9EPC

Cryo-EM structure of the Plastid-encoded RNA polymerase from Sinapis alba

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000428	cellular_component	DNA-directed RNA polymerase complex
A	0003677	molecular_function	DNA binding
A	0003899	molecular_function	DNA-directed RNA polymerase activity
A	0005737	cellular_component	cytoplasm
A	0006351	biological_process	DNA-templated transcription
A	0009507	cellular_component	chloroplast
A	0016740	molecular_function	transferase activity
A	0016779	molecular_function	nucleotidyltransferase activity
A	0034062	molecular_function	5'-3' RNA polymerase activity
A	0046983	molecular_function	protein dimerization activity
B	0000428	cellular_component	DNA-directed RNA polymerase complex
B	0003677	molecular_function	DNA binding
B	0003899	molecular_function	DNA-directed RNA polymerase activity
B	0005737	cellular_component	cytoplasm
B	0006351	biological_process	DNA-templated transcription
B	0009507	cellular_component	chloroplast
B	0016740	molecular_function	transferase activity
B	0016779	molecular_function	nucleotidyltransferase activity
B	0034062	molecular_function	5'-3' RNA polymerase activity
B	0046983	molecular_function	protein dimerization activity
C	0000428	cellular_component	DNA-directed RNA polymerase complex
C	0003677	molecular_function	DNA binding
C	0003899	molecular_function	DNA-directed RNA polymerase activity
C	0006351	biological_process	DNA-templated transcription
C	0009507	cellular_component	chloroplast
C	0016740	molecular_function	transferase activity
C	0016779	molecular_function	nucleotidyltransferase activity
C	0032549	molecular_function	ribonucleoside binding
D	0000287	molecular_function	magnesium ion binding
D	0000428	cellular_component	DNA-directed RNA polymerase complex
D	0003677	molecular_function	DNA binding
D	0003899	molecular_function	DNA-directed RNA polymerase activity
D	0006351	biological_process	DNA-templated transcription
D	0008270	molecular_function	zinc ion binding
D	0009507	cellular_component	chloroplast
D	0016740	molecular_function	transferase activity
D	0016779	molecular_function	nucleotidyltransferase activity
D	0046872	molecular_function	metal ion binding
E	0000428	cellular_component	DNA-directed RNA polymerase complex
E	0003677	molecular_function	DNA binding
E	0003899	molecular_function	DNA-directed RNA polymerase activity
E	0006351	biological_process	DNA-templated transcription
E	0008270	molecular_function	zinc ion binding
E	0009507	cellular_component	chloroplast
E	0016740	molecular_function	transferase activity
E	0016779	molecular_function	nucleotidyltransferase activity
E	0046872	molecular_function	metal ion binding
H	0000427	cellular_component	plastid-encoded plastid RNA polymerase complex
H	0003676	molecular_function	nucleic acid binding
H	0003723	molecular_function	RNA binding
I	0004784	molecular_function	superoxide dismutase activity
I	0006801	biological_process	superoxide metabolic process
I	0046872	molecular_function	metal ion binding
J	0005634	cellular_component	nucleus
J	0006355	biological_process	regulation of DNA-templated transcription
J	0009416	biological_process	response to light stimulus
J	0009507	cellular_component	chloroplast
J	0090228	biological_process	positive regulation of red or far-red light signaling pathway
K	0016301	molecular_function	kinase activity
M	0000427	cellular_component	plastid-encoded plastid RNA polymerase complex
N	0004784	molecular_function	superoxide dismutase activity
N	0006801	biological_process	superoxide metabolic process
N	0046872	molecular_function	metal ion binding
O	0015035	molecular_function	protein-disulfide reductase activity
O	0045454	biological_process	cell redox homeostasis
P	0015035	molecular_function	protein-disulfide reductase activity
P	0045454	biological_process	cell redox homeostasis
Q	0005524	molecular_function	ATP binding
Q	0005737	cellular_component	cytoplasm
Q	0008360	biological_process	regulation of cell shape
Q	0009058	biological_process	biosynthetic process
Q	0016881	molecular_function	acid-amino acid ligase activity
Q	0051301	biological_process	cell division
R	0000427	cellular_component	plastid-encoded plastid RNA polymerase complex
R	0042793	biological_process	plastid transcription
S	0009507	cellular_component	chloroplast
S	0009658	biological_process	chloroplast organization
S	0009662	biological_process	etioplast organization
S	0016301	molecular_function	kinase activity
S	0016740	molecular_function	transferase activity
S	0042644	cellular_component	chloroplast nucleoid
S	0042793	biological_process	plastid transcription
S	0046872	molecular_function	metal ion binding
U	0010468	biological_process	regulation of gene expression

Functional Information from PROSITE/UniProt

site_id	PS00088
Number of Residues	8
Details	SOD_MN Manganese and iron superoxide dismutases signature. DtWEHAYY

Chain	Residue	Details
N	ASP223-TYR230
I	ASP212-TYR219

---

site_id	PS00583
Number of Residues	25
Details	PFKB_KINASES_1 pfkB family of carbohydrate kinases signature 1. GGpPsNVAisHvRLGgraafmgkvG

Chain	Residue	Details
K	GLY137-GLY161

---

site_id	PS01166
Number of Residues	13
Details	RNA_POL_BETA RNA polymerases beta chain signature. GdKVAGrHGNKGI

Chain	Residue	Details
C	GLY819-ILE831

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI3
Number of Residues	63
Details	Region: {"description":"Alpha C-terminal domain (alpha-CTD)","evidences":[{"evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI9
Number of Residues	68
Details	Domain: {"description":"S1 motif","evidences":[{"source":"PROSITE-ProRule","id":"PRU00180","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI10
Number of Residues	32
Details	Region: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI11
Number of Residues	41
Details	Compositional bias: {"description":"Basic and acidic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI12
Number of Residues	1
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"19376835","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---