9LOL
Cryo-EM structure of human MON1A-CCZ1-RAB7A
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005085 | molecular_function | guanyl-nucleotide exchange factor activity |
| A | 0005765 | cellular_component | lysosomal membrane |
| A | 0007034 | biological_process | vacuolar transport |
| A | 0016192 | biological_process | vesicle-mediated transport |
| A | 0035658 | cellular_component | Mon1-Ccz1 complex |
| C | 0000045 | biological_process | autophagosome assembly |
| C | 0000166 | molecular_function | nucleotide binding |
| C | 0000421 | cellular_component | autophagosome membrane |
| C | 0003924 | molecular_function | GTPase activity |
| C | 0003925 | molecular_function | G protein activity |
| C | 0005515 | molecular_function | protein binding |
| C | 0005525 | molecular_function | GTP binding |
| C | 0005739 | cellular_component | mitochondrion |
| C | 0005764 | cellular_component | lysosome |
| C | 0005765 | cellular_component | lysosomal membrane |
| C | 0005770 | cellular_component | late endosome |
| C | 0005811 | cellular_component | lipid droplet |
| C | 0005829 | cellular_component | cytosol |
| C | 0005886 | cellular_component | plasma membrane |
| C | 0006622 | biological_process | protein targeting to lysosome |
| C | 0006629 | biological_process | lipid metabolic process |
| C | 0006897 | biological_process | endocytosis |
| C | 0006914 | biological_process | autophagy |
| C | 0007174 | biological_process | epidermal growth factor catabolic process |
| C | 0008333 | biological_process | endosome to lysosome transport |
| C | 0009617 | biological_process | response to bacterium |
| C | 0010008 | cellular_component | endosome membrane |
| C | 0015031 | biological_process | protein transport |
| C | 0016042 | biological_process | lipid catabolic process |
| C | 0016787 | molecular_function | hydrolase activity |
| C | 0019003 | molecular_function | GDP binding |
| C | 0019076 | biological_process | viral release from host cell |
| C | 0022615 | biological_process | protein to membrane docking |
| C | 0030667 | cellular_component | secretory granule membrane |
| C | 0030670 | cellular_component | phagocytic vesicle membrane |
| C | 0030672 | cellular_component | synaptic vesicle membrane |
| C | 0030904 | cellular_component | retromer complex |
| C | 0031267 | molecular_function | small GTPase binding |
| C | 0031410 | cellular_component | cytoplasmic vesicle |
| C | 0031902 | cellular_component | late endosome membrane |
| C | 0031966 | cellular_component | mitochondrial membrane |
| C | 0032935 | molecular_function | sterol sensor activity |
| C | 0032991 | cellular_component | protein-containing complex |
| C | 0033162 | cellular_component | melanosome membrane |
| C | 0034045 | cellular_component | phagophore assembly site membrane |
| C | 0036466 | biological_process | synaptic vesicle recycling via endosome |
| C | 0042147 | biological_process | retrograde transport, endosome to Golgi |
| C | 0042632 | biological_process | cholesterol homeostasis |
| C | 0045022 | biological_process | early endosome to late endosome transport |
| C | 0045335 | cellular_component | phagocytic vesicle |
| C | 0045453 | biological_process | bone resorption |
| C | 0045732 | biological_process | positive regulation of protein catabolic process |
| C | 0048524 | biological_process | positive regulation of viral process |
| C | 0061462 | biological_process | protein localization to lysosome |
| C | 0061724 | biological_process | lipophagy |
| C | 0070062 | cellular_component | extracellular exosome |
| C | 0090120 | biological_process | lysosome to ER cholesterol transport |
| C | 0090382 | biological_process | phagosome maturation |
| C | 0090383 | biological_process | phagosome acidification |
| C | 0090385 | biological_process | phagosome-lysosome fusion |
| C | 0097208 | cellular_component | alveolar lamellar body |
| C | 0098588 | cellular_component | bounding membrane of organelle |
| C | 0098830 | cellular_component | presynaptic endosome |
| C | 0099638 | biological_process | endosome to plasma membrane protein transport |
| C | 1903542 | biological_process | negative regulation of exosomal secretion |
| C | 1903543 | biological_process | positive regulation of exosomal secretion |
| C | 1905366 | biological_process | negative regulation of intralumenal vesicle formation |
| C | 1905394 | molecular_function | retromer complex binding |
Functional Information from PROSITE/UniProt
| site_id | PS00675 |
| Number of Residues | 14 |
| Details | SIGMA54_INTERACT_1 Sigma-54 interaction domain ATP-binding region A signature. VIIlGDSGVGKtsL |
| Chain | Residue | Details |
| C | VAL11-LEU24 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 13 |
| Details | Motif: {"description":"Switch 1","evidences":[{"source":"PubMed","id":"15933719","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1T91","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1YHN","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 15 |
| Details | Motif: {"description":"Switch 2","evidences":[{"source":"PubMed","id":"15933719","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1T91","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1YHN","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"20028791","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"3LAW","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 8 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"15933719","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"20028791","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"1T91","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1YHN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3LAW","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"15933719","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"20028791","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1T91","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1YHN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3LAW","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"15933719","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1YHN","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI8 |
| Number of Residues | 1 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"15933719","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"20028791","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1YHN","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3LAW","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI9 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"Phosphoserine; by LRRK1","evidences":[{"source":"PubMed","id":"36040231","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"37857821","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18669648","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"20068231","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |






