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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9FY3

Structure of CliM-stalled Bacillus subtilis 70S ribosome with tRNA-Tyr in the A-site

This is a non-PDB format compatible entry.
Functional Information from PROSITE/UniProt
site_idPS00049
Number of Residues27
DetailsRIBOSOMAL_L14 Ribosomal protein L14 signature. AVIVrtksgarrs.DGsyisFdeNacVI
ChainResidueDetails
KALA60-ILE86
site_idPS00050
Number of Residues16
DetailsRIBOSOMAL_L23 Ribosomal protein L23 signature. RKAIVKLTadskeieI
ChainResidueDetails
TARG77-ILE92
site_idPS00052
Number of Residues27
DetailsRIBOSOMAL_S7 Ribosomal protein S7 signature. SkLvsrLInkmmidGKKgksqtILykS
ChainResidueDetails
gSER20-SER46
site_idPS00053
Number of Residues18
DetailsRIBOSOMAL_S8 Ribosomal protein S8 signature. GiaIISTSqGVLtdkeAR
ChainResidueDetails
hGLY102-ARG119
site_idPS00054
Number of Residues23
DetailsRIBOSOMAL_S11 Ribosomal protein S11 signature. IrALqaA.GLeVtairDvTPvPHN
ChainResidueDetails
kILE99-ASN121
site_idPS00055
Number of Residues8
DetailsRIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR
ChainResidueDetails
lLYS56-ARG63
site_idPS00056
Number of Residues13
DetailsRIBOSOMAL_S17 Ribosomal protein S17 signature. GDiVkImEtRPLS
ChainResidueDetails
qGLY58-SER70
site_idPS00057
Number of Residues24
DetailsRIBOSOMAL_S18 Ribosomal protein S18 signature. IDYkd.VdlLkkFVSEr.GKIlprRV
ChainResidueDetails
rILE26-VAL49
site_idPS00323
Number of Residues25
DetailsRIBOSOMAL_S19 Ribosomal protein S19 signature. DGRkhvpvfIsedmVGhkLGEFapT
ChainResidueDetails
sASP53-THR77
site_idPS00358
Number of Residues17
DetailsRIBOSOMAL_L5 Ribosomal protein L5 signature. LtfIAGQkpVvTrAKkS
ChainResidueDetails
FLEU57-SER73
site_idPS00360
Number of Residues19
DetailsRIBOSOMAL_S9 Ribosomal protein S9 signature. GGGfsGQagAirhGiARAL
ChainResidueDetails
iGLY69-LEU87
site_idPS00361
Number of Residues16
DetailsRIBOSOMAL_S10 Ribosomal protein S10 signature. AkrsGAsvsGPIpLPT
ChainResidueDetails
jALA29-THR44
site_idPS00362
Number of Residues31
DetailsRIBOSOMAL_S15 Ribosomal protein S15 signature. LneHLrthKkDhhSrrgLlkMvgkrrnLltY
ChainResidueDetails
oLEU39-TYR69
site_idPS00464
Number of Residues25
DetailsRIBOSOMAL_L22 Ribosomal protein L22 signature. KrfRpRAmGRasqinkrtSHITIvV
ChainResidueDetails
SLYS83-VAL107
site_idPS00467
Number of Residues12
DetailsRIBOSOMAL_L2 Ribosomal protein L2 signature. PtvRGSVmNPnD
ChainResidueDetails
CPRO218-ASP229
site_idPS00474
Number of Residues24
DetailsRIBOSOMAL_L3 Ribosomal protein L3 signature. FsageivDvtGvSkGKGfqGaikR
ChainResidueDetails
DPHE102-ARG125
site_idPS00475
Number of Residues31
DetailsRIBOSOMAL_L15 Ribosomal protein L15 signature. KILGnGkLekk..LtVkankFSasAkeaVeaaG
ChainResidueDetails
LLYS110-GLY140
site_idPS00525
Number of Residues9
DetailsRIBOSOMAL_L6_1 Ribosomal protein L6 signature 1. PEpYKGKGI
ChainResidueDetails
GPRO155-ILE163
site_idPS00527
Number of Residues23
DetailsRIBOSOMAL_S14 Ribosomal protein S14 signature. R.CercgrphsvirkFKLCRiCFR
ChainResidueDetails
nARG23-ARG45
site_idPS00548
Number of Residues35
DetailsRIBOSOMAL_S3 Ribosomal protein S3 signature. ARseyyseGtVplHt..LradIDyatseadTtyGklG
ChainResidueDetails
cALA162-GLY196
site_idPS00579
Number of Residues15
DetailsRIBOSOMAL_L29 Ribosomal protein L29 signature. NTARIReVRKAIARM
ChainResidueDetails
YASN39-MET53
site_idPS00582
Number of Residues20
DetailsRIBOSOMAL_L33 Ribosomal protein L33 signature. YiSkKNkrnnPdrVEfkKYC
ChainResidueDetails
1TYR17-CYS36
site_idPS00585
Number of Residues33
DetailsRIBOSOMAL_S5 Ribosomal protein S5 signature. GRrfrFaAlvVVGDkn.GhVGfGtgkaq.EVpe.AI
ChainResidueDetails
eGLY28-ILE60
site_idPS00586
Number of Residues12
DetailsRIBOSOMAL_L16_1 Ribosomal protein L16 signature 1. KRgGKVWIKIFP
ChainResidueDetails
MLYS59-PRO70
site_idPS00632
Number of Residues25
DetailsRIBOSOMAL_S4 Ribosomal protein S4 signature. LDsRLdnvVYKlglArTrrqARqLV
ChainResidueDetails
dLEU90-VAL114
site_idPS00634
Number of Residues33
DetailsRIBOSOMAL_L30 Ribosomal protein L30 signature. TVrtLgLkKtnQtVvhednaairgMInkVshLV
ChainResidueDetails
ZTHR22-VAL54
site_idPS00646
Number of Residues14
DetailsRIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGiRHrrGlpVRGQ
ChainResidueDetails
mARG87-GLN100
site_idPS00701
Number of Residues12
DetailsRIBOSOMAL_L16_2 Ribosomal protein L16 signature 2. RMGsGKGapegW
ChainResidueDetails
MARG82-TRP93
site_idPS00732
Number of Residues10
DetailsRIBOSOMAL_S16 Ribosomal protein S16 signature. VkIRLKRMGA
ChainResidueDetails
pVAL3-ALA12
site_idPS00783
Number of Residues23
DetailsRIBOSOMAL_L13 Ribosomal protein L13 signature. IKGMLPkgsl.GRqmfkkLnVYrG
ChainResidueDetails
JILE106-GLY128
site_idPS00784
Number of Residues20
DetailsRIBOSOMAL_L34 Ribosomal protein L34 signature. KRTFQpnnrkRskvh.GFrsR
ChainResidueDetails
2LYS2-ARG21
site_idPS00828
Number of Residues26
DetailsRIBOSOMAL_L36 Ribosomal protein L36 signature. CekCkvIrRkgkVmViCenp.KHkQkQ
ChainResidueDetails
4CYS11-GLN36
site_idPS00831
Number of Residues15
DetailsRIBOSOMAL_L27 Ribosomal protein L27 signature. GsILyRQRGtkiypG
ChainResidueDetails
WGLY42-GLY56
site_idPS00936
Number of Residues27
DetailsRIBOSOMAL_L35 Ribosomal protein L35 signature. KTHrGSaKRFkktgsgklkrshayt.SH
ChainResidueDetails
3LYS5-HIS31
site_idPS00937
Number of Residues17
DetailsRIBOSOMAL_L20 Ribosomal protein L20 signature. KrdfRkLWITRINaaaR
ChainResidueDetails
QLYS54-ARG70
site_idPS00962
Number of Residues12
DetailsRIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. MkQLLEAGVHFG
ChainResidueDetails
bMET6-GLY17
site_idPS00963
Number of Residues25
DetailsRIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PdaLFIiDprkEriaVaEarklNIP
ChainResidueDetails
bPRO158-PRO182
site_idPS01015
Number of Residues16
DetailsRIBOSOMAL_L19 Ribosomal protein L19 signature. VvRyGKVR.RAKLYYLR
ChainResidueDetails
PVAL86-ARG101
site_idPS01048
Number of Residues10
DetailsRIBOSOMAL_S6 Ribosomal protein S6 signature. GkRRLAYeIN
ChainResidueDetails
fGLY44-ASN53
site_idPS01108
Number of Residues18
DetailsRIBOSOMAL_L24 Ribosomal protein L24 signature. GDkVmVIsGkdKGkq.GtI
ChainResidueDetails
UGLY6-ILE23
site_idPS01143
Number of Residues22
DetailsRIBOSOMAL_L31 Ribosomal protein L31 signature. EIcsecHPFYTgrqkfasad....GR
ChainResidueDetails
6GLU34-ARG55
site_idPS01167
Number of Residues23
DetailsRIBOSOMAL_L17 Ribosomal protein L17 signature. IeTTetRaKelrsvvEkMITlGK
ChainResidueDetails
NILE30-LYS52
site_idPS01169
Number of Residues23
DetailsRIBOSOMAL_L21 Ribosomal protein L21 signature. ItvfRykpKKnvhkkqGHRQpyT
ChainResidueDetails
RILE71-THR93
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues220
DetailsRegion: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails
site_idSWS_FT_FI2
Number of Residues36
DetailsCompositional bias: {"description":"Basic and acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails
site_idSWS_FT_FI3
Number of Residues29
DetailsCompositional bias: {"description":"Basic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails
site_idSWS_FT_FI4
Number of Residues2
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails
site_idSWS_FT_FI5
Number of Residues2
DetailsBinding site: {}
ChainResidueDetails
site_idSWS_FT_FI6
Number of Residues20
DetailsCompositional bias: {"description":"Gly residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}
ChainResidueDetails
site_idSWS_FT_FI7
Number of Residues68
DetailsDomain: {"description":"KH type-2","evidences":[{"source":"HAMAP-Rule","id":"MF_01309","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI8
Number of Residues63
DetailsDomain: {"description":"S5 DRBM"}
ChainResidueDetails
site_idSWS_FT_FI9
Number of Residues1
DetailsSite: {"description":"Not modified","evidences":[{"source":"PubMed","id":"19653700","evidenceCode":"ECO:0000269"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"unpublished observations","publicationDate":"AUG-2002","authors":["Ochi K.","Takashi I.","Forbes A.","Kelleher N.L.","Garavelli J.S."]}}]}
ChainResidueDetails
site_idSWS_FT_FI10
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01364","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI11
Number of Residues63
DetailsDomain: {"description":"S4 RNA-binding"}
ChainResidueDetails

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PDB entries from 2026-01-14

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