262
Details	Region: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	27
Details	Compositional bias: {"description":"Polar residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	55
Details	Compositional bias: {"description":"Basic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	12
Details	Compositional bias: {"description":"Basic and acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

site_id	SWS_FT_FI6
Number of Residues	30
Details	Zinc finger: {"description":"C4-type","evidences":[{"source":"HAMAP-Rule","id":"MF_00773","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI7
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00773","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI10
Number of Residues	18
Details	Zinc finger: {"description":"C4-type","evidences":[{"evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI11
Number of Residues	4
Details	Binding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)