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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9CB7

DeltaNhp10 INO80 bound to S.c 0/40 nucleosome, Ino80-Nucleosome

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
A0000500cellular_componentRNA polymerase I upstream activating factor complex
A0000786cellular_componentnucleosome
A0003677molecular_functionDNA binding
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005694cellular_componentchromosome
A0006325biological_processchromatin organization
A0006355biological_processregulation of DNA-templated transcription
A0006878biological_processintracellular copper ion homeostasis
A0008823molecular_functioncupric reductase (NADH) activity
A0009060biological_processaerobic respiration
A0009303biological_processrRNA transcription
A0042790biological_processnucleolar large rRNA transcription by RNA polymerase I
A0043505cellular_componentCENP-A containing nucleosome
A0043935biological_processsexual sporulation resulting in formation of a cellular spore
A0045943biological_processpositive regulation of transcription by RNA polymerase I
A0070911biological_processglobal genome nucleotide-excision repair
B0000786cellular_componentnucleosome
B0003677molecular_functionDNA binding
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005694cellular_componentchromosome
B0006334biological_processnucleosome assembly
B0030527molecular_functionstructural constituent of chromatin
C0000122biological_processnegative regulation of transcription by RNA polymerase II
C0000786cellular_componentnucleosome
C0003677molecular_functionDNA binding
C0005515molecular_functionprotein binding
C0005634cellular_componentnucleus
C0005694cellular_componentchromosome
C0006281biological_processDNA repair
C0006325biological_processchromatin organization
C0006974biological_processDNA damage response
C0030527molecular_functionstructural constituent of chromatin
C0031507biological_processheterochromatin formation
D0000122biological_processnegative regulation of transcription by RNA polymerase II
D0000786cellular_componentnucleosome
D0003677molecular_functionDNA binding
D0005515molecular_functionprotein binding
D0005634cellular_componentnucleus
D0005694cellular_componentchromosome
D0006301biological_processDNA damage tolerance
D0006325biological_processchromatin organization
D0006355biological_processregulation of DNA-templated transcription
E0000500cellular_componentRNA polymerase I upstream activating factor complex
E0000786cellular_componentnucleosome
E0003677molecular_functionDNA binding
E0005515molecular_functionprotein binding
E0005634cellular_componentnucleus
E0005694cellular_componentchromosome
E0006325biological_processchromatin organization
E0006355biological_processregulation of DNA-templated transcription
E0006878biological_processintracellular copper ion homeostasis
E0008823molecular_functioncupric reductase (NADH) activity
E0009060biological_processaerobic respiration
E0009303biological_processrRNA transcription
E0042790biological_processnucleolar large rRNA transcription by RNA polymerase I
E0043505cellular_componentCENP-A containing nucleosome
E0043935biological_processsexual sporulation resulting in formation of a cellular spore
E0045943biological_processpositive regulation of transcription by RNA polymerase I
E0070911biological_processglobal genome nucleotide-excision repair
F0000786cellular_componentnucleosome
F0003677molecular_functionDNA binding
F0005515molecular_functionprotein binding
F0005634cellular_componentnucleus
F0005694cellular_componentchromosome
F0006334biological_processnucleosome assembly
F0030527molecular_functionstructural constituent of chromatin
G0000122biological_processnegative regulation of transcription by RNA polymerase II
G0000786cellular_componentnucleosome
G0003677molecular_functionDNA binding
G0005515molecular_functionprotein binding
G0005634cellular_componentnucleus
G0005694cellular_componentchromosome
G0006281biological_processDNA repair
G0006325biological_processchromatin organization
G0006974biological_processDNA damage response
G0030527molecular_functionstructural constituent of chromatin
G0031507biological_processheterochromatin formation
H0000122biological_processnegative regulation of transcription by RNA polymerase II
H0000786cellular_componentnucleosome
H0003677molecular_functionDNA binding
H0005515molecular_functionprotein binding
H0005634cellular_componentnucleus
H0005694cellular_componentchromosome
H0006301biological_processDNA damage tolerance
H0006325biological_processchromatin organization
H0006355biological_processregulation of DNA-templated transcription
Q0000166molecular_functionnucleotide binding
Q0000722biological_processtelomere maintenance via recombination
Q0000775cellular_componentchromosome, centromeric region
Q0000781cellular_componentchromosome, telomeric region
Q0003677molecular_functionDNA binding
Q0005515molecular_functionprotein binding
Q0005524molecular_functionATP binding
Q0005634cellular_componentnucleus
Q0006281biological_processDNA repair
Q0006338biological_processchromatin remodeling
Q0006355biological_processregulation of DNA-templated transcription
Q0006357biological_processregulation of transcription by RNA polymerase II
Q0006366biological_processtranscription by RNA polymerase II
Q0006974biological_processDNA damage response
Q0010557biological_processpositive regulation of macromolecule biosynthetic process
Q0016787molecular_functionhydrolase activity
Q0016887molecular_functionATP hydrolysis activity
Q0031011cellular_componentIno80 complex
Q0031509biological_processsubtelomeric heterochromatin formation
Q0032006biological_processregulation of TOR signaling
Q0033554biological_processcellular response to stress
Q0040029biological_processepigenetic regulation of gene expression
Q0042393molecular_functionhistone binding
Q0045944biological_processpositive regulation of transcription by RNA polymerase II
Q0051276biological_processchromosome organization
Z0003674molecular_functionmolecular_function
Z0003677molecular_functionDNA binding
Z0005634cellular_componentnucleus
Z0006281biological_processDNA repair
Z0006325biological_processchromatin organization
Z0006338biological_processchromatin remodeling
Z0006355biological_processregulation of DNA-templated transcription
Z0006974biological_processDNA damage response
Z0008150biological_processbiological_process
Z0031011cellular_componentIno80 complex
Functional Information from PROSITE/UniProt
site_idPS00014
Number of Residues4
DetailsER_TARGET Endoplasmic reticulum targeting sequence. SQEL
ChainResidueDetails
CSER128-LEU131
site_idPS00046
Number of Residues7
DetailsHISTONE_H2A Histone H2A signature. AGLtFPV
ChainResidueDetails
CALA22-VAL28
site_idPS00047
Number of Residues5
DetailsHISTONE_H4 Histone H4 signature. GAKRH
ChainResidueDetails
BGLY15-HIS19
site_idPS00322
Number of Residues7
DetailsHISTONE_H3_1 Histone H3 signature 1. KAPRKQL
ChainResidueDetails
ALYS14-LEU20
site_idPS00357
Number of Residues23
DetailsHISTONE_H2B Histone H2B signature. REIQTavRlILpGELaKHAVSEG
ChainResidueDetails
DARG95-GLY117
site_idPS00959
Number of Residues9
DetailsHISTONE_H3_2 Histone H3 signature 2. PFqRLVREI
ChainResidueDetails
APRO66-ILE74
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsModified residue: {"description":"N6-propionyllysine; alternate","evidences":[{"source":"PubMed","id":"19113941","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI2
Number of Residues2
DetailsModified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"17194708","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI3
Number of Residues2
DetailsModified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"PubMed","id":"22389435","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI4
Number of Residues4
DetailsModified residue: {"description":"N6-succinyllysine; alternate","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI5
Number of Residues4
DetailsModified residue: {"description":"N6-propionyllysine; alternate","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI6
Number of Residues2
DetailsModified residue: {"description":"Phosphoserine; by PAK2","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI7
Number of Residues4
DetailsModified residue: {"description":"Phosphotyrosine","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI8
Number of Residues2
DetailsModified residue: {"description":"N6-glutaryllysine; alternate","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI9
Number of Residues2
DetailsModified residue: {"description":"N6-succinyllysine","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI10
Number of Residues2
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in UFM1); alternate","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI11
Number of Residues4
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate","evidences":[{"source":"UniProtKB","id":"P62805","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI12
Number of Residues2
DetailsSite: {"description":"Not ubiquitinated","evidences":[{"source":"PubMed","id":"10642555","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"2201907","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI13
Number of Residues5
DetailsModified residue: {"description":"N6-succinyllysine","evidences":[{"source":"PubMed","id":"22389435","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI14
Number of Residues2
DetailsModified residue: {"description":"N5-methylglutamine","evidences":[{"source":"PubMed","id":"24352239","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI15
Number of Residues2
DetailsModified residue: {"description":"N6-malonyllysine; alternate","evidences":[{"source":"PubMed","id":"22389435","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI16
Number of Residues2
DetailsModified residue: {"description":"N6,N6-dimethyllysine","evidences":[{"source":"PubMed","id":"19113941","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI17
Number of Residues4
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"10642555","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"12535538","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"12535539","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"14660635","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"15280549","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16432255","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails
site_idSWS_FT_FI18
Number of Residues172
DetailsDomain: {"description":"Helicase ATP-binding","evidences":[{"source":"PROSITE-ProRule","id":"PRU00541","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI19
Number of Residues3
DetailsMotif: {"description":"DEAQ box"}
ChainResidueDetails
site_idSWS_FT_FI20
Number of Residues7
DetailsBinding site: {"evidences":[{"source":"PROSITE-ProRule","id":"PRU00541","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

243531

PDB entries from 2025-10-22

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