9MU5
Structure of a native Drosophila melanogaster hexameric nucleosome
This is a non-PDB format compatible entry.
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| a | 0000786 | cellular_component | nucleosome |
| a | 0003677 | molecular_function | DNA binding |
| a | 0030527 | molecular_function | structural constituent of chromatin |
| a | 0046982 | molecular_function | protein heterodimerization activity |
| b | 0003677 | molecular_function | DNA binding |
| b | 0030527 | molecular_function | structural constituent of chromatin |
| b | 0046982 | molecular_function | protein heterodimerization activity |
| e | 0000786 | cellular_component | nucleosome |
| e | 0003677 | molecular_function | DNA binding |
| e | 0030527 | molecular_function | structural constituent of chromatin |
| e | 0046982 | molecular_function | protein heterodimerization activity |
| f | 0003677 | molecular_function | DNA binding |
| f | 0030527 | molecular_function | structural constituent of chromatin |
| f | 0046982 | molecular_function | protein heterodimerization activity |
| g | 0000786 | cellular_component | nucleosome |
| g | 0003677 | molecular_function | DNA binding |
| g | 0030527 | molecular_function | structural constituent of chromatin |
| g | 0046982 | molecular_function | protein heterodimerization activity |
| h | 0000786 | cellular_component | nucleosome |
| h | 0003677 | molecular_function | DNA binding |
| h | 0030527 | molecular_function | structural constituent of chromatin |
| h | 0046982 | molecular_function | protein heterodimerization activity |
Functional Information from PROSITE/UniProt
| site_id | PS00046 |
| Number of Residues | 7 |
| Details | HISTONE_H2A Histone H2A signature. AGLqFPV |
| Chain | Residue | Details |
| g | ALA21-VAL27 |
| site_id | PS00357 |
| Number of Residues | 23 |
| Details | HISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG |
| Chain | Residue | Details |
| h | ARG90-GLY112 |
| site_id | PS00959 |
| Number of Residues | 9 |
| Details | HISTONE_H3_2 Histone H3 signature 2. PFqRLVREI |
| Chain | Residue | Details |
| a | PRO67-ILE75 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 13 |
| Details | Modified residue: {"description":"N6-succinyllysine","evidences":[{"source":"PubMed","id":"22389435","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"N5-methylglutamine","evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 1 |
| Details | Glycosylation: {"description":"O-linked (GlcNAc) serine","evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"21764853","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18188155","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"PubMed","id":"22389435","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 4 |
| Details | Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"18327897","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
