9M3V

Arabidopsis thaliana CDC48A, nucleotide-free (Apo)

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000166	molecular_function	nucleotide binding
A	0005515	molecular_function	protein binding
A	0005524	molecular_function	ATP binding
A	0005634	cellular_component	nucleus
A	0005635	cellular_component	nuclear envelope
A	0005730	cellular_component	nucleolus
A	0005737	cellular_component	cytoplasm
A	0005794	cellular_component	Golgi apparatus
A	0005811	cellular_component	lipid droplet
A	0005819	cellular_component	spindle
A	0005829	cellular_component	cytosol
A	0005886	cellular_component	plasma membrane
A	0006511	biological_process	ubiquitin-dependent protein catabolic process
A	0009505	cellular_component	plant-type cell wall
A	0009506	cellular_component	plasmodesma
A	0009524	cellular_component	phragmoplast
A	0009707	cellular_component	chloroplast outer membrane
A	0009846	biological_process	pollen germination
A	0009860	biological_process	pollen tube growth
A	0010498	biological_process	proteasomal protein catabolic process
A	0015031	biological_process	protein transport
A	0016887	molecular_function	ATP hydrolysis activity
A	0022626	cellular_component	cytosolic ribosome
A	0030162	biological_process	regulation of proteolysis
A	0030970	biological_process	retrograde protein transport, ER to cytosol
A	0031348	biological_process	negative regulation of defense response
A	0031593	molecular_function	polyubiquitin modification-dependent protein binding
A	0031648	biological_process	protein destabilization
A	0031969	cellular_component	chloroplast membrane
A	0031981	cellular_component	nuclear lumen
A	0032991	cellular_component	protein-containing complex
A	0034098	cellular_component	VCP-NPL4-UFD1 AAA ATPase complex
A	0034614	biological_process	cellular response to reactive oxygen species
A	0042802	molecular_function	identical protein binding
A	0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
A	0051228	biological_process	mitotic spindle disassembly
A	0051301	biological_process	cell division
A	0097352	biological_process	autophagosome maturation
A	1902882	biological_process	regulation of response to oxidative stress
B	0000166	molecular_function	nucleotide binding
B	0005515	molecular_function	protein binding
B	0005524	molecular_function	ATP binding
B	0005634	cellular_component	nucleus
B	0005635	cellular_component	nuclear envelope
B	0005730	cellular_component	nucleolus
B	0005737	cellular_component	cytoplasm
B	0005794	cellular_component	Golgi apparatus
B	0005811	cellular_component	lipid droplet
B	0005819	cellular_component	spindle
B	0005829	cellular_component	cytosol
B	0005886	cellular_component	plasma membrane
B	0006511	biological_process	ubiquitin-dependent protein catabolic process
B	0009505	cellular_component	plant-type cell wall
B	0009506	cellular_component	plasmodesma
B	0009524	cellular_component	phragmoplast
B	0009707	cellular_component	chloroplast outer membrane
B	0009846	biological_process	pollen germination
B	0009860	biological_process	pollen tube growth
B	0010498	biological_process	proteasomal protein catabolic process
B	0015031	biological_process	protein transport
B	0016887	molecular_function	ATP hydrolysis activity
B	0022626	cellular_component	cytosolic ribosome
B	0030162	biological_process	regulation of proteolysis
B	0030970	biological_process	retrograde protein transport, ER to cytosol
B	0031348	biological_process	negative regulation of defense response
B	0031593	molecular_function	polyubiquitin modification-dependent protein binding
B	0031648	biological_process	protein destabilization
B	0031969	cellular_component	chloroplast membrane
B	0031981	cellular_component	nuclear lumen
B	0032991	cellular_component	protein-containing complex
B	0034098	cellular_component	VCP-NPL4-UFD1 AAA ATPase complex
B	0034614	biological_process	cellular response to reactive oxygen species
B	0042802	molecular_function	identical protein binding
B	0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
B	0051228	biological_process	mitotic spindle disassembly
B	0051301	biological_process	cell division
B	0097352	biological_process	autophagosome maturation
B	1902882	biological_process	regulation of response to oxidative stress
C	0000166	molecular_function	nucleotide binding
C	0005515	molecular_function	protein binding
C	0005524	molecular_function	ATP binding
C	0005634	cellular_component	nucleus
C	0005635	cellular_component	nuclear envelope
C	0005730	cellular_component	nucleolus
C	0005737	cellular_component	cytoplasm
C	0005794	cellular_component	Golgi apparatus
C	0005811	cellular_component	lipid droplet
C	0005819	cellular_component	spindle
C	0005829	cellular_component	cytosol
C	0005886	cellular_component	plasma membrane
C	0006511	biological_process	ubiquitin-dependent protein catabolic process
C	0009505	cellular_component	plant-type cell wall
C	0009506	cellular_component	plasmodesma
C	0009524	cellular_component	phragmoplast
C	0009707	cellular_component	chloroplast outer membrane
C	0009846	biological_process	pollen germination
C	0009860	biological_process	pollen tube growth
C	0010498	biological_process	proteasomal protein catabolic process
C	0015031	biological_process	protein transport
C	0016887	molecular_function	ATP hydrolysis activity
C	0022626	cellular_component	cytosolic ribosome
C	0030162	biological_process	regulation of proteolysis
C	0030970	biological_process	retrograde protein transport, ER to cytosol
C	0031348	biological_process	negative regulation of defense response
C	0031593	molecular_function	polyubiquitin modification-dependent protein binding
C	0031648	biological_process	protein destabilization
C	0031969	cellular_component	chloroplast membrane
C	0031981	cellular_component	nuclear lumen
C	0032991	cellular_component	protein-containing complex
C	0034098	cellular_component	VCP-NPL4-UFD1 AAA ATPase complex
C	0034614	biological_process	cellular response to reactive oxygen species
C	0042802	molecular_function	identical protein binding
C	0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
C	0051228	biological_process	mitotic spindle disassembly
C	0051301	biological_process	cell division
C	0097352	biological_process	autophagosome maturation
C	1902882	biological_process	regulation of response to oxidative stress
D	0000166	molecular_function	nucleotide binding
D	0005515	molecular_function	protein binding
D	0005524	molecular_function	ATP binding
D	0005634	cellular_component	nucleus
D	0005635	cellular_component	nuclear envelope
D	0005730	cellular_component	nucleolus
D	0005737	cellular_component	cytoplasm
D	0005794	cellular_component	Golgi apparatus
D	0005811	cellular_component	lipid droplet
D	0005819	cellular_component	spindle
D	0005829	cellular_component	cytosol
D	0005886	cellular_component	plasma membrane
D	0006511	biological_process	ubiquitin-dependent protein catabolic process
D	0009505	cellular_component	plant-type cell wall
D	0009506	cellular_component	plasmodesma
D	0009524	cellular_component	phragmoplast
D	0009707	cellular_component	chloroplast outer membrane
D	0009846	biological_process	pollen germination
D	0009860	biological_process	pollen tube growth
D	0010498	biological_process	proteasomal protein catabolic process
D	0015031	biological_process	protein transport
D	0016887	molecular_function	ATP hydrolysis activity
D	0022626	cellular_component	cytosolic ribosome
D	0030162	biological_process	regulation of proteolysis
D	0030970	biological_process	retrograde protein transport, ER to cytosol
D	0031348	biological_process	negative regulation of defense response
D	0031593	molecular_function	polyubiquitin modification-dependent protein binding
D	0031648	biological_process	protein destabilization
D	0031969	cellular_component	chloroplast membrane
D	0031981	cellular_component	nuclear lumen
D	0032991	cellular_component	protein-containing complex
D	0034098	cellular_component	VCP-NPL4-UFD1 AAA ATPase complex
D	0034614	biological_process	cellular response to reactive oxygen species
D	0042802	molecular_function	identical protein binding
D	0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
D	0051228	biological_process	mitotic spindle disassembly
D	0051301	biological_process	cell division
D	0097352	biological_process	autophagosome maturation
D	1902882	biological_process	regulation of response to oxidative stress
E	0000166	molecular_function	nucleotide binding
E	0005515	molecular_function	protein binding
E	0005524	molecular_function	ATP binding
E	0005634	cellular_component	nucleus
E	0005635	cellular_component	nuclear envelope
E	0005730	cellular_component	nucleolus
E	0005737	cellular_component	cytoplasm
E	0005794	cellular_component	Golgi apparatus
E	0005811	cellular_component	lipid droplet
E	0005819	cellular_component	spindle
E	0005829	cellular_component	cytosol
E	0005886	cellular_component	plasma membrane
E	0006511	biological_process	ubiquitin-dependent protein catabolic process
E	0009505	cellular_component	plant-type cell wall
E	0009506	cellular_component	plasmodesma
E	0009524	cellular_component	phragmoplast
E	0009707	cellular_component	chloroplast outer membrane
E	0009846	biological_process	pollen germination
E	0009860	biological_process	pollen tube growth
E	0010498	biological_process	proteasomal protein catabolic process
E	0015031	biological_process	protein transport
E	0016887	molecular_function	ATP hydrolysis activity
E	0022626	cellular_component	cytosolic ribosome
E	0030162	biological_process	regulation of proteolysis
E	0030970	biological_process	retrograde protein transport, ER to cytosol
E	0031348	biological_process	negative regulation of defense response
E	0031593	molecular_function	polyubiquitin modification-dependent protein binding
E	0031648	biological_process	protein destabilization
E	0031969	cellular_component	chloroplast membrane
E	0031981	cellular_component	nuclear lumen
E	0032991	cellular_component	protein-containing complex
E	0034098	cellular_component	VCP-NPL4-UFD1 AAA ATPase complex
E	0034614	biological_process	cellular response to reactive oxygen species
E	0042802	molecular_function	identical protein binding
E	0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
E	0051228	biological_process	mitotic spindle disassembly
E	0051301	biological_process	cell division
E	0097352	biological_process	autophagosome maturation
E	1902882	biological_process	regulation of response to oxidative stress
F	0000166	molecular_function	nucleotide binding
F	0005515	molecular_function	protein binding
F	0005524	molecular_function	ATP binding
F	0005634	cellular_component	nucleus
F	0005635	cellular_component	nuclear envelope
F	0005730	cellular_component	nucleolus
F	0005737	cellular_component	cytoplasm
F	0005794	cellular_component	Golgi apparatus
F	0005811	cellular_component	lipid droplet
F	0005819	cellular_component	spindle
F	0005829	cellular_component	cytosol
F	0005886	cellular_component	plasma membrane
F	0006511	biological_process	ubiquitin-dependent protein catabolic process
F	0009505	cellular_component	plant-type cell wall
F	0009506	cellular_component	plasmodesma
F	0009524	cellular_component	phragmoplast
F	0009707	cellular_component	chloroplast outer membrane
F	0009846	biological_process	pollen germination
F	0009860	biological_process	pollen tube growth
F	0010498	biological_process	proteasomal protein catabolic process
F	0015031	biological_process	protein transport
F	0016887	molecular_function	ATP hydrolysis activity
F	0022626	cellular_component	cytosolic ribosome
F	0030162	biological_process	regulation of proteolysis
F	0030970	biological_process	retrograde protein transport, ER to cytosol
F	0031348	biological_process	negative regulation of defense response
F	0031593	molecular_function	polyubiquitin modification-dependent protein binding
F	0031648	biological_process	protein destabilization
F	0031969	cellular_component	chloroplast membrane
F	0031981	cellular_component	nuclear lumen
F	0032991	cellular_component	protein-containing complex
F	0034098	cellular_component	VCP-NPL4-UFD1 AAA ATPase complex
F	0034614	biological_process	cellular response to reactive oxygen species
F	0042802	molecular_function	identical protein binding
F	0043161	biological_process	proteasome-mediated ubiquitin-dependent protein catabolic process
F	0051228	biological_process	mitotic spindle disassembly
F	0051301	biological_process	cell division
F	0097352	biological_process	autophagosome maturation
F	1902882	biological_process	regulation of response to oxidative stress

Functional Information from PROSITE/UniProt

site_id	PS00674
Number of Residues	19
Details	AAA AAA-protein family signature. ViVMgATNrpnsIDpALr.R

Chain	Residue	Details
A	VAL344-ARG362
A	VAL621-ARG639

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	60
Details	Binding site: {"evidences":[{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"AUG-2018","submissionDatabase":"PDB data bank","title":"Common mode of remodeling AAA ATPases p97/CDC48 by their disassembly cofactors ASPL/PUX1.","authors":["Heinemann U.","Roske Y.","Banchenko S.","Arumughan A.","Wanker E.","Petrovic S."]}},{"source":"PDB","id":"6HD3","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

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site_id	SWS_FT_FI2
Number of Residues	48
Details	Binding site: {"evidences":[{"evidenceCode":"ECO:0000305"}]}

Chain

Residue

Details

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site_id	SWS_FT_FI3
Number of Residues	6
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"17693538","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

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