9HYF
Cryo-EM structure of the C. elegans UBR4/KCMF1 complex (composite map)
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0061630 | molecular_function | ubiquitin protein ligase activity |
| A | 0071596 | biological_process | ubiquitin-dependent protein catabolic process via the N-end rule pathway |
| A | 0140455 | biological_process | cytoplasm protein quality control |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0061630 | molecular_function | ubiquitin protein ligase activity |
| B | 0071596 | biological_process | ubiquitin-dependent protein catabolic process via the N-end rule pathway |
| B | 0140455 | biological_process | cytoplasm protein quality control |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0005764 | cellular_component | lysosome |
| C | 0005770 | cellular_component | late endosome |
| C | 0010646 | biological_process | regulation of cell communication |
| C | 0016567 | biological_process | protein ubiquitination |
| C | 0023051 | biological_process | regulation of signaling |
| C | 0043161 | biological_process | proteasome-mediated ubiquitin-dependent protein catabolic process |
| C | 0061630 | molecular_function | ubiquitin protein ligase activity |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0005764 | cellular_component | lysosome |
| D | 0005770 | cellular_component | late endosome |
| D | 0010646 | biological_process | regulation of cell communication |
| D | 0016567 | biological_process | protein ubiquitination |
| D | 0023051 | biological_process | regulation of signaling |
| D | 0043161 | biological_process | proteasome-mediated ubiquitin-dependent protein catabolic process |
| D | 0061630 | molecular_function | ubiquitin protein ligase activity |
Functional Information from PROSITE/UniProt
| site_id | PS01357 |
| Number of Residues | 28 |
| Details | ZF_ZZ_1 Zinc finger ZZ-type signature. CdgCaftafagnRYkClr...CsDYdLCfsC |
| Chain | Residue | Details |
| C | CYS14-CYS41 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 98 |
| Details | Repeat: {"description":"WD 4","evidences":[{"source":"PubMed","id":"40875847","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"9QX1","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 104 |
| Details | Repeat: {"description":"WD 5","evidences":[{"source":"PubMed","id":"40875847","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"9QX1","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 86 |
| Details | Repeat: {"description":"WD 6","evidences":[{"source":"PubMed","id":"40875847","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"9QX1","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 106 |
| Details | Repeat: {"description":"WD 7","evidences":[{"source":"PubMed","id":"40875847","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"9QX1","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 220 |
| Details | Domain: {"description":"Ubiquitin-like","evidences":[{"source":"UniProtKB","id":"Q5T4S7","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 28 |
| Details | Binding site: {"evidences":[{"source":"UniProtKB","id":"Q5T4S7","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 8 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"40875847","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"9QX1","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI8 |
| Number of Residues | 128 |
| Details | Zinc finger: {"description":"ZZ-type","evidences":[{"source":"UniProtKB","id":"Q9P0J7","evidenceCode":"ECO:0000250"},{"source":"PROSITE-ProRule","id":"PRU00228","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI9 |
| Number of Residues | 46 |
| Details | Zinc finger: {"description":"C2H2-type","evidences":[{"source":"UniProtKB","id":"Q9P0J7","evidenceCode":"ECO:0000250"},{"source":"PROSITE-ProRule","id":"PRU00042","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI10 |
| Number of Residues | 16 |
| Details | Binding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00228","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI11 |
| Number of Residues | 12 |
| Details | Binding site: {"evidences":[{"source":"UniProtKB","id":"Q9P0J7","evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
