Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

9GYT

High resolution structure of B. oleracea mitoribosome

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
1a	0003735	molecular_function	structural constituent of ribosome
1a	0005761	cellular_component	mitochondrial ribosome
1a	0005840	cellular_component	ribosome
1a	0006412	biological_process	translation
1b	0003735	molecular_function	structural constituent of ribosome
1b	0006412	biological_process	translation
1b	0015934	cellular_component	large ribosomal subunit
1B	0003723	molecular_function	RNA binding
1B	0003735	molecular_function	structural constituent of ribosome
1B	0005739	cellular_component	mitochondrion
1B	0005762	cellular_component	mitochondrial large ribosomal subunit
1B	0005840	cellular_component	ribosome
1B	0006412	biological_process	translation
1B	0032543	biological_process	mitochondrial translation
1C	0003735	molecular_function	structural constituent of ribosome
1C	0005840	cellular_component	ribosome
1C	0006412	biological_process	translation
1d	0003735	molecular_function	structural constituent of ribosome
1d	0006412	biological_process	translation
1d	0015934	cellular_component	large ribosomal subunit
1D	0003735	molecular_function	structural constituent of ribosome
1D	0005840	cellular_component	ribosome
1D	0006412	biological_process	translation
1e	0003735	molecular_function	structural constituent of ribosome
1e	0005840	cellular_component	ribosome
1e	0006412	biological_process	translation
1E	0003735	molecular_function	structural constituent of ribosome
1E	0005840	cellular_component	ribosome
1E	0006412	biological_process	translation
1f	0003735	molecular_function	structural constituent of ribosome
1f	0005762	cellular_component	mitochondrial large ribosomal subunit
1f	0005840	cellular_component	ribosome
1f	0006412	biological_process	translation
1F	0003735	molecular_function	structural constituent of ribosome
1F	0005840	cellular_component	ribosome
1F	0006412	biological_process	translation
1g	0003735	molecular_function	structural constituent of ribosome
1g	0005840	cellular_component	ribosome
1g	0006412	biological_process	translation
1G	0003735	molecular_function	structural constituent of ribosome
1G	0005840	cellular_component	ribosome
1G	0006412	biological_process	translation
1G	0019843	molecular_function	rRNA binding
1h	0003735	molecular_function	structural constituent of ribosome
1h	0005840	cellular_component	ribosome
1h	0006412	biological_process	translation
1h	0009536	cellular_component	plastid
1H	0003735	molecular_function	structural constituent of ribosome
1H	0005840	cellular_component	ribosome
1H	0006412	biological_process	translation
1i	0005761	cellular_component	mitochondrial ribosome
1i	0005762	cellular_component	mitochondrial large ribosomal subunit
1j	0003735	molecular_function	structural constituent of ribosome
1j	0005762	cellular_component	mitochondrial large ribosomal subunit
1J	0003735	molecular_function	structural constituent of ribosome
1J	0005840	cellular_component	ribosome
1J	0006412	biological_process	translation
1k	0003735	molecular_function	structural constituent of ribosome
1k	0005739	cellular_component	mitochondrion
1k	0005762	cellular_component	mitochondrial large ribosomal subunit
1k	0032543	biological_process	mitochondrial translation
1K	0003729	molecular_function	mRNA binding
1K	0003735	molecular_function	structural constituent of ribosome
1K	0005762	cellular_component	mitochondrial large ribosomal subunit
1K	0005840	cellular_component	ribosome
1K	0006412	biological_process	translation
1K	0017148	biological_process	negative regulation of translation
1l	0003735	molecular_function	structural constituent of ribosome
1L	0003735	molecular_function	structural constituent of ribosome
1L	0005762	cellular_component	mitochondrial large ribosomal subunit
1L	0005840	cellular_component	ribosome
1L	0006412	biological_process	translation
1L	0015934	cellular_component	large ribosomal subunit
1L	0070180	molecular_function	large ribosomal subunit rRNA binding
1M	0003735	molecular_function	structural constituent of ribosome
1M	0006412	biological_process	translation
1M	0015934	cellular_component	large ribosomal subunit
1N	0003735	molecular_function	structural constituent of ribosome
1N	0005739	cellular_component	mitochondrion
1N	0005762	cellular_component	mitochondrial large ribosomal subunit
1N	0005840	cellular_component	ribosome
1N	0006412	biological_process	translation
1N	0019843	molecular_function	rRNA binding
1N	0032543	biological_process	mitochondrial translation
1O	0003735	molecular_function	structural constituent of ribosome
1O	0005840	cellular_component	ribosome
1O	0006412	biological_process	translation
1O	0015934	cellular_component	large ribosomal subunit
1O	0022625	cellular_component	cytosolic large ribosomal subunit
1P	0003735	molecular_function	structural constituent of ribosome
1P	0005840	cellular_component	ribosome
1P	0006412	biological_process	translation
1P	0008097	molecular_function	5S rRNA binding
1Q	0003735	molecular_function	structural constituent of ribosome
1Q	0005840	cellular_component	ribosome
1Q	0006412	biological_process	translation
1R	0003735	molecular_function	structural constituent of ribosome
1R	0005840	cellular_component	ribosome
1R	0006412	biological_process	translation
1R	0019843	molecular_function	rRNA binding
1s	0005739	cellular_component	mitochondrion
1S	0003723	molecular_function	RNA binding
1S	0003735	molecular_function	structural constituent of ribosome
1S	0005840	cellular_component	ribosome
1S	0006412	biological_process	translation
1T	0003735	molecular_function	structural constituent of ribosome
1T	0005762	cellular_component	mitochondrial large ribosomal subunit
1T	0005840	cellular_component	ribosome
1T	0006412	biological_process	translation
1T	0015934	cellular_component	large ribosomal subunit
1U	0003735	molecular_function	structural constituent of ribosome
1U	0005840	cellular_component	ribosome
1U	0006412	biological_process	translation
1V	0003723	molecular_function	RNA binding
1V	0003735	molecular_function	structural constituent of ribosome
1V	0005840	cellular_component	ribosome
1V	0006412	biological_process	translation
1W	0003735	molecular_function	structural constituent of ribosome
1W	0005840	cellular_component	ribosome
1W	0006412	biological_process	translation
1X	0003735	molecular_function	structural constituent of ribosome
1X	0005840	cellular_component	ribosome
1X	0006412	biological_process	translation
1X	0008097	molecular_function	5S rRNA binding
1X	0022625	cellular_component	cytosolic large ribosomal subunit
1Y	0003735	molecular_function	structural constituent of ribosome
1Y	0005840	cellular_component	ribosome
1Y	0006412	biological_process	translation
1Z	0003735	molecular_function	structural constituent of ribosome
a	0003735	molecular_function	structural constituent of ribosome
a	0032543	biological_process	mitochondrial translation
A	0003735	molecular_function	structural constituent of ribosome
A	0005763	cellular_component	mitochondrial small ribosomal subunit
A	0005840	cellular_component	ribosome
A	0006412	biological_process	translation
A	0015935	cellular_component	small ribosomal subunit
b	0003735	molecular_function	structural constituent of ribosome
b	0032543	biological_process	mitochondrial translation
B	0003723	molecular_function	RNA binding
B	0003735	molecular_function	structural constituent of ribosome
B	0005739	cellular_component	mitochondrion
B	0006412	biological_process	translation
C	0003723	molecular_function	RNA binding
C	0019843	molecular_function	rRNA binding
D	0003723	molecular_function	RNA binding
D	0003729	molecular_function	mRNA binding
D	0003735	molecular_function	structural constituent of ribosome
D	0005737	cellular_component	cytoplasm
D	0005840	cellular_component	ribosome
D	0006412	biological_process	translation
D	1990904	cellular_component	ribonucleoprotein complex
e	0005739	cellular_component	mitochondrion
e	0007154	biological_process	cell communication
e	0009793	biological_process	embryo development ending in seed dormancy
e	0048868	biological_process	pollen tube development
E	0003735	molecular_function	structural constituent of ribosome
E	0005737	cellular_component	cytoplasm
E	0005840	cellular_component	ribosome
E	0006412	biological_process	translation
E	0019843	molecular_function	rRNA binding
E	0070181	molecular_function	small ribosomal subunit rRNA binding
f	0003860	molecular_function	3-hydroxyisobutyryl-CoA hydrolase activity
F	0003723	molecular_function	RNA binding
F	0003735	molecular_function	structural constituent of ribosome
F	0005739	cellular_component	mitochondrion
F	0005763	cellular_component	mitochondrial small ribosomal subunit
F	0006412	biological_process	translation
F	0015935	cellular_component	small ribosomal subunit
F	0019843	molecular_function	rRNA binding
g	0003729	molecular_function	mRNA binding
g	0005739	cellular_component	mitochondrion
g	0008380	biological_process	RNA splicing
G	0003735	molecular_function	structural constituent of ribosome
G	0005840	cellular_component	ribosome
G	0006412	biological_process	translation
H	0003735	molecular_function	structural constituent of ribosome
H	0005840	cellular_component	ribosome
H	0006412	biological_process	translation
I	0003735	molecular_function	structural constituent of ribosome
I	0005840	cellular_component	ribosome
I	0006412	biological_process	translation
J	0003735	molecular_function	structural constituent of ribosome
J	0005840	cellular_component	ribosome
J	0006412	biological_process	translation
k	0003676	molecular_function	nucleic acid binding
k	0003723	molecular_function	RNA binding
K	0003735	molecular_function	structural constituent of ribosome
K	0005840	cellular_component	ribosome
K	0006412	biological_process	translation
K	0015935	cellular_component	small ribosomal subunit
l	0003729	molecular_function	mRNA binding
l	0005739	cellular_component	mitochondrion
l	0008150	biological_process	biological_process
L	0003676	molecular_function	nucleic acid binding
L	0003723	molecular_function	RNA binding
L	0003735	molecular_function	structural constituent of ribosome
L	0005739	cellular_component	mitochondrion
L	0005840	cellular_component	ribosome
L	0006412	biological_process	translation
L	0015935	cellular_component	small ribosomal subunit
M	0003735	molecular_function	structural constituent of ribosome
M	0005840	cellular_component	ribosome
M	0006412	biological_process	translation
N	0003735	molecular_function	structural constituent of ribosome
N	0005737	cellular_component	cytoplasm
N	0005840	cellular_component	ribosome
N	0006412	biological_process	translation
N	0009536	cellular_component	plastid
O	0003735	molecular_function	structural constituent of ribosome
O	0005739	cellular_component	mitochondrion
O	0005840	cellular_component	ribosome
O	0006412	biological_process	translation
O	0009507	cellular_component	chloroplast
O	0009536	cellular_component	plastid
O	0015935	cellular_component	small ribosomal subunit
O	0032543	biological_process	mitochondrial translation
P	0003735	molecular_function	structural constituent of ribosome
P	0005840	cellular_component	ribosome
P	0006412	biological_process	translation
Q	0003735	molecular_function	structural constituent of ribosome
Q	0005840	cellular_component	ribosome
Q	0006412	biological_process	translation
R	0003676	molecular_function	nucleic acid binding
R	0003723	molecular_function	RNA binding
R	0003729	molecular_function	mRNA binding
R	0003735	molecular_function	structural constituent of ribosome
R	0005737	cellular_component	cytoplasm
R	0005739	cellular_component	mitochondrion
R	0005763	cellular_component	mitochondrial small ribosomal subunit
R	0005840	cellular_component	ribosome
R	0006412	biological_process	translation
R	0009507	cellular_component	chloroplast
R	0015935	cellular_component	small ribosomal subunit
S	0003735	molecular_function	structural constituent of ribosome
S	0005840	cellular_component	ribosome
S	0006412	biological_process	translation
T	0005840	cellular_component	ribosome
T	0009536	cellular_component	plastid
T	0032544	biological_process	plastid translation
W	0003735	molecular_function	structural constituent of ribosome
W	0005739	cellular_component	mitochondrion
W	0005763	cellular_component	mitochondrial small ribosomal subunit
Z	0003735	molecular_function	structural constituent of ribosome
Z	0005739	cellular_component	mitochondrion

Functional Information from PROSITE/UniProt

site_id	PS00049
Number of Residues	27
Details	RIBOSOMAL_L14 Ribosomal protein L14 signature. GVVVraamqrgrv.DGsevrFddNavVL

Chain	Residue	Details
1L	GLY104-LEU130

site_id	PS00052
Number of Residues	27
Details	RIBOSOMAL_S7 Ribosomal protein S7 signature. KlLikkLVnfrmkeGKRtrvraIVyqT

Chain	Residue	Details
F	LYS9-THR35

site_id	PS00053
Number of Residues	18
Details	RIBOSOMAL_S8 Ribosomal protein S8 signature. GyvVVTTPdGILdheeAI

Chain	Residue	Details
G	GLY99-ILE116

site_id	PS00055
Number of Residues	8
Details	RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR

Chain	Residue	Details
K	LYS43-ARG50

site_id	PS00216
Number of Residues	16
Details	SUGAR_TRANSPORT_1 Sugar transport proteins signature 1. VSLFVDYFGRRkdfk..G

Chain	Residue	Details
1v	VAL146-GLY161

site_id	PS00323
Number of Residues	25
Details	RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKthvrckItegkVGhkFGEFafT

Chain	Residue	Details
R	ASN178-THR202

site_id	PS00360
Number of Residues	19
Details	RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGttGQvgAiqlGiSRAL

Chain	Residue	Details
H	GLY369-LEU387

site_id	PS00467
Number of Residues	12
Details	RIBOSOMAL_L2 Ribosomal protein L2 signature. PkvRGVAmNPcD

Chain	Residue	Details
1B	PRO152-ASP163

site_id	PS00474
Number of Residues	24
Details	RIBOSOMAL_L3 Ribosomal protein L3 signature. FvpgqyvDvtGiTrGKGfqGvmkR

Chain	Residue	Details
1D	PHE176-ARG199

site_id	PS00525
Number of Residues	9
Details	RIBOSOMAL_L6_1 Ribosomal protein L6 signature 1. PEvYKGKGI

Chain	Residue	Details
1G	PRO78-ILE86

site_id	PS00527
Number of Residues	23
Details	RIBOSOMAL_S14 Ribosomal protein S14 signature. R.CvftgrsrsvtelFRMSRiCFR

Chain	Residue	Details
M	ARG126-ARG148

site_id	PS00586
Number of Residues	12
Details	RIBOSOMAL_L16_1 Ribosomal protein L16 signature 1. RRnGKIWVRVFA

Chain	Residue	Details
1N	ARG103-ALA114

site_id	PS00646
Number of Residues	14
Details	RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGsRHrhGmpCRGQ

Chain	Residue	Details
L	ARG116-GLN129

site_id	PS00701
Number of Residues	12
Details	RIBOSOMAL_L16_2 Ribosomal protein L16 signature 2. RMGrGKGnptgW

Chain	Residue	Details
1N	ARG126-TRP137

site_id	PS00784
Number of Residues	20
Details	RIBOSOMAL_L34 Ribosomal protein L34 signature. KRTFQpstirRkrnh.GFfaR

Chain	Residue	Details
1f	LYS159-ARG178

site_id	PS00828
Number of Residues	27
Details	RIBOSOMAL_L36 Ribosomal protein L36 signature. CefCktVkRrgrVyViCssnpKHkQrQ

Chain	Residue	Details
1h	CYS11-GLN37

site_id	PS00831
Number of Residues	15
Details	RIBOSOMAL_L27 Ribosomal protein L27 signature. GnIIvRQRGtrfhpG

Chain	Residue	Details
1Y	GLY79-GLY93

site_id	PS00962
Number of Residues	12
Details	RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. IqKLLNTGSHLG

Chain	Residue	Details
A	ILE8-GLY19

site_id	PS01108
Number of Residues	18
Details	RIBOSOMAL_L24 Ribosomal protein L24 signature. GDnVmIIrGkdKGet.GtV

Chain	Residue	Details
1V	GLY18-VAL35

site_id	PS01169
Number of Residues	23
Details	RIBOSOMAL_L21 Ribosomal protein L21 signature. VlifKkkrRKnyrrttGHRQelT

Chain	Residue	Details
1S	VAL212-THR234

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI8
Number of Residues	68
Details	Repeat: {"description":"PPR 1"}

Chain

Residue

Details

site_id	SWS_FT_FI9
Number of Residues	68
Details	Repeat: {"description":"PPR 2"}

Chain

Residue

Details

site_id	SWS_FT_FI10
Number of Residues	70
Details	Repeat: {"description":"PPR 3"}

Chain

Residue

Details

site_id	SWS_FT_FI11
Number of Residues	63
Details	Repeat: {"description":"PPR 4"}

Chain

Residue

Details

site_id	SWS_FT_FI12
Number of Residues	64
Details	Repeat: {"description":"PPR 5"}

Chain

Residue

Details

site_id	SWS_FT_FI13
Number of Residues	69
Details	Repeat: {"description":"PPR 6"}

Chain

Residue

Details

site_id	SWS_FT_FI14
Number of Residues	68
Details	Repeat: {"description":"PPR 7"}

Chain

Residue

Details

site_id	SWS_FT_FI17
Number of Residues	34
Details	Repeat: {"description":"PPR 8"}

Chain

Residue

Details

site_id	SWS_FT_FI18
Number of Residues	35
Details	Repeat: {"description":"PPR 9"}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)