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9ERK

Cryo-EM structure of sodium pumping Rnf complex from Acetobacterium woodii reduced with low potential ferredoxin (consensus map)

Functional Information from GO Data
ChainGOidnamespacecontents
A0005886cellular_componentplasma membrane
A0016020cellular_componentmembrane
A0022900biological_processelectron transport chain
B0005886cellular_componentplasma membrane
B0016020cellular_componentmembrane
B0022900biological_processelectron transport chain
B0046872molecular_functionmetal ion binding
B0051536molecular_functioniron-sulfur cluster binding
B0051539molecular_function4 iron, 4 sulfur cluster binding
C0005886cellular_componentplasma membrane
C0016020cellular_componentmembrane
C0022900biological_processelectron transport chain
C0046872molecular_functionmetal ion binding
C0051536molecular_functioniron-sulfur cluster binding
C0051539molecular_function4 iron, 4 sulfur cluster binding
D0005886cellular_componentplasma membrane
D0016020cellular_componentmembrane
D0022900biological_processelectron transport chain
E0005886cellular_componentplasma membrane
E0016020cellular_componentmembrane
E0022900biological_processelectron transport chain
G0005886cellular_componentplasma membrane
G0016020cellular_componentmembrane
G0022900biological_processelectron transport chain
Functional Information from PROSITE/UniProt
site_idPS00198
Number of Residues12
Details4FE4S_FER_1 4Fe-4S ferredoxin-type iron-sulfur binding region signature. CiHCGkCVgVCP
ChainResidueDetails
CCYS369-PRO380
CCYS408-PRO419
BCYS172-PRO183
BCYS246-PRO257
BCYS279-PRO290

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues120
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00459","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues59
DetailsDomain: {"description":"4Fe-4S","evidences":[{"source":"HAMAP-Rule","id":"MF_00463","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues36
DetailsDomain: {"description":"4Fe-4S ferredoxin-type 1","evidences":[{"source":"HAMAP-Rule","id":"MF_00463","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues29
DetailsDomain: {"description":"4Fe-4S ferredoxin-type 2","evidences":[{"source":"HAMAP-Rule","id":"MF_00463","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues30
DetailsDomain: {"description":"4Fe-4S ferredoxin-type 3","evidences":[{"source":"HAMAP-Rule","id":"MF_00463","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues27
DetailsDomain: {"description":"4Fe-4S ferredoxin-type 4","evidences":[{"source":"HAMAP-Rule","id":"MF_00463","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI7
Number of Residues29
DetailsDomain: {"description":"4Fe-4S ferredoxin-type 5","evidences":[{"source":"HAMAP-Rule","id":"MF_00463","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI8
Number of Residues29
DetailsDomain: {"description":"4Fe-4S ferredoxin-type 6","evidences":[{"source":"HAMAP-Rule","id":"MF_00463","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI9
Number of Residues26
DetailsRegion: {"description":"Hydrophobic","evidences":[{"source":"HAMAP-Rule","id":"MF_00463","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI10
Number of Residues16
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00463","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI11
Number of Residues12
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00711","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI12
Number of Residues32
DetailsDomain: {"description":"4Fe-4S ferredoxin-type 1","evidences":[{"source":"HAMAP-Rule","id":"MF_00461","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI13
Number of Residues30
DetailsDomain: {"description":"4Fe-4S ferredoxin-type 2","evidences":[{"source":"HAMAP-Rule","id":"MF_00461","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI14
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00461","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI15
Number of Residues122
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00462","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI16
Number of Residues1
DetailsModified residue: {"description":"FMN phosphoryl threonine","evidences":[{"source":"HAMAP-Rule","id":"MF_00462","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI17
Number of Residues100
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00478","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI18
Number of Residues20
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00479","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI19
Number of Residues1
DetailsModified residue: {"description":"FMN phosphoryl threonine","evidences":[{"source":"HAMAP-Rule","id":"MF_00479","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

239149

PDB entries from 2025-07-23

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