9K3Z

Cryo-EM structure of Arabidopsis thaliana H2A.Z-nucleosome with Arabidopsis native 147bp DNA 15.2.2 (C2 symmetry)

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000786	cellular_component	nucleosome
A	0003674	molecular_function	molecular_function
A	0003677	molecular_function	DNA binding
A	0005515	molecular_function	protein binding
A	0005576	cellular_component	extracellular region
A	0005634	cellular_component	nucleus
A	0005694	cellular_component	chromosome
A	0005829	cellular_component	cytosol
A	0005886	cellular_component	plasma membrane
A	0009536	cellular_component	plastid
A	0010369	cellular_component	chromocenter
B	0000325	cellular_component	plant-type vacuole
B	0000786	cellular_component	nucleosome
B	0003674	molecular_function	molecular_function
B	0003677	molecular_function	DNA binding
B	0005515	molecular_function	protein binding
B	0005576	cellular_component	extracellular region
B	0005634	cellular_component	nucleus
B	0005694	cellular_component	chromosome
B	0005730	cellular_component	nucleolus
B	0005777	cellular_component	peroxisome
B	0005794	cellular_component	Golgi apparatus
B	0005829	cellular_component	cytosol
B	0005886	cellular_component	plasma membrane
B	0006334	biological_process	nucleosome assembly
B	0009414	biological_process	response to water deprivation
B	0009506	cellular_component	plasmodesma
B	0009507	cellular_component	chloroplast
B	0009536	cellular_component	plastid
B	0009579	cellular_component	thylakoid
B	0030527	molecular_function	structural constituent of chromatin
C	0000325	cellular_component	plant-type vacuole
C	0000786	cellular_component	nucleosome
C	0003677	molecular_function	DNA binding
C	0005515	molecular_function	protein binding
C	0005634	cellular_component	nucleus
C	0005694	cellular_component	chromosome
C	0009266	biological_process	response to temperature stimulus
C	0010468	biological_process	regulation of gene expression
C	0030527	molecular_function	structural constituent of chromatin
C	0031507	biological_process	heterochromatin formation
D	0000786	cellular_component	nucleosome
D	0003677	molecular_function	DNA binding
D	0005515	molecular_function	protein binding
D	0005576	cellular_component	extracellular region
D	0005634	cellular_component	nucleus
D	0005694	cellular_component	chromosome
D	0009507	cellular_component	chloroplast
E	0000786	cellular_component	nucleosome
E	0003674	molecular_function	molecular_function
E	0003677	molecular_function	DNA binding
E	0005515	molecular_function	protein binding
E	0005576	cellular_component	extracellular region
E	0005634	cellular_component	nucleus
E	0005694	cellular_component	chromosome
E	0005829	cellular_component	cytosol
E	0005886	cellular_component	plasma membrane
E	0009536	cellular_component	plastid
E	0010369	cellular_component	chromocenter
F	0000325	cellular_component	plant-type vacuole
F	0000786	cellular_component	nucleosome
F	0003674	molecular_function	molecular_function
F	0003677	molecular_function	DNA binding
F	0005515	molecular_function	protein binding
F	0005576	cellular_component	extracellular region
F	0005634	cellular_component	nucleus
F	0005694	cellular_component	chromosome
F	0005730	cellular_component	nucleolus
F	0005777	cellular_component	peroxisome
F	0005794	cellular_component	Golgi apparatus
F	0005829	cellular_component	cytosol
F	0005886	cellular_component	plasma membrane
F	0006334	biological_process	nucleosome assembly
F	0009414	biological_process	response to water deprivation
F	0009506	cellular_component	plasmodesma
F	0009507	cellular_component	chloroplast
F	0009536	cellular_component	plastid
F	0009579	cellular_component	thylakoid
F	0030527	molecular_function	structural constituent of chromatin
G	0000325	cellular_component	plant-type vacuole
G	0000786	cellular_component	nucleosome
G	0003677	molecular_function	DNA binding
G	0005515	molecular_function	protein binding
G	0005634	cellular_component	nucleus
G	0005694	cellular_component	chromosome
G	0009266	biological_process	response to temperature stimulus
G	0010468	biological_process	regulation of gene expression
G	0030527	molecular_function	structural constituent of chromatin
G	0031507	biological_process	heterochromatin formation
H	0000786	cellular_component	nucleosome
H	0003677	molecular_function	DNA binding
H	0005515	molecular_function	protein binding
H	0005576	cellular_component	extracellular region
H	0005634	cellular_component	nucleus
H	0005694	cellular_component	chromosome
H	0009507	cellular_component	chloroplast

Functional Information from PROSITE/UniProt

site_id	PS00046
Number of Residues	7
Details	HISTONE_H2A Histone H2A signature. AGLqFPV

Chain	Residue	Details
C	ALA32-VAL38

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site_id	PS00047
Number of Residues	5
Details	HISTONE_H4 Histone H4 signature. GAKRH

Chain	Residue	Details
B	GLY14-HIS18

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site_id	PS00322
Number of Residues	7
Details	HISTONE_H3_1 Histone H3 signature 1. KAPRKQL

Chain	Residue	Details
A	LYS14-LEU20

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site_id	PS00357
Number of Residues	23
Details	HISTONE_H2B Histone H2B signature. REIQTavRlVLpGELaKHAVSEG

Chain	Residue	Details
D	ARG115-GLY137

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site_id	PS00959
Number of Residues	9
Details	HISTONE_H3_2 Histone H3 signature 2. PFqRLVREI

Chain	Residue	Details
A	PRO66-ILE74

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	4
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"17554311","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

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