Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

9GD3

Structure of a mononucleosome bound by one copy of Chd1 with the DBD on the exit-side DNA.

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000786	cellular_component	nucleosome
A	0003677	molecular_function	DNA binding
A	0005515	molecular_function	protein binding
A	0005634	cellular_component	nucleus
A	0005654	cellular_component	nucleoplasm
A	0005694	cellular_component	chromosome
A	0030527	molecular_function	structural constituent of chromatin
A	0046982	molecular_function	protein heterodimerization activity
B	0000786	cellular_component	nucleosome
B	0003677	molecular_function	DNA binding
B	0005515	molecular_function	protein binding
B	0005634	cellular_component	nucleus
B	0005694	cellular_component	chromosome
B	0006334	biological_process	nucleosome assembly
B	0030527	molecular_function	structural constituent of chromatin
B	0046982	molecular_function	protein heterodimerization activity
C	0000786	cellular_component	nucleosome
C	0003677	molecular_function	DNA binding
C	0005634	cellular_component	nucleus
C	0005694	cellular_component	chromosome
C	0030527	molecular_function	structural constituent of chromatin
C	0031507	biological_process	heterochromatin formation
C	0046982	molecular_function	protein heterodimerization activity
D	0000786	cellular_component	nucleosome
D	0003677	molecular_function	DNA binding
D	0005515	molecular_function	protein binding
D	0005634	cellular_component	nucleus
D	0005694	cellular_component	chromosome
D	0030527	molecular_function	structural constituent of chromatin
D	0046982	molecular_function	protein heterodimerization activity
E	0000786	cellular_component	nucleosome
E	0003677	molecular_function	DNA binding
E	0005515	molecular_function	protein binding
E	0005634	cellular_component	nucleus
E	0005654	cellular_component	nucleoplasm
E	0005694	cellular_component	chromosome
E	0030527	molecular_function	structural constituent of chromatin
E	0046982	molecular_function	protein heterodimerization activity
F	0000786	cellular_component	nucleosome
F	0003677	molecular_function	DNA binding
F	0005515	molecular_function	protein binding
F	0005634	cellular_component	nucleus
F	0005694	cellular_component	chromosome
F	0006334	biological_process	nucleosome assembly
F	0030527	molecular_function	structural constituent of chromatin
F	0046982	molecular_function	protein heterodimerization activity
G	0000786	cellular_component	nucleosome
G	0003677	molecular_function	DNA binding
G	0005634	cellular_component	nucleus
G	0005694	cellular_component	chromosome
G	0030527	molecular_function	structural constituent of chromatin
G	0031507	biological_process	heterochromatin formation
G	0046982	molecular_function	protein heterodimerization activity
H	0000786	cellular_component	nucleosome
H	0003677	molecular_function	DNA binding
H	0005515	molecular_function	protein binding
H	0005634	cellular_component	nucleus
H	0005694	cellular_component	chromosome
H	0030527	molecular_function	structural constituent of chromatin
H	0046982	molecular_function	protein heterodimerization activity
T	0000123	cellular_component	histone acetyltransferase complex
T	0000124	cellular_component	SAGA complex
T	0000166	molecular_function	nucleotide binding
T	0000182	molecular_function	rDNA binding
T	0000724	biological_process	double-strand break repair via homologous recombination
T	0000729	biological_process	DNA double-strand break processing
T	0000785	cellular_component	chromatin
T	0000976	molecular_function	transcription cis-regulatory region binding
T	0001178	biological_process	regulation of transcriptional start site selection at RNA polymerase II promoter
T	0003677	molecular_function	DNA binding
T	0003682	molecular_function	chromatin binding
T	0005524	molecular_function	ATP binding
T	0005634	cellular_component	nucleus
T	0005739	cellular_component	mitochondrion
T	0006325	biological_process	chromatin organization
T	0006338	biological_process	chromatin remodeling
T	0006357	biological_process	regulation of transcription by RNA polymerase II
T	0006363	biological_process	termination of RNA polymerase I transcription
T	0006366	biological_process	transcription by RNA polymerase II
T	0006368	biological_process	transcription elongation by RNA polymerase II
T	0006369	biological_process	termination of RNA polymerase II transcription
T	0007062	biological_process	sister chromatid cohesion
T	0008094	molecular_function	ATP-dependent activity, acting on DNA
T	0010468	biological_process	regulation of gene expression
T	0016787	molecular_function	hydrolase activity
T	0016887	molecular_function	ATP hydrolysis activity
T	0030874	cellular_component	nucleolar chromatin
T	0031490	molecular_function	chromatin DNA binding
T	0034728	biological_process	nucleosome organization
T	0035861	cellular_component	site of double-strand break
T	0042393	molecular_function	histone binding
T	0046695	cellular_component	SLIK (SAGA-like) complex
T	0140002	molecular_function	histone H3K4me3 reader activity
T	0140658	molecular_function	ATP-dependent chromatin remodeler activity
T	1902275	biological_process	regulation of chromatin organization
T	2000104	biological_process	negative regulation of DNA-templated DNA replication
W	0000123	cellular_component	histone acetyltransferase complex
W	0000124	cellular_component	SAGA complex
W	0000166	molecular_function	nucleotide binding
W	0000182	molecular_function	rDNA binding
W	0000724	biological_process	double-strand break repair via homologous recombination
W	0000729	biological_process	DNA double-strand break processing
W	0000785	cellular_component	chromatin
W	0000976	molecular_function	transcription cis-regulatory region binding
W	0001178	biological_process	regulation of transcriptional start site selection at RNA polymerase II promoter
W	0003677	molecular_function	DNA binding
W	0003682	molecular_function	chromatin binding
W	0005524	molecular_function	ATP binding
W	0005634	cellular_component	nucleus
W	0005739	cellular_component	mitochondrion
W	0006325	biological_process	chromatin organization
W	0006338	biological_process	chromatin remodeling
W	0006357	biological_process	regulation of transcription by RNA polymerase II
W	0006363	biological_process	termination of RNA polymerase I transcription
W	0006366	biological_process	transcription by RNA polymerase II
W	0006368	biological_process	transcription elongation by RNA polymerase II
W	0006369	biological_process	termination of RNA polymerase II transcription
W	0007062	biological_process	sister chromatid cohesion
W	0008094	molecular_function	ATP-dependent activity, acting on DNA
W	0010468	biological_process	regulation of gene expression
W	0016787	molecular_function	hydrolase activity
W	0016887	molecular_function	ATP hydrolysis activity
W	0030874	cellular_component	nucleolar chromatin
W	0031490	molecular_function	chromatin DNA binding
W	0034728	biological_process	nucleosome organization
W	0035861	cellular_component	site of double-strand break
W	0042393	molecular_function	histone binding
W	0046695	cellular_component	SLIK (SAGA-like) complex
W	0140002	molecular_function	histone H3K4me3 reader activity
W	0140658	molecular_function	ATP-dependent chromatin remodeler activity
W	1902275	biological_process	regulation of chromatin organization
W	2000104	biological_process	negative regulation of DNA-templated DNA replication

Functional Information from PROSITE/UniProt

site_id	PS00046
Number of Residues	7
Details	HISTONE_H2A Histone H2A signature. AGLqFPV

Chain	Residue	Details
C	ALA21-VAL27

site_id	PS00047
Number of Residues	5
Details	HISTONE_H4 Histone H4 signature. GAKRH

Chain	Residue	Details
B	GLY14-HIS18

site_id	PS00322
Number of Residues	7
Details	HISTONE_H3_1 Histone H3 signature 1. KAPRKQL

Chain	Residue	Details
A	LYS14-LEU20

site_id	PS00357
Number of Residues	23
Details	HISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG

Chain	Residue	Details
D	ARG89-GLY111

site_id	PS00598
Number of Residues	21
Details	CHROMO_1 Chromo domain signature. FlIKWtDEshlhn.TWETyesI

Chain	Residue	Details
T	PHE213-ILE233
T	TYR307-ILE327

site_id	PS00959
Number of Residues	9
Details	HISTONE_H3_2 Histone H3 signature 2. PFqRLVREI

Chain	Residue	Details
A	PRO66-ILE74

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	2
Details	BINDING: BINDING => ECO:0000255\|PROSITE-ProRule:PRU00541

Chain	Residue	Details
T	ASP401
W	ASP401
D	LYS12
D	LYS17
H	LYS2
H	LYS9
H	LYS12
H	LYS17

site_id	SWS_FT_FI2
Number of Residues	2
Details	MOD_RES: Phosphoserine => ECO:0007744\|PubMed:17330950, ECO:0007744\|PubMed:18407956, ECO:0007744\|PubMed:19779198

Chain	Residue	Details
T	SER36
W	SER36

site_id	SWS_FT_FI3
Number of Residues	2
Details	MOD_RES: Phosphoserine => ECO:0007744\|PubMed:19779198

Chain	Residue	Details
T	SER72
W	SER72
G	LYS9
G	LYS95

site_id	SWS_FT_FI4
Number of Residues	6
Details	MOD_RES: Phosphoserine => ECO:0007744\|PubMed:18407956, ECO:0007744\|PubMed:19779198

Chain	Residue	Details
T	SER987
T	SER989
T	SER1336
W	SER987
W	SER989
W	SER1336

site_id	SWS_FT_FI5
Number of Residues	2
Details	MOD_RES: Phosphoserine => ECO:0007744\|PubMed:17287358

Chain	Residue	Details
T	SER1364
W	SER1364
G	LYS74
G	LYS75
F	LYS8
F	LYS16
F	LYS44
F	LYS79

site_id	SWS_FT_FI6
Number of Residues	2
Details	MOD_RES: Phosphoserine => ECO:0007744\|PubMed:18407956

Chain	Residue	Details
T	SER1372
W	SER1372
F	LYS12
F	LYS20

site_id	SWS_FT_FI7
Number of Residues	4
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269\|PubMed:12872131

Chain	Residue	Details
T	LYS1144
G	LYS118
W	LYS1144
F	LYS91

site_id	SWS_FT_FI8
Number of Residues	8
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250

Chain	Residue	Details
C	LYS13
F	SER47
C	LYS15
C	LYS119
G	LYS13
G	LYS15
G	LYS119

site_id	SWS_FT_FI9
Number of Residues	4
Details	MOD_RES: Phosphotyrosine => ECO:0000250\|UniProtKB:P62805

Chain	Residue	Details
B	TYR51
B	TYR88
F	TYR51
F	TYR88

site_id	SWS_FT_FI10
Number of Residues	2
Details	MOD_RES: N6-glutaryllysine; alternate => ECO:0000250\|UniProtKB:P62805

Chain	Residue	Details
B	LYS59
E	LYS64
F	LYS59
A	LYS27
A	LYS36
A	LYS64
E	LYS18
E	LYS23
E	LYS27
E	LYS36

site_id	SWS_FT_FI11
Number of Residues	2
Details	MOD_RES: N6-succinyllysine => ECO:0000250\|UniProtKB:P62805

Chain	Residue	Details
B	LYS77
F	LYS77

site_id	SWS_FT_FI12
Number of Residues	2
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in UFM1); alternate => ECO:0000250\|UniProtKB:P62805

Chain	Residue	Details
B	LYS31
F	LYS31

site_id	SWS_FT_FI13
Number of Residues	4
Details	CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000250\|UniProtKB:P62805

Chain	Residue	Details
A	LYS37
B	LYS91
F	LYS91

site_id	SWS_FT_FI14
Number of Residues	2
Details	MOD_RES: Phosphotyrosine => ECO:0000250\|UniProtKB:Q71DI3

Chain	Residue	Details
A	TYR41
E	TYR41

site_id	SWS_FT_FI15
Number of Residues	4
Details	MOD_RES: N6-succinyllysine; alternate => ECO:0000250\|UniProtKB:P84228

Chain	Residue	Details
A	LYS56
A	LYS79
E	LYS56
E	LYS79

site_id	SWS_FT_FI16
Number of Residues	2
Details	MOD_RES: Phosphoserine => ECO:0000250\|UniProtKB:Q71DI3

Chain	Residue	Details
A	SER57
E	SER57

site_id	SWS_FT_FI17
Number of Residues	4
Details	MOD_RES: Phosphothreonine => ECO:0000250\|UniProtKB:Q71DI3

Chain	Residue	Details
A	THR80
A	THR107
E	THR80
E	THR107

site_id	SWS_FT_FI18
Number of Residues	2
Details	MOD_RES: Phosphoserine => ECO:0000250\|UniProtKB:P84243

Chain	Residue	Details
A	SER86
E	SER86

site_id	SWS_FT_FI19
Number of Residues	2
Details	MOD_RES: N6-glutaryllysine; alternate => ECO:0000250\|UniProtKB:Q71DI3

Chain	Residue	Details
A	LYS115
E	LYS115

site_id	SWS_FT_FI20
Number of Residues	2
Details	MOD_RES: N6-succinyllysine; alternate => ECO:0000250\|UniProtKB:Q71DI3

Chain	Residue	Details
A	LYS122
E	LYS122

site_id	SWS_FT_FI21
Number of Residues	2
Details	LIPID: S-palmitoyl cysteine => ECO:0000250\|UniProtKB:Q71DI3

Chain	Residue	Details
A	CYS110
E	CYS110

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)