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9K44

Cryo-EM structure of Arabidopsis thaliana H2A-H3.3-nucleosome with Arabidopsis native 147bp DNA 15.2.2 (C2 symmetry)

Functional Information from GO Data
ChainGOidnamespacecontents
A0000786cellular_componentnucleosome
A0000791cellular_componenteuchromatin
A0003677molecular_functionDNA binding
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005694cellular_componentchromosome
A0005730cellular_componentnucleolus
A0005886cellular_componentplasma membrane
A0030527molecular_functionstructural constituent of chromatin
A0030875cellular_componentrDNA protrusion
A0031492molecular_functionnucleosomal DNA binding
A0031507biological_processheterochromatin formation
A1990188molecular_functioneuchromatin binding
B0000325cellular_componentplant-type vacuole
B0000786cellular_componentnucleosome
B0003674molecular_functionmolecular_function
B0003677molecular_functionDNA binding
B0005515molecular_functionprotein binding
B0005576cellular_componentextracellular region
B0005634cellular_componentnucleus
B0005694cellular_componentchromosome
B0005730cellular_componentnucleolus
B0005777cellular_componentperoxisome
B0005794cellular_componentGolgi apparatus
B0005829cellular_componentcytosol
B0005886cellular_componentplasma membrane
B0006334biological_processnucleosome assembly
B0009414biological_processresponse to water deprivation
B0009506cellular_componentplasmodesma
B0009507cellular_componentchloroplast
B0009536cellular_componentplastid
B0009579cellular_componentthylakoid
B0030527molecular_functionstructural constituent of chromatin
C0000786cellular_componentnucleosome
C0003677molecular_functionDNA binding
C0005515molecular_functionprotein binding
C0005634cellular_componentnucleus
C0005694cellular_componentchromosome
C0005730cellular_componentnucleolus
C0009294biological_processDNA-mediated transformation
C0009536cellular_componentplastid
C0009611biological_processresponse to wounding
C0009617biological_processresponse to bacterium
C0030527molecular_functionstructural constituent of chromatin
C0031507biological_processheterochromatin formation
D0000786cellular_componentnucleosome
D0003677molecular_functionDNA binding
D0005515molecular_functionprotein binding
D0005576cellular_componentextracellular region
D0005634cellular_componentnucleus
D0005694cellular_componentchromosome
D0006325biological_processchromatin organization
D0009507cellular_componentchloroplast
D0030527molecular_functionstructural constituent of chromatin
E0000786cellular_componentnucleosome
E0000791cellular_componenteuchromatin
E0003677molecular_functionDNA binding
E0005515molecular_functionprotein binding
E0005634cellular_componentnucleus
E0005694cellular_componentchromosome
E0005730cellular_componentnucleolus
E0005886cellular_componentplasma membrane
E0030527molecular_functionstructural constituent of chromatin
E0030875cellular_componentrDNA protrusion
E0031492molecular_functionnucleosomal DNA binding
E0031507biological_processheterochromatin formation
E1990188molecular_functioneuchromatin binding
F0000325cellular_componentplant-type vacuole
F0000786cellular_componentnucleosome
F0003674molecular_functionmolecular_function
F0003677molecular_functionDNA binding
F0005515molecular_functionprotein binding
F0005576cellular_componentextracellular region
F0005634cellular_componentnucleus
F0005694cellular_componentchromosome
F0005730cellular_componentnucleolus
F0005777cellular_componentperoxisome
F0005794cellular_componentGolgi apparatus
F0005829cellular_componentcytosol
F0005886cellular_componentplasma membrane
F0006334biological_processnucleosome assembly
F0009414biological_processresponse to water deprivation
F0009506cellular_componentplasmodesma
F0009507cellular_componentchloroplast
F0009536cellular_componentplastid
F0009579cellular_componentthylakoid
F0030527molecular_functionstructural constituent of chromatin
G0000786cellular_componentnucleosome
G0003677molecular_functionDNA binding
G0005515molecular_functionprotein binding
G0005634cellular_componentnucleus
G0005694cellular_componentchromosome
G0005730cellular_componentnucleolus
G0009294biological_processDNA-mediated transformation
G0009536cellular_componentplastid
G0009611biological_processresponse to wounding
G0009617biological_processresponse to bacterium
G0030527molecular_functionstructural constituent of chromatin
G0031507biological_processheterochromatin formation
H0000786cellular_componentnucleosome
H0003677molecular_functionDNA binding
H0005515molecular_functionprotein binding
H0005576cellular_componentextracellular region
H0005634cellular_componentnucleus
H0005694cellular_componentchromosome
H0006325biological_processchromatin organization
H0009507cellular_componentchloroplast
H0030527molecular_functionstructural constituent of chromatin
Functional Information from PROSITE/UniProt
site_idPS00046
Number of Residues7
DetailsHISTONE_H2A Histone H2A signature. AGLqFPV
ChainResidueDetails
CALA22-VAL28

site_idPS00047
Number of Residues5
DetailsHISTONE_H4 Histone H4 signature. GAKRH
ChainResidueDetails
BGLY14-HIS18

site_idPS00322
Number of Residues7
DetailsHISTONE_H3_1 Histone H3 signature 1. KAPRKQL
ChainResidueDetails
ALYS14-LEU20

site_idPS00357
Number of Residues23
DetailsHISTONE_H2B Histone H2B signature. REIQTavRlVLpGELaKHAVSEG
ChainResidueDetails
DARG115-GLY137

site_idPS00959
Number of Residues9
DetailsHISTONE_H3_2 Histone H3 signature 2. PFqRLVREI
ChainResidueDetails
APRO66-ILE74

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"17554311","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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