9FY3
Structure of CliM-stalled Bacillus subtilis 70S ribosome with tRNA-Tyr in the A-site
This is a non-PDB format compatible entry.
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| 0 | 0003735 | molecular_function | structural constituent of ribosome |
| 0 | 0006412 | biological_process | translation |
| 1 | 0005737 | cellular_component | cytoplasm |
| 1 | 0006412 | biological_process | translation |
| 2 | 0006412 | biological_process | translation |
| 3 | 0003735 | molecular_function | structural constituent of ribosome |
| 3 | 0006412 | biological_process | translation |
| 3 | 0022625 | cellular_component | cytosolic large ribosomal subunit |
| 4 | 0005737 | cellular_component | cytoplasm |
| 4 | 0006412 | biological_process | translation |
| 4 | 0022625 | cellular_component | cytosolic large ribosomal subunit |
| 6 | 0003735 | molecular_function | structural constituent of ribosome |
| 6 | 0006412 | biological_process | translation |
| b | 0003735 | molecular_function | structural constituent of ribosome |
| b | 0005515 | molecular_function | protein binding |
| b | 0006412 | biological_process | translation |
| b | 0022627 | cellular_component | cytosolic small ribosomal subunit |
| c | 0003729 | molecular_function | mRNA binding |
| c | 0006412 | biological_process | translation |
| c | 0019843 | molecular_function | rRNA binding |
| c | 0022627 | cellular_component | cytosolic small ribosomal subunit |
| C | 0002181 | biological_process | cytoplasmic translation |
| C | 0003735 | molecular_function | structural constituent of ribosome |
| C | 0006412 | biological_process | translation |
| C | 0015934 | cellular_component | large ribosomal subunit |
| C | 0019843 | molecular_function | rRNA binding |
| C | 0022625 | cellular_component | cytosolic large ribosomal subunit |
| d | 0006412 | biological_process | translation |
| d | 0015935 | cellular_component | small ribosomal subunit |
| d | 0019843 | molecular_function | rRNA binding |
| d | 0042274 | biological_process | ribosomal small subunit biogenesis |
| D | 0003735 | molecular_function | structural constituent of ribosome |
| D | 0006412 | biological_process | translation |
| D | 0019843 | molecular_function | rRNA binding |
| D | 0022625 | cellular_component | cytosolic large ribosomal subunit |
| D | 2000234 | biological_process | positive regulation of rRNA processing |
| e | 0005737 | cellular_component | cytoplasm |
| e | 0006412 | biological_process | translation |
| e | 0019843 | molecular_function | rRNA binding |
| e | 0022627 | cellular_component | cytosolic small ribosomal subunit |
| e | 0042254 | biological_process | ribosome biogenesis |
| E | 0003735 | molecular_function | structural constituent of ribosome |
| E | 0006412 | biological_process | translation |
| E | 0006417 | biological_process | regulation of translation |
| E | 0019843 | molecular_function | rRNA binding |
| E | 0022625 | cellular_component | cytosolic large ribosomal subunit |
| f | 0003735 | molecular_function | structural constituent of ribosome |
| f | 0005737 | cellular_component | cytoplasm |
| f | 0006412 | biological_process | translation |
| f | 0019843 | molecular_function | rRNA binding |
| f | 0070181 | molecular_function | small ribosomal subunit rRNA binding |
| F | 0000049 | molecular_function | tRNA binding |
| F | 0006412 | biological_process | translation |
| F | 0019843 | molecular_function | rRNA binding |
| F | 0022625 | cellular_component | cytosolic large ribosomal subunit |
| g | 0000049 | molecular_function | tRNA binding |
| g | 0005840 | cellular_component | ribosome |
| g | 0006412 | biological_process | translation |
| g | 0019843 | molecular_function | rRNA binding |
| g | 0022627 | cellular_component | cytosolic small ribosomal subunit |
| G | 0002181 | biological_process | cytoplasmic translation |
| G | 0003723 | molecular_function | RNA binding |
| G | 0003735 | molecular_function | structural constituent of ribosome |
| G | 0005515 | molecular_function | protein binding |
| G | 0006412 | biological_process | translation |
| G | 0019843 | molecular_function | rRNA binding |
| G | 0022625 | cellular_component | cytosolic large ribosomal subunit |
| h | 0005737 | cellular_component | cytoplasm |
| h | 0006412 | biological_process | translation |
| h | 0019843 | molecular_function | rRNA binding |
| h | 0022627 | cellular_component | cytosolic small ribosomal subunit |
| i | 0005737 | cellular_component | cytoplasm |
| i | 0006412 | biological_process | translation |
| i | 0015935 | cellular_component | small ribosomal subunit |
| i | 0022627 | cellular_component | cytosolic small ribosomal subunit |
| j | 0000049 | molecular_function | tRNA binding |
| j | 0005737 | cellular_component | cytoplasm |
| j | 0006412 | biological_process | translation |
| j | 0015935 | cellular_component | small ribosomal subunit |
| J | 0003729 | molecular_function | mRNA binding |
| J | 0005840 | cellular_component | ribosome |
| J | 0006412 | biological_process | translation |
| J | 0017148 | biological_process | negative regulation of translation |
| J | 0022625 | cellular_component | cytosolic large ribosomal subunit |
| k | 0005515 | molecular_function | protein binding |
| k | 0006412 | biological_process | translation |
| k | 0019843 | molecular_function | rRNA binding |
| k | 0022627 | cellular_component | cytosolic small ribosomal subunit |
| K | 0006412 | biological_process | translation |
| K | 0019843 | molecular_function | rRNA binding |
| K | 0022625 | cellular_component | cytosolic large ribosomal subunit |
| K | 0070180 | molecular_function | large ribosomal subunit rRNA binding |
| l | 0000049 | molecular_function | tRNA binding |
| l | 0005515 | molecular_function | protein binding |
| l | 0005840 | cellular_component | ribosome |
| l | 0006412 | biological_process | translation |
| l | 0019843 | molecular_function | rRNA binding |
| L | 0003735 | molecular_function | structural constituent of ribosome |
| L | 0006412 | biological_process | translation |
| L | 0019843 | molecular_function | rRNA binding |
| L | 0022625 | cellular_component | cytosolic large ribosomal subunit |
| m | 0000049 | molecular_function | tRNA binding |
| m | 0005829 | cellular_component | cytosol |
| m | 0006412 | biological_process | translation |
| m | 0015935 | cellular_component | small ribosomal subunit |
| m | 0019843 | molecular_function | rRNA binding |
| M | 0003735 | molecular_function | structural constituent of ribosome |
| M | 0006412 | biological_process | translation |
| M | 0019843 | molecular_function | rRNA binding |
| M | 0022625 | cellular_component | cytosolic large ribosomal subunit |
| n | 0003735 | molecular_function | structural constituent of ribosome |
| n | 0006412 | biological_process | translation |
| n | 0008270 | molecular_function | zinc ion binding |
| n | 0015935 | cellular_component | small ribosomal subunit |
| n | 0019843 | molecular_function | rRNA binding |
| N | 0003735 | molecular_function | structural constituent of ribosome |
| N | 0006412 | biological_process | translation |
| N | 0022625 | cellular_component | cytosolic large ribosomal subunit |
| o | 0005737 | cellular_component | cytoplasm |
| o | 0006412 | biological_process | translation |
| o | 0019843 | molecular_function | rRNA binding |
| o | 0022627 | cellular_component | cytosolic small ribosomal subunit |
| O | 0005737 | cellular_component | cytoplasm |
| O | 0006412 | biological_process | translation |
| O | 0008097 | molecular_function | 5S rRNA binding |
| O | 0019843 | molecular_function | rRNA binding |
| O | 0022625 | cellular_component | cytosolic large ribosomal subunit |
| p | 0003735 | molecular_function | structural constituent of ribosome |
| p | 0005737 | cellular_component | cytoplasm |
| p | 0006412 | biological_process | translation |
| p | 0015935 | cellular_component | small ribosomal subunit |
| P | 0003735 | molecular_function | structural constituent of ribosome |
| P | 0006412 | biological_process | translation |
| P | 0022625 | cellular_component | cytosolic large ribosomal subunit |
| q | 0006412 | biological_process | translation |
| q | 0019843 | molecular_function | rRNA binding |
| q | 0022627 | cellular_component | cytosolic small ribosomal subunit |
| Q | 0000027 | biological_process | ribosomal large subunit assembly |
| Q | 0003735 | molecular_function | structural constituent of ribosome |
| Q | 0019843 | molecular_function | rRNA binding |
| Q | 0022625 | cellular_component | cytosolic large ribosomal subunit |
| r | 0003735 | molecular_function | structural constituent of ribosome |
| r | 0006412 | biological_process | translation |
| r | 0019843 | molecular_function | rRNA binding |
| r | 0022627 | cellular_component | cytosolic small ribosomal subunit |
| r | 0070181 | molecular_function | small ribosomal subunit rRNA binding |
| R | 0003735 | molecular_function | structural constituent of ribosome |
| R | 0005737 | cellular_component | cytoplasm |
| R | 0006412 | biological_process | translation |
| R | 0019843 | molecular_function | rRNA binding |
| s | 0005737 | cellular_component | cytoplasm |
| s | 0006412 | biological_process | translation |
| s | 0019843 | molecular_function | rRNA binding |
| s | 0022627 | cellular_component | cytosolic small ribosomal subunit |
| S | 0003735 | molecular_function | structural constituent of ribosome |
| S | 0006412 | biological_process | translation |
| S | 0019843 | molecular_function | rRNA binding |
| S | 0022625 | cellular_component | cytosolic large ribosomal subunit |
| t | 0005829 | cellular_component | cytosol |
| t | 0006412 | biological_process | translation |
| t | 0015935 | cellular_component | small ribosomal subunit |
| t | 0019843 | molecular_function | rRNA binding |
| t | 0070181 | molecular_function | small ribosomal subunit rRNA binding |
| T | 0006412 | biological_process | translation |
| T | 0019843 | molecular_function | rRNA binding |
| T | 0022625 | cellular_component | cytosolic large ribosomal subunit |
| U | 0003735 | molecular_function | structural constituent of ribosome |
| U | 0005737 | cellular_component | cytoplasm |
| U | 0006412 | biological_process | translation |
| U | 0009295 | cellular_component | nucleoid |
| U | 0019843 | molecular_function | rRNA binding |
| U | 0022625 | cellular_component | cytosolic large ribosomal subunit |
| W | 0003735 | molecular_function | structural constituent of ribosome |
| W | 0006412 | biological_process | translation |
| W | 0022625 | cellular_component | cytosolic large ribosomal subunit |
| X | 0006412 | biological_process | translation |
| Y | 0003735 | molecular_function | structural constituent of ribosome |
| Y | 0006412 | biological_process | translation |
| Y | 0022625 | cellular_component | cytosolic large ribosomal subunit |
| Z | 0006412 | biological_process | translation |
| Z | 0022625 | cellular_component | cytosolic large ribosomal subunit |
Functional Information from PROSITE/UniProt
| site_id | PS00049 |
| Number of Residues | 27 |
| Details | RIBOSOMAL_L14 Ribosomal protein L14 signature. AVIVrtksgarrs.DGsyisFdeNacVI |
| Chain | Residue | Details |
| K | ALA60-ILE86 |
| site_id | PS00050 |
| Number of Residues | 16 |
| Details | RIBOSOMAL_L23 Ribosomal protein L23 signature. RKAIVKLTadskeieI |
| Chain | Residue | Details |
| T | ARG77-ILE92 |
| site_id | PS00052 |
| Number of Residues | 27 |
| Details | RIBOSOMAL_S7 Ribosomal protein S7 signature. SkLvsrLInkmmidGKKgksqtILykS |
| Chain | Residue | Details |
| g | SER20-SER46 |
| site_id | PS00053 |
| Number of Residues | 18 |
| Details | RIBOSOMAL_S8 Ribosomal protein S8 signature. GiaIISTSqGVLtdkeAR |
| Chain | Residue | Details |
| h | GLY102-ARG119 |
| site_id | PS00054 |
| Number of Residues | 23 |
| Details | RIBOSOMAL_S11 Ribosomal protein S11 signature. IrALqaA.GLeVtairDvTPvPHN |
| Chain | Residue | Details |
| k | ILE99-ASN121 |
| site_id | PS00055 |
| Number of Residues | 8 |
| Details | RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR |
| Chain | Residue | Details |
| l | LYS56-ARG63 |
| site_id | PS00056 |
| Number of Residues | 13 |
| Details | RIBOSOMAL_S17 Ribosomal protein S17 signature. GDiVkImEtRPLS |
| Chain | Residue | Details |
| q | GLY58-SER70 |
| site_id | PS00057 |
| Number of Residues | 24 |
| Details | RIBOSOMAL_S18 Ribosomal protein S18 signature. IDYkd.VdlLkkFVSEr.GKIlprRV |
| Chain | Residue | Details |
| r | ILE26-VAL49 |
| site_id | PS00323 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_S19 Ribosomal protein S19 signature. DGRkhvpvfIsedmVGhkLGEFapT |
| Chain | Residue | Details |
| s | ASP53-THR77 |
| site_id | PS00358 |
| Number of Residues | 17 |
| Details | RIBOSOMAL_L5 Ribosomal protein L5 signature. LtfIAGQkpVvTrAKkS |
| Chain | Residue | Details |
| F | LEU57-SER73 |
| site_id | PS00360 |
| Number of Residues | 19 |
| Details | RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGfsGQagAirhGiARAL |
| Chain | Residue | Details |
| i | GLY69-LEU87 |
| site_id | PS00361 |
| Number of Residues | 16 |
| Details | RIBOSOMAL_S10 Ribosomal protein S10 signature. AkrsGAsvsGPIpLPT |
| Chain | Residue | Details |
| j | ALA29-THR44 |
| site_id | PS00362 |
| Number of Residues | 31 |
| Details | RIBOSOMAL_S15 Ribosomal protein S15 signature. LneHLrthKkDhhSrrgLlkMvgkrrnLltY |
| Chain | Residue | Details |
| o | LEU39-TYR69 |
| site_id | PS00464 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_L22 Ribosomal protein L22 signature. KrfRpRAmGRasqinkrtSHITIvV |
| Chain | Residue | Details |
| S | LYS83-VAL107 |
| site_id | PS00467 |
| Number of Residues | 12 |
| Details | RIBOSOMAL_L2 Ribosomal protein L2 signature. PtvRGSVmNPnD |
| Chain | Residue | Details |
| C | PRO218-ASP229 |
| site_id | PS00474 |
| Number of Residues | 24 |
| Details | RIBOSOMAL_L3 Ribosomal protein L3 signature. FsageivDvtGvSkGKGfqGaikR |
| Chain | Residue | Details |
| D | PHE102-ARG125 |
| site_id | PS00475 |
| Number of Residues | 31 |
| Details | RIBOSOMAL_L15 Ribosomal protein L15 signature. KILGnGkLekk..LtVkankFSasAkeaVeaaG |
| Chain | Residue | Details |
| L | LYS110-GLY140 |
| site_id | PS00525 |
| Number of Residues | 9 |
| Details | RIBOSOMAL_L6_1 Ribosomal protein L6 signature 1. PEpYKGKGI |
| Chain | Residue | Details |
| G | PRO155-ILE163 |
| site_id | PS00527 |
| Number of Residues | 23 |
| Details | RIBOSOMAL_S14 Ribosomal protein S14 signature. R.CercgrphsvirkFKLCRiCFR |
| Chain | Residue | Details |
| n | ARG23-ARG45 |
| site_id | PS00548 |
| Number of Residues | 35 |
| Details | RIBOSOMAL_S3 Ribosomal protein S3 signature. ARseyyseGtVplHt..LradIDyatseadTtyGklG |
| Chain | Residue | Details |
| c | ALA162-GLY196 |
| site_id | PS00579 |
| Number of Residues | 15 |
| Details | RIBOSOMAL_L29 Ribosomal protein L29 signature. NTARIReVRKAIARM |
| Chain | Residue | Details |
| Y | ASN39-MET53 |
| site_id | PS00582 |
| Number of Residues | 20 |
| Details | RIBOSOMAL_L33 Ribosomal protein L33 signature. YiSkKNkrnnPdrVEfkKYC |
| Chain | Residue | Details |
| 1 | TYR17-CYS36 |
| site_id | PS00585 |
| Number of Residues | 33 |
| Details | RIBOSOMAL_S5 Ribosomal protein S5 signature. GRrfrFaAlvVVGDkn.GhVGfGtgkaq.EVpe.AI |
| Chain | Residue | Details |
| e | GLY28-ILE60 |
| site_id | PS00586 |
| Number of Residues | 12 |
| Details | RIBOSOMAL_L16_1 Ribosomal protein L16 signature 1. KRgGKVWIKIFP |
| Chain | Residue | Details |
| M | LYS59-PRO70 |
| site_id | PS00632 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_S4 Ribosomal protein S4 signature. LDsRLdnvVYKlglArTrrqARqLV |
| Chain | Residue | Details |
| d | LEU90-VAL114 |
| site_id | PS00634 |
| Number of Residues | 33 |
| Details | RIBOSOMAL_L30 Ribosomal protein L30 signature. TVrtLgLkKtnQtVvhednaairgMInkVshLV |
| Chain | Residue | Details |
| Z | THR22-VAL54 |
| site_id | PS00646 |
| Number of Residues | 14 |
| Details | RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGiRHrrGlpVRGQ |
| Chain | Residue | Details |
| m | ARG87-GLN100 |
| site_id | PS00701 |
| Number of Residues | 12 |
| Details | RIBOSOMAL_L16_2 Ribosomal protein L16 signature 2. RMGsGKGapegW |
| Chain | Residue | Details |
| M | ARG82-TRP93 |
| site_id | PS00732 |
| Number of Residues | 10 |
| Details | RIBOSOMAL_S16 Ribosomal protein S16 signature. VkIRLKRMGA |
| Chain | Residue | Details |
| p | VAL3-ALA12 |
| site_id | PS00783 |
| Number of Residues | 23 |
| Details | RIBOSOMAL_L13 Ribosomal protein L13 signature. IKGMLPkgsl.GRqmfkkLnVYrG |
| Chain | Residue | Details |
| J | ILE106-GLY128 |
| site_id | PS00784 |
| Number of Residues | 20 |
| Details | RIBOSOMAL_L34 Ribosomal protein L34 signature. KRTFQpnnrkRskvh.GFrsR |
| Chain | Residue | Details |
| 2 | LYS2-ARG21 |
| site_id | PS00828 |
| Number of Residues | 26 |
| Details | RIBOSOMAL_L36 Ribosomal protein L36 signature. CekCkvIrRkgkVmViCenp.KHkQkQ |
| Chain | Residue | Details |
| 4 | CYS11-GLN36 |
| site_id | PS00831 |
| Number of Residues | 15 |
| Details | RIBOSOMAL_L27 Ribosomal protein L27 signature. GsILyRQRGtkiypG |
| Chain | Residue | Details |
| W | GLY42-GLY56 |
| site_id | PS00936 |
| Number of Residues | 27 |
| Details | RIBOSOMAL_L35 Ribosomal protein L35 signature. KTHrGSaKRFkktgsgklkrshayt.SH |
| Chain | Residue | Details |
| 3 | LYS5-HIS31 |
| site_id | PS00937 |
| Number of Residues | 17 |
| Details | RIBOSOMAL_L20 Ribosomal protein L20 signature. KrdfRkLWITRINaaaR |
| Chain | Residue | Details |
| Q | LYS54-ARG70 |
| site_id | PS00962 |
| Number of Residues | 12 |
| Details | RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. MkQLLEAGVHFG |
| Chain | Residue | Details |
| b | MET6-GLY17 |
| site_id | PS00963 |
| Number of Residues | 25 |
| Details | RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PdaLFIiDprkEriaVaEarklNIP |
| Chain | Residue | Details |
| b | PRO158-PRO182 |
| site_id | PS01015 |
| Number of Residues | 16 |
| Details | RIBOSOMAL_L19 Ribosomal protein L19 signature. VvRyGKVR.RAKLYYLR |
| Chain | Residue | Details |
| P | VAL86-ARG101 |
| site_id | PS01048 |
| Number of Residues | 10 |
| Details | RIBOSOMAL_S6 Ribosomal protein S6 signature. GkRRLAYeIN |
| Chain | Residue | Details |
| f | GLY44-ASN53 |
| site_id | PS01108 |
| Number of Residues | 18 |
| Details | RIBOSOMAL_L24 Ribosomal protein L24 signature. GDkVmVIsGkdKGkq.GtI |
| Chain | Residue | Details |
| U | GLY6-ILE23 |
| site_id | PS01143 |
| Number of Residues | 22 |
| Details | RIBOSOMAL_L31 Ribosomal protein L31 signature. EIcsecHPFYTgrqkfasad....GR |
| Chain | Residue | Details |
| 6 | GLU34-ARG55 |
| site_id | PS01167 |
| Number of Residues | 23 |
| Details | RIBOSOMAL_L17 Ribosomal protein L17 signature. IeTTetRaKelrsvvEkMITlGK |
| Chain | Residue | Details |
| N | ILE30-LYS52 |
| site_id | PS01169 |
| Number of Residues | 23 |
| Details | RIBOSOMAL_L21 Ribosomal protein L21 signature. ItvfRykpKKnvhkkqGHRQpyT |
| Chain | Residue | Details |
| R | ILE71-THR93 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 220 |
| Details | Region: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 36 |
| Details | Compositional bias: {"description":"Basic and acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 29 |
| Details | Compositional bias: {"description":"Basic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 2 |
| Details | Binding site: {"evidences":[{"evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 2 |
| Details | Binding site: {} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 20 |
| Details | Compositional bias: {"description":"Gly residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 68 |
| Details | Domain: {"description":"KH type-2","evidences":[{"source":"HAMAP-Rule","id":"MF_01309","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI8 |
| Number of Residues | 63 |
| Details | Domain: {"description":"S5 DRBM"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI9 |
| Number of Residues | 1 |
| Details | Site: {"description":"Not modified","evidences":[{"source":"PubMed","id":"19653700","evidenceCode":"ECO:0000269"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"unpublished observations","publicationDate":"AUG-2002","authors":["Ochi K.","Takashi I.","Forbes A.","Kelleher N.L.","Garavelli J.S."]}}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI10 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01364","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI11 |
| Number of Residues | 63 |
| Details | Domain: {"description":"S4 RNA-binding"} |
| Chain | Residue | Details |
