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9GLR

Crystal Structure of Human UBC9 C93E

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
AAA0000122biological_processnegative regulation of transcription by RNA polymerase II
AAA0000166molecular_functionnucleotide binding
AAA0000795cellular_componentsynaptonemal complex
AAA0001221molecular_functiontranscription coregulator binding
AAA0003723molecular_functionRNA binding
AAA0005515molecular_functionprotein binding
AAA0005524molecular_functionATP binding
AAA0005634cellular_componentnucleus
AAA0005635cellular_componentnuclear envelope
AAA0005654cellular_componentnucleoplasm
AAA0005730cellular_componentnucleolus
AAA0005737cellular_componentcytoplasm
AAA0005829cellular_componentcytosol
AAA0006511biological_processubiquitin-dependent protein catabolic process
AAA0007059biological_processchromosome segregation
AAA0007084biological_processmitotic nuclear membrane reassembly
AAA0008134molecular_functiontranscription factor binding
AAA0016604cellular_componentnuclear body
AAA0016605cellular_componentPML body
AAA0016740molecular_functiontransferase activity
AAA0016925biological_processprotein sumoylation
AAA0019789molecular_functionSUMO transferase activity
AAA0019899molecular_functionenzyme binding
AAA0030335biological_processpositive regulation of cell migration
AAA0036211biological_processprotein modification process
AAA0043398molecular_functionHLH domain binding
AAA0044388molecular_functionsmall protein activating enzyme binding
AAA0045892biological_processnegative regulation of DNA-templated transcription
AAA0048471cellular_componentperinuclear region of cytoplasm
AAA0050804biological_processmodulation of chemical synaptic transmission
AAA0051168biological_processnuclear export
AAA0051170biological_processimport into nucleus
AAA0051301biological_processcell division
AAA0061656molecular_functionSUMO conjugating enzyme activity
AAA0071535molecular_functionRING-like zinc finger domain binding
AAA0098685cellular_componentSchaffer collateral - CA1 synapse
AAA0098978cellular_componentglutamatergic synapse
AAA0099523cellular_componentpresynaptic cytosol
AAA0099524cellular_componentpostsynaptic cytosol
AAA0106068cellular_componentSUMO ligase complex
AAA1990234cellular_componenttransferase complex
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues153
DetailsDomain: {"description":"UBC core","evidences":[{"source":"PROSITE-ProRule","id":"PRU00388","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues5
DetailsRegion: {"description":"Interaction with SUMO1"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues1
DetailsActive site: {"description":"Glycyl thioester intermediate"}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues3
DetailsSite: {"description":"Interaction with RANBP2"}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues1
DetailsSite: {"description":"Substrate binding"}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues1
DetailsModified residue: {"description":"N-acetylserine","evidences":[{"source":"PubMed","id":"19413330","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"22814378","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues1
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues1
DetailsModified residue: {"description":"Phosphoserine; by CDK1","evidences":[{"source":"PubMed","id":"22509284","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues1
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate"}
ChainResidueDetails

site_idSWS_FT_FI10
Number of Residues2
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)","evidences":[{"source":"PubMed","id":"28112733","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI11
Number of Residues1
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)","evidences":[{"source":"PubMed","id":"25755297","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"28112733","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI12
Number of Residues1
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate","evidences":[{"source":"PubMed","id":"25114211","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"25218447","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"25755297","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"25772364","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"28112733","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

248636

PDB entries from 2026-02-04

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