9G25

snR30 snoRNP - State 1 - Utp23-Krr1-deltaC3

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000154	biological_process	rRNA modification
A	0000454	biological_process	snoRNA guided rRNA pseudouridine synthesis
A	0000495	biological_process	box H/ACA sno(s)RNA 3'-end processing
A	0000775	cellular_component	chromosome, centromeric region
A	0001522	biological_process	pseudouridine synthesis
A	0003677	molecular_function	DNA binding
A	0003723	molecular_function	RNA binding
A	0003729	molecular_function	mRNA binding
A	0005515	molecular_function	protein binding
A	0005730	cellular_component	nucleolus
A	0005856	cellular_component	cytoskeleton
A	0005874	cellular_component	microtubule
A	0006364	biological_process	rRNA processing
A	0006396	biological_process	RNA processing
A	0009451	biological_process	RNA modification
A	0009982	molecular_function	pseudouridine synthase activity
A	0016853	molecular_function	isomerase activity
A	0030686	cellular_component	90S preribosome
A	0031118	biological_process	rRNA pseudouridine synthesis
A	0031120	biological_process	snRNA pseudouridine synthesis
A	0031429	cellular_component	box H/ACA snoRNP complex
A	0042254	biological_process	ribosome biogenesis
A	0051301	biological_process	cell division
A	0106032	molecular_function	snRNA pseudouridine synthase activity
A	1990481	biological_process	mRNA pseudouridine synthesis
A	1990904	cellular_component	ribonucleoprotein complex
B	0000454	biological_process	snoRNA guided rRNA pseudouridine synthesis
B	0001522	biological_process	pseudouridine synthesis
B	0003723	molecular_function	RNA binding
B	0005515	molecular_function	protein binding
B	0005730	cellular_component	nucleolus
B	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
B	0006364	biological_process	rRNA processing
B	0030515	molecular_function	snoRNA binding
B	0031118	biological_process	rRNA pseudouridine synthesis
B	0031120	biological_process	snRNA pseudouridine synthesis
B	0031429	cellular_component	box H/ACA snoRNP complex
B	0042254	biological_process	ribosome biogenesis
B	0070034	molecular_function	telomerase RNA binding
B	1990904	cellular_component	ribonucleoprotein complex
C	0000454	biological_process	snoRNA guided rRNA pseudouridine synthesis
C	0001522	biological_process	pseudouridine synthesis
C	0003723	molecular_function	RNA binding
C	0005515	molecular_function	protein binding
C	0005730	cellular_component	nucleolus
C	0006364	biological_process	rRNA processing
C	0031120	biological_process	snRNA pseudouridine synthesis
C	0031429	cellular_component	box H/ACA snoRNP complex
C	0034513	molecular_function	box H/ACA snoRNA binding
C	0042254	biological_process	ribosome biogenesis
C	0042802	molecular_function	identical protein binding
C	1990904	cellular_component	ribonucleoprotein complex
D	0000454	biological_process	snoRNA guided rRNA pseudouridine synthesis
D	0000493	biological_process	box H/ACA snoRNP assembly
D	0003723	molecular_function	RNA binding
D	0005515	molecular_function	protein binding
D	0005730	cellular_component	nucleolus
D	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
D	0006364	biological_process	rRNA processing
D	0031118	biological_process	rRNA pseudouridine synthesis
D	0031120	biological_process	snRNA pseudouridine synthesis
D	0031429	cellular_component	box H/ACA snoRNP complex
D	0034513	molecular_function	box H/ACA snoRNA binding
D	0042254	biological_process	ribosome biogenesis
D	1990904	cellular_component	ribonucleoprotein complex
E	0000154	biological_process	rRNA modification
E	0000454	biological_process	snoRNA guided rRNA pseudouridine synthesis
E	0000495	biological_process	box H/ACA sno(s)RNA 3'-end processing
E	0000775	cellular_component	chromosome, centromeric region
E	0001522	biological_process	pseudouridine synthesis
E	0003677	molecular_function	DNA binding
E	0003723	molecular_function	RNA binding
E	0003729	molecular_function	mRNA binding
E	0005515	molecular_function	protein binding
E	0005730	cellular_component	nucleolus
E	0005856	cellular_component	cytoskeleton
E	0005874	cellular_component	microtubule
E	0006364	biological_process	rRNA processing
E	0006396	biological_process	RNA processing
E	0009451	biological_process	RNA modification
E	0009982	molecular_function	pseudouridine synthase activity
E	0016853	molecular_function	isomerase activity
E	0030686	cellular_component	90S preribosome
E	0031118	biological_process	rRNA pseudouridine synthesis
E	0031120	biological_process	snRNA pseudouridine synthesis
E	0031429	cellular_component	box H/ACA snoRNP complex
E	0042254	biological_process	ribosome biogenesis
E	0051301	biological_process	cell division
E	0106032	molecular_function	snRNA pseudouridine synthase activity
E	1990481	biological_process	mRNA pseudouridine synthesis
E	1990904	cellular_component	ribonucleoprotein complex
F	0000454	biological_process	snoRNA guided rRNA pseudouridine synthesis
F	0001522	biological_process	pseudouridine synthesis
F	0003723	molecular_function	RNA binding
F	0005515	molecular_function	protein binding
F	0005730	cellular_component	nucleolus
F	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
F	0006364	biological_process	rRNA processing
F	0030515	molecular_function	snoRNA binding
F	0031118	biological_process	rRNA pseudouridine synthesis
F	0031120	biological_process	snRNA pseudouridine synthesis
F	0031429	cellular_component	box H/ACA snoRNP complex
F	0042254	biological_process	ribosome biogenesis
F	0070034	molecular_function	telomerase RNA binding
F	1990904	cellular_component	ribonucleoprotein complex
G	0000454	biological_process	snoRNA guided rRNA pseudouridine synthesis
G	0000493	biological_process	box H/ACA snoRNP assembly
G	0003723	molecular_function	RNA binding
G	0005515	molecular_function	protein binding
G	0005730	cellular_component	nucleolus
G	0005732	cellular_component	sno(s)RNA-containing ribonucleoprotein complex
G	0006364	biological_process	rRNA processing
G	0031118	biological_process	rRNA pseudouridine synthesis
G	0031120	biological_process	snRNA pseudouridine synthesis
G	0031429	cellular_component	box H/ACA snoRNP complex
G	0034513	molecular_function	box H/ACA snoRNA binding
G	0042254	biological_process	ribosome biogenesis
G	1990904	cellular_component	ribonucleoprotein complex
H	0000447	biological_process	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
H	0003674	molecular_function	molecular_function
H	0003676	molecular_function	nucleic acid binding
H	0003723	molecular_function	RNA binding
H	0005515	molecular_function	protein binding
H	0005654	cellular_component	nucleoplasm
H	0005730	cellular_component	nucleolus
H	0006364	biological_process	rRNA processing
H	0030490	biological_process	maturation of SSU-rRNA
H	0030686	cellular_component	90S preribosome
H	0030688	cellular_component	preribosome, small subunit precursor
H	0032040	cellular_component	small-subunit processome
H	0042254	biological_process	ribosome biogenesis
H	0042274	biological_process	ribosomal small subunit biogenesis
H	1990904	cellular_component	ribonucleoprotein complex
I	0000447	biological_process	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
I	0003674	molecular_function	molecular_function
I	0005515	molecular_function	protein binding
I	0005730	cellular_component	nucleolus
I	0006364	biological_process	rRNA processing
I	0030686	cellular_component	90S preribosome
I	0042254	biological_process	ribosome biogenesis
J	0000462	biological_process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
J	0002181	biological_process	cytoplasmic translation
J	0003735	molecular_function	structural constituent of ribosome
J	0005730	cellular_component	nucleolus
J	0005737	cellular_component	cytoplasm
J	0005829	cellular_component	cytosol
J	0005840	cellular_component	ribosome
J	0006412	biological_process	translation
J	0022627	cellular_component	cytosolic small ribosomal subunit
J	0030686	cellular_component	90S preribosome
J	0070181	molecular_function	small ribosomal subunit rRNA binding
J	1990904	cellular_component	ribonucleoprotein complex
K	0000447	biological_process	endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
K	0000462	biological_process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
K	0000472	biological_process	endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
K	0000480	biological_process	endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
K	0003723	molecular_function	RNA binding
K	0005654	cellular_component	nucleoplasm
K	0005730	cellular_component	nucleolus
K	0005739	cellular_component	mitochondrion
K	0006364	biological_process	rRNA processing
K	0008270	molecular_function	zinc ion binding
K	0032040	cellular_component	small-subunit processome
K	0042254	biological_process	ribosome biogenesis
K	0070181	molecular_function	small ribosomal subunit rRNA binding
L	0000028	biological_process	ribosomal small subunit assembly
L	0000462	biological_process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
L	0002181	biological_process	cytoplasmic translation
L	0003729	molecular_function	mRNA binding
L	0003735	molecular_function	structural constituent of ribosome
L	0005654	cellular_component	nucleoplasm
L	0005730	cellular_component	nucleolus
L	0005737	cellular_component	cytoplasm
L	0005829	cellular_component	cytosol
L	0005840	cellular_component	ribosome
L	0006364	biological_process	rRNA processing
L	0006412	biological_process	translation
L	0022627	cellular_component	cytosolic small ribosomal subunit
L	0030686	cellular_component	90S preribosome
L	0032040	cellular_component	small-subunit processome
L	0042254	biological_process	ribosome biogenesis
L	1990904	cellular_component	ribonucleoprotein complex

Functional Information from PROSITE/UniProt

site_id	PS00054
Number of Residues	23
Details	RIBOSOMAL_S11 Ribosomal protein S11 signature. LrALarS.GLrIgrieDvTPvPSD

Chain	Residue	Details
L	LEU102-ASP124

---

site_id	PS00362
Number of Residues	31
Details	RIBOSOMAL_S15 Ribosomal protein S15 signature. VrkHLernRkDkdAkfrLilIesrihrLarY

Chain	Residue	Details
J	VAL98-TYR128

---

site_id	PS01082
Number of Residues	18
Details	RIBOSOMAL_L7AE Ribosomal protein L7Ae signature. CedhsVPYifIpSKqdLG

Chain	Residue	Details
D	CYS94-GLY111

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	150
Details	Domain: {"description":"PUA","evidences":[{"source":"PROSITE-ProRule","id":"PRU00161","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	2
Details	Active site: {"description":"Nucleophile","evidences":[{"source":"UniProtKB","id":"P60340","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	2
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"19779198","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	14
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"22106047","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	11
Details	Compositional bias: {"description":"Basic and acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	1
Details	Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"17287358","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"17330950","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"19779198","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI7
Number of Residues	2
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"17287358","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI8
Number of Residues	70
Details	Domain: {"description":"KH"}

Chain

Residue

Details

---

site_id	SWS_FT_FI9
Number of Residues	22
Details	Region: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI10
Number of Residues	1
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"15665377","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"17330950","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"19779198","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI11
Number of Residues	1
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---