Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

9COP

Yeast RAVE bound to V-ATPase V1 complex

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000139	cellular_component	Golgi membrane
A	0000166	molecular_function	nucleotide binding
A	0000221	cellular_component	vacuolar proton-transporting V-type ATPase, V1 domain
A	0000329	cellular_component	fungal-type vacuole membrane
A	0003677	molecular_function	DNA binding
A	0003729	molecular_function	mRNA binding
A	0004518	molecular_function	nuclease activity
A	0004519	molecular_function	endonuclease activity
A	0005515	molecular_function	protein binding
A	0005524	molecular_function	ATP binding
A	0005774	cellular_component	vacuolar membrane
A	0006314	biological_process	intron homing
A	0006811	biological_process	monoatomic ion transport
A	0007035	biological_process	vacuolar acidification
A	0016539	biological_process	intein-mediated protein splicing
A	0016787	molecular_function	hydrolase activity
A	0030908	biological_process	protein splicing
A	0046034	biological_process	ATP metabolic process
A	0046961	molecular_function	proton-transporting ATPase activity, rotational mechanism
A	0048388	biological_process	endosomal lumen acidification
A	0061795	biological_process	Golgi lumen acidification
A	1902600	biological_process	proton transmembrane transport
B	0000139	cellular_component	Golgi membrane
B	0000166	molecular_function	nucleotide binding
B	0000221	cellular_component	vacuolar proton-transporting V-type ATPase, V1 domain
B	0000329	cellular_component	fungal-type vacuole membrane
B	0000425	biological_process	pexophagy
B	0005515	molecular_function	protein binding
B	0005524	molecular_function	ATP binding
B	0005737	cellular_component	cytoplasm
B	0005774	cellular_component	vacuolar membrane
B	0005886	cellular_component	plasma membrane
B	0006811	biological_process	monoatomic ion transport
B	0006874	biological_process	intracellular calcium ion homeostasis
B	0007035	biological_process	vacuolar acidification
B	0010494	cellular_component	cytoplasmic stress granule
B	0033180	cellular_component	proton-transporting V-type ATPase, V1 domain
B	0045121	cellular_component	membrane raft
B	0046034	biological_process	ATP metabolic process
B	0046961	molecular_function	proton-transporting ATPase activity, rotational mechanism
B	0048388	biological_process	endosomal lumen acidification
B	0055085	biological_process	transmembrane transport
B	0061795	biological_process	Golgi lumen acidification
B	1902600	biological_process	proton transmembrane transport
B	1902906	biological_process	proteasome storage granule assembly
B	1990816	cellular_component	vacuole-mitochondrion membrane contact site
E	0000139	cellular_component	Golgi membrane
E	0000166	molecular_function	nucleotide binding
E	0000221	cellular_component	vacuolar proton-transporting V-type ATPase, V1 domain
E	0000329	cellular_component	fungal-type vacuole membrane
E	0003677	molecular_function	DNA binding
E	0003729	molecular_function	mRNA binding
E	0004518	molecular_function	nuclease activity
E	0004519	molecular_function	endonuclease activity
E	0005515	molecular_function	protein binding
E	0005524	molecular_function	ATP binding
E	0005774	cellular_component	vacuolar membrane
E	0006314	biological_process	intron homing
E	0006811	biological_process	monoatomic ion transport
E	0007035	biological_process	vacuolar acidification
E	0016539	biological_process	intein-mediated protein splicing
E	0016787	molecular_function	hydrolase activity
E	0030908	biological_process	protein splicing
E	0046034	biological_process	ATP metabolic process
E	0046961	molecular_function	proton-transporting ATPase activity, rotational mechanism
E	0048388	biological_process	endosomal lumen acidification
E	0061795	biological_process	Golgi lumen acidification
E	1902600	biological_process	proton transmembrane transport
F	0000139	cellular_component	Golgi membrane
F	0000166	molecular_function	nucleotide binding
F	0000221	cellular_component	vacuolar proton-transporting V-type ATPase, V1 domain
F	0000329	cellular_component	fungal-type vacuole membrane
F	0000425	biological_process	pexophagy
F	0005515	molecular_function	protein binding
F	0005524	molecular_function	ATP binding
F	0005737	cellular_component	cytoplasm
F	0005774	cellular_component	vacuolar membrane
F	0005886	cellular_component	plasma membrane
F	0006811	biological_process	monoatomic ion transport
F	0006874	biological_process	intracellular calcium ion homeostasis
F	0007035	biological_process	vacuolar acidification
F	0010494	cellular_component	cytoplasmic stress granule
F	0033180	cellular_component	proton-transporting V-type ATPase, V1 domain
F	0045121	cellular_component	membrane raft
F	0046034	biological_process	ATP metabolic process
F	0046961	molecular_function	proton-transporting ATPase activity, rotational mechanism
F	0048388	biological_process	endosomal lumen acidification
F	0055085	biological_process	transmembrane transport
F	0061795	biological_process	Golgi lumen acidification
F	1902600	biological_process	proton transmembrane transport
F	1902906	biological_process	proteasome storage granule assembly
F	1990816	cellular_component	vacuole-mitochondrion membrane contact site
I	0000139	cellular_component	Golgi membrane
I	0000221	cellular_component	vacuolar proton-transporting V-type ATPase, V1 domain
I	0000329	cellular_component	fungal-type vacuole membrane
I	0005515	molecular_function	protein binding
I	0005774	cellular_component	vacuolar membrane
I	0006811	biological_process	monoatomic ion transport
I	0007035	biological_process	vacuolar acidification
I	0033178	cellular_component	proton-transporting two-sector ATPase complex, catalytic domain
I	0045121	cellular_component	membrane raft
I	0046961	molecular_function	proton-transporting ATPase activity, rotational mechanism
I	0048388	biological_process	endosomal lumen acidification
I	0061795	biological_process	Golgi lumen acidification
I	1902600	biological_process	proton transmembrane transport
J	0000139	cellular_component	Golgi membrane
J	0000221	cellular_component	vacuolar proton-transporting V-type ATPase, V1 domain
J	0000329	cellular_component	fungal-type vacuole membrane
J	0005515	molecular_function	protein binding
J	0005774	cellular_component	vacuolar membrane
J	0006811	biological_process	monoatomic ion transport
J	0007035	biological_process	vacuolar acidification
J	0016471	cellular_component	vacuolar proton-transporting V-type ATPase complex
J	0046961	molecular_function	proton-transporting ATPase activity, rotational mechanism
J	0048388	biological_process	endosomal lumen acidification
J	0061795	biological_process	Golgi lumen acidification
J	1902600	biological_process	proton transmembrane transport
K	0000139	cellular_component	Golgi membrane
K	0000221	cellular_component	vacuolar proton-transporting V-type ATPase, V1 domain
K	0000329	cellular_component	fungal-type vacuole membrane
K	0005515	molecular_function	protein binding
K	0005774	cellular_component	vacuolar membrane
K	0006811	biological_process	monoatomic ion transport
K	0007035	biological_process	vacuolar acidification
K	0033178	cellular_component	proton-transporting two-sector ATPase complex, catalytic domain
K	0045121	cellular_component	membrane raft
K	0046961	molecular_function	proton-transporting ATPase activity, rotational mechanism
K	0048388	biological_process	endosomal lumen acidification
K	0061795	biological_process	Golgi lumen acidification
K	1902600	biological_process	proton transmembrane transport
L	0000139	cellular_component	Golgi membrane
L	0000221	cellular_component	vacuolar proton-transporting V-type ATPase, V1 domain
L	0000329	cellular_component	fungal-type vacuole membrane
L	0005515	molecular_function	protein binding
L	0005774	cellular_component	vacuolar membrane
L	0006811	biological_process	monoatomic ion transport
L	0007035	biological_process	vacuolar acidification
L	0016471	cellular_component	vacuolar proton-transporting V-type ATPase complex
L	0046961	molecular_function	proton-transporting ATPase activity, rotational mechanism
L	0048388	biological_process	endosomal lumen acidification
L	0061795	biological_process	Golgi lumen acidification
L	1902600	biological_process	proton transmembrane transport
M	0000139	cellular_component	Golgi membrane
M	0000221	cellular_component	vacuolar proton-transporting V-type ATPase, V1 domain
M	0000329	cellular_component	fungal-type vacuole membrane
M	0005515	molecular_function	protein binding
M	0005774	cellular_component	vacuolar membrane
M	0006811	biological_process	monoatomic ion transport
M	0007035	biological_process	vacuolar acidification
M	0016471	cellular_component	vacuolar proton-transporting V-type ATPase complex
M	0045121	cellular_component	membrane raft
M	0046961	molecular_function	proton-transporting ATPase activity, rotational mechanism
M	0048388	biological_process	endosomal lumen acidification
M	0061795	biological_process	Golgi lumen acidification
M	1902600	biological_process	proton transmembrane transport
N	0000139	cellular_component	Golgi membrane
N	0000221	cellular_component	vacuolar proton-transporting V-type ATPase, V1 domain
N	0000329	cellular_component	fungal-type vacuole membrane
N	0005515	molecular_function	protein binding
N	0005774	cellular_component	vacuolar membrane
N	0006811	biological_process	monoatomic ion transport
N	0007035	biological_process	vacuolar acidification
N	0016020	cellular_component	membrane
N	0033180	cellular_component	proton-transporting V-type ATPase, V1 domain
N	0034220	biological_process	monoatomic ion transmembrane transport
N	0046961	molecular_function	proton-transporting ATPase activity, rotational mechanism
N	0048388	biological_process	endosomal lumen acidification
N	0061795	biological_process	Golgi lumen acidification
N	1902600	biological_process	proton transmembrane transport
P	0000139	cellular_component	Golgi membrane
P	0000221	cellular_component	vacuolar proton-transporting V-type ATPase, V1 domain
P	0000329	cellular_component	fungal-type vacuole membrane
P	0005515	molecular_function	protein binding
P	0005774	cellular_component	vacuolar membrane
P	0006811	biological_process	monoatomic ion transport
P	0007035	biological_process	vacuolar acidification
P	0046961	molecular_function	proton-transporting ATPase activity, rotational mechanism
P	0048388	biological_process	endosomal lumen acidification
P	0061795	biological_process	Golgi lumen acidification
P	1902600	biological_process	proton transmembrane transport
x	0003674	molecular_function	molecular_function
x	0005515	molecular_function	protein binding
x	0005737	cellular_component	cytoplasm
x	0007035	biological_process	vacuolar acidification
x	0012505	cellular_component	endomembrane system
x	0015031	biological_process	protein transport
x	0043254	biological_process	regulation of protein-containing complex assembly
x	0043291	cellular_component	RAVE complex
x	0045022	biological_process	early endosome to late endosome transport
x	0070072	biological_process	vacuolar proton-transporting V-type ATPase complex assembly
y	0003674	molecular_function	molecular_function
y	0005515	molecular_function	protein binding
y	0005737	cellular_component	cytoplasm
y	0007035	biological_process	vacuolar acidification
y	0012505	cellular_component	endomembrane system
y	0015031	biological_process	protein transport
y	0031901	cellular_component	early endosome membrane
y	0043254	biological_process	regulation of protein-containing complex assembly
y	0043291	cellular_component	RAVE complex
y	0070072	biological_process	vacuolar proton-transporting V-type ATPase complex assembly
z	0000082	biological_process	G1/S transition of mitotic cell cycle
z	0000086	biological_process	G2/M transition of mitotic cell cycle
z	0000278	biological_process	mitotic cell cycle
z	0000409	biological_process	regulation of transcription by galactose
z	0000776	cellular_component	kinetochore
z	0000781	cellular_component	chromosome, telomeric region
z	0000921	biological_process	septin ring assembly
z	0003677	molecular_function	DNA binding
z	0003688	molecular_function	DNA replication origin binding
z	0004842	molecular_function	ubiquitin-protein transferase activity
z	0005515	molecular_function	protein binding
z	0005634	cellular_component	nucleus
z	0005737	cellular_component	cytoplasm
z	0006511	biological_process	ubiquitin-dependent protein catabolic process
z	0007035	biological_process	vacuolar acidification
z	0007096	biological_process	regulation of exit from mitosis
z	0007346	biological_process	regulation of mitotic cell cycle
z	0008053	biological_process	mitochondrial fusion
z	0010458	biological_process	exit from mitosis
z	0010828	biological_process	positive regulation of D-glucose transmembrane transport
z	0012505	cellular_component	endomembrane system
z	0016567	biological_process	protein ubiquitination
z	0019005	cellular_component	SCF ubiquitin ligase complex
z	0030466	biological_process	silent mating-type cassette heterochromatin formation
z	0031146	biological_process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
z	0031509	biological_process	subtelomeric heterochromatin formation
z	0031518	cellular_component	CBF3 complex
z	0031573	biological_process	mitotic intra-S DNA damage checkpoint signaling
z	0043254	biological_process	regulation of protein-containing complex assembly
z	0043291	cellular_component	RAVE complex
z	0045116	biological_process	protein neddylation
z	0051382	biological_process	kinetochore assembly
z	0061630	molecular_function	ubiquitin protein ligase activity
z	0065003	biological_process	protein-containing complex assembly
z	0070072	biological_process	vacuolar proton-transporting V-type ATPase complex assembly
z	0071406	biological_process	cellular response to methylmercury
z	0097602	molecular_function	cullin family protein binding
z	2000766	biological_process	negative regulation of cytoplasmic translation

Functional Information from PROSITE/UniProt

site_id	PS00152
Number of Residues	10
Details	ATPASE_ALPHA_BETA ATP synthase alpha and beta subunits signature. PPINVLPSLS

Chain	Residue	Details
B	PRO371-SER380
A	PRO907-SER916

site_id	PS00290
Number of Residues	7
Details	IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. FTCNATH

Chain	Residue	Details
A	PHE356-HIS362

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	14
Details	Binding site: {"evidences":[{"source":"UniProtKB","id":"P38606","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	2
Details	Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI3
Number of Residues	4
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI4
Number of Residues	2
Details	Binding site: {"evidences":[{"source":"UniProtKB","id":"P21281","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

site_id	SWS_FT_FI5
Number of Residues	2
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"19779198","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI6
Number of Residues	4
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"22106047","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

site_id	SWS_FT_FI7
Number of Residues	36
Details	Repeat: {"description":"WD 1"}

Chain

Residue

Details

site_id	SWS_FT_FI8
Number of Residues	40
Details	Repeat: {"description":"WD 2"}

Chain

Residue

Details

site_id	SWS_FT_FI9
Number of Residues	49
Details	Repeat: {"description":"WD 3"}

Chain

Residue

Details

site_id	SWS_FT_FI10
Number of Residues	39
Details	Repeat: {"description":"WD 4"}

Chain

Residue

Details

site_id	SWS_FT_FI11
Number of Residues	41
Details	Repeat: {"description":"WD 6"}

Chain

Residue

Details

site_id	SWS_FT_FI12
Number of Residues	41
Details	Repeat: {"description":"WD 7"}

Chain

Residue

Details

site_id	SWS_FT_FI13
Number of Residues	41
Details	Repeat: {"description":"WD 8"}

Chain

Residue

Details

Catalytic Information from CSA

site_id	MCSA1
Number of Residues
Details	M-CSA 508

Chain

Residue

Details

site_id	MCSA2
Number of Residues
Details	M-CSA 508

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)