9C1J

Rhesus rotavirus (reversed structure at 2.72 Angstrom resolution)

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
2	0019028	cellular_component	viral capsid
2	0019062	biological_process	virion attachment to host cell
2	0020002	cellular_component	host cell plasma membrane
2	0039624	cellular_component	viral outer capsid
2	0039665	biological_process	permeabilization of host organelle membrane involved in viral entry into host cell
2	0044163	cellular_component	host cytoskeleton
2	0044168	cellular_component	host cell rough endoplasmic reticulum
2	0044172	cellular_component	host cell endoplasmic reticulum-Golgi intermediate compartment
2	0044423	cellular_component	virion component
2	0046718	biological_process	symbiont entry into host cell
2	0140267	biological_process	symbiont entry into host cell via permeabilization of host membrane
3	0019028	cellular_component	viral capsid
3	0019062	biological_process	virion attachment to host cell
3	0020002	cellular_component	host cell plasma membrane
3	0039624	cellular_component	viral outer capsid
3	0039665	biological_process	permeabilization of host organelle membrane involved in viral entry into host cell
3	0044163	cellular_component	host cytoskeleton
3	0044168	cellular_component	host cell rough endoplasmic reticulum
3	0044172	cellular_component	host cell endoplasmic reticulum-Golgi intermediate compartment
3	0044423	cellular_component	virion component
3	0046718	biological_process	symbiont entry into host cell
3	0140267	biological_process	symbiont entry into host cell via permeabilization of host membrane
4	0019028	cellular_component	viral capsid
4	0019062	biological_process	virion attachment to host cell
4	0020002	cellular_component	host cell plasma membrane
4	0039624	cellular_component	viral outer capsid
4	0039665	biological_process	permeabilization of host organelle membrane involved in viral entry into host cell
4	0044163	cellular_component	host cytoskeleton
4	0044168	cellular_component	host cell rough endoplasmic reticulum
4	0044172	cellular_component	host cell endoplasmic reticulum-Golgi intermediate compartment
4	0044423	cellular_component	virion component
4	0046718	biological_process	symbiont entry into host cell
4	0140267	biological_process	symbiont entry into host cell via permeabilization of host membrane
A	0003723	molecular_function	RNA binding
A	0019013	cellular_component	viral nucleocapsid
A	0019028	cellular_component	viral capsid
A	0039616	cellular_component	T=2 icosahedral viral capsid
A	0039625	cellular_component	viral inner capsid
A	0044423	cellular_component	virion component
B	0003723	molecular_function	RNA binding
B	0019013	cellular_component	viral nucleocapsid
B	0019028	cellular_component	viral capsid
B	0039616	cellular_component	T=2 icosahedral viral capsid
B	0039625	cellular_component	viral inner capsid
B	0044423	cellular_component	virion component
C	0005198	molecular_function	structural molecule activity
C	0019028	cellular_component	viral capsid
C	0019031	cellular_component	viral envelope
C	0019064	biological_process	fusion of virus membrane with host plasma membrane
C	0039621	cellular_component	T=13 icosahedral viral capsid
C	0039626	cellular_component	viral intermediate capsid
C	0044423	cellular_component	virion component
C	0044650	biological_process	adhesion of symbiont to host cell
C	0046789	molecular_function	host cell surface receptor binding
C	0046872	molecular_function	metal ion binding
D	0005198	molecular_function	structural molecule activity
D	0019028	cellular_component	viral capsid
D	0019031	cellular_component	viral envelope
D	0019064	biological_process	fusion of virus membrane with host plasma membrane
D	0039621	cellular_component	T=13 icosahedral viral capsid
D	0039626	cellular_component	viral intermediate capsid
D	0044423	cellular_component	virion component
D	0044650	biological_process	adhesion of symbiont to host cell
D	0046789	molecular_function	host cell surface receptor binding
D	0046872	molecular_function	metal ion binding
E	0005198	molecular_function	structural molecule activity
E	0019028	cellular_component	viral capsid
E	0019031	cellular_component	viral envelope
E	0019064	biological_process	fusion of virus membrane with host plasma membrane
E	0039621	cellular_component	T=13 icosahedral viral capsid
E	0039626	cellular_component	viral intermediate capsid
E	0044423	cellular_component	virion component
E	0044650	biological_process	adhesion of symbiont to host cell
E	0046789	molecular_function	host cell surface receptor binding
E	0046872	molecular_function	metal ion binding
f	0005198	molecular_function	structural molecule activity
f	0019028	cellular_component	viral capsid
f	0019031	cellular_component	viral envelope
f	0019064	biological_process	fusion of virus membrane with host plasma membrane
f	0039621	cellular_component	T=13 icosahedral viral capsid
f	0039626	cellular_component	viral intermediate capsid
f	0044423	cellular_component	virion component
f	0044650	biological_process	adhesion of symbiont to host cell
f	0046789	molecular_function	host cell surface receptor binding
f	0046872	molecular_function	metal ion binding
F	0005198	molecular_function	structural molecule activity
F	0019028	cellular_component	viral capsid
F	0019031	cellular_component	viral envelope
F	0019064	biological_process	fusion of virus membrane with host plasma membrane
F	0039621	cellular_component	T=13 icosahedral viral capsid
F	0039626	cellular_component	viral intermediate capsid
F	0044423	cellular_component	virion component
F	0044650	biological_process	adhesion of symbiont to host cell
F	0046789	molecular_function	host cell surface receptor binding
F	0046872	molecular_function	metal ion binding
g	0005198	molecular_function	structural molecule activity
g	0019028	cellular_component	viral capsid
g	0019031	cellular_component	viral envelope
g	0019064	biological_process	fusion of virus membrane with host plasma membrane
g	0039621	cellular_component	T=13 icosahedral viral capsid
g	0039626	cellular_component	viral intermediate capsid
g	0044423	cellular_component	virion component
g	0044650	biological_process	adhesion of symbiont to host cell
g	0046789	molecular_function	host cell surface receptor binding
g	0046872	molecular_function	metal ion binding
G	0005198	molecular_function	structural molecule activity
G	0019028	cellular_component	viral capsid
G	0019031	cellular_component	viral envelope
G	0019064	biological_process	fusion of virus membrane with host plasma membrane
G	0039621	cellular_component	T=13 icosahedral viral capsid
G	0039626	cellular_component	viral intermediate capsid
G	0044423	cellular_component	virion component
G	0044650	biological_process	adhesion of symbiont to host cell
G	0046789	molecular_function	host cell surface receptor binding
G	0046872	molecular_function	metal ion binding
h	0005198	molecular_function	structural molecule activity
h	0019028	cellular_component	viral capsid
h	0019031	cellular_component	viral envelope
h	0019064	biological_process	fusion of virus membrane with host plasma membrane
h	0039621	cellular_component	T=13 icosahedral viral capsid
h	0039626	cellular_component	viral intermediate capsid
h	0044423	cellular_component	virion component
h	0044650	biological_process	adhesion of symbiont to host cell
h	0046789	molecular_function	host cell surface receptor binding
h	0046872	molecular_function	metal ion binding
H	0005198	molecular_function	structural molecule activity
H	0019028	cellular_component	viral capsid
H	0019031	cellular_component	viral envelope
H	0019064	biological_process	fusion of virus membrane with host plasma membrane
H	0039621	cellular_component	T=13 icosahedral viral capsid
H	0039626	cellular_component	viral intermediate capsid
H	0044423	cellular_component	virion component
H	0044650	biological_process	adhesion of symbiont to host cell
H	0046789	molecular_function	host cell surface receptor binding
H	0046872	molecular_function	metal ion binding
i	0005198	molecular_function	structural molecule activity
i	0019028	cellular_component	viral capsid
i	0019031	cellular_component	viral envelope
i	0019064	biological_process	fusion of virus membrane with host plasma membrane
i	0039621	cellular_component	T=13 icosahedral viral capsid
i	0039626	cellular_component	viral intermediate capsid
i	0044423	cellular_component	virion component
i	0044650	biological_process	adhesion of symbiont to host cell
i	0046789	molecular_function	host cell surface receptor binding
i	0046872	molecular_function	metal ion binding
I	0005198	molecular_function	structural molecule activity
I	0019028	cellular_component	viral capsid
I	0019031	cellular_component	viral envelope
I	0019064	biological_process	fusion of virus membrane with host plasma membrane
I	0039621	cellular_component	T=13 icosahedral viral capsid
I	0039626	cellular_component	viral intermediate capsid
I	0044423	cellular_component	virion component
I	0044650	biological_process	adhesion of symbiont to host cell
I	0046789	molecular_function	host cell surface receptor binding
I	0046872	molecular_function	metal ion binding
j	0005198	molecular_function	structural molecule activity
j	0019028	cellular_component	viral capsid
j	0019031	cellular_component	viral envelope
j	0019064	biological_process	fusion of virus membrane with host plasma membrane
j	0039621	cellular_component	T=13 icosahedral viral capsid
j	0039626	cellular_component	viral intermediate capsid
j	0044423	cellular_component	virion component
j	0044650	biological_process	adhesion of symbiont to host cell
j	0046789	molecular_function	host cell surface receptor binding
j	0046872	molecular_function	metal ion binding
J	0005198	molecular_function	structural molecule activity
J	0019028	cellular_component	viral capsid
J	0019031	cellular_component	viral envelope
J	0019064	biological_process	fusion of virus membrane with host plasma membrane
J	0039621	cellular_component	T=13 icosahedral viral capsid
J	0039626	cellular_component	viral intermediate capsid
J	0044423	cellular_component	virion component
J	0044650	biological_process	adhesion of symbiont to host cell
J	0046789	molecular_function	host cell surface receptor binding
J	0046872	molecular_function	metal ion binding
k	0005198	molecular_function	structural molecule activity
k	0019028	cellular_component	viral capsid
k	0019031	cellular_component	viral envelope
k	0019064	biological_process	fusion of virus membrane with host plasma membrane
k	0039621	cellular_component	T=13 icosahedral viral capsid
k	0039626	cellular_component	viral intermediate capsid
k	0044423	cellular_component	virion component
k	0044650	biological_process	adhesion of symbiont to host cell
k	0046789	molecular_function	host cell surface receptor binding
k	0046872	molecular_function	metal ion binding
K	0005198	molecular_function	structural molecule activity
K	0019028	cellular_component	viral capsid
K	0019031	cellular_component	viral envelope
K	0019064	biological_process	fusion of virus membrane with host plasma membrane
K	0039621	cellular_component	T=13 icosahedral viral capsid
K	0039626	cellular_component	viral intermediate capsid
K	0044423	cellular_component	virion component
K	0044650	biological_process	adhesion of symbiont to host cell
K	0046789	molecular_function	host cell surface receptor binding
K	0046872	molecular_function	metal ion binding
L	0005198	molecular_function	structural molecule activity
L	0019028	cellular_component	viral capsid
L	0019031	cellular_component	viral envelope
L	0019064	biological_process	fusion of virus membrane with host plasma membrane
L	0039621	cellular_component	T=13 icosahedral viral capsid
L	0039626	cellular_component	viral intermediate capsid
L	0044423	cellular_component	virion component
L	0044650	biological_process	adhesion of symbiont to host cell
L	0046789	molecular_function	host cell surface receptor binding
L	0046872	molecular_function	metal ion binding
M	0005198	molecular_function	structural molecule activity
M	0019028	cellular_component	viral capsid
M	0019031	cellular_component	viral envelope
M	0019064	biological_process	fusion of virus membrane with host plasma membrane
M	0039621	cellular_component	T=13 icosahedral viral capsid
M	0039626	cellular_component	viral intermediate capsid
M	0044423	cellular_component	virion component
M	0044650	biological_process	adhesion of symbiont to host cell
M	0046789	molecular_function	host cell surface receptor binding
M	0046872	molecular_function	metal ion binding
N	0005198	molecular_function	structural molecule activity
N	0019028	cellular_component	viral capsid
N	0019031	cellular_component	viral envelope
N	0019064	biological_process	fusion of virus membrane with host plasma membrane
N	0039621	cellular_component	T=13 icosahedral viral capsid
N	0039626	cellular_component	viral intermediate capsid
N	0044423	cellular_component	virion component
N	0044650	biological_process	adhesion of symbiont to host cell
N	0046789	molecular_function	host cell surface receptor binding
N	0046872	molecular_function	metal ion binding
O	0005198	molecular_function	structural molecule activity
O	0019028	cellular_component	viral capsid
O	0019031	cellular_component	viral envelope
O	0019064	biological_process	fusion of virus membrane with host plasma membrane
O	0039621	cellular_component	T=13 icosahedral viral capsid
O	0039626	cellular_component	viral intermediate capsid
O	0044423	cellular_component	virion component
O	0044650	biological_process	adhesion of symbiont to host cell
O	0046789	molecular_function	host cell surface receptor binding
O	0046872	molecular_function	metal ion binding

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	38
Details	Region: {"description":"CNP motif; interaction with ITGAV/ITGB3","evidences":[{"source":"HAMAP-Rule","id":"MF_04131","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"15452204","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	38
Details	Region: {"description":"LVD motif; interaction with ITGA4/ITGB1 heterodimer","evidences":[{"source":"HAMAP-Rule","id":"MF_04131","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	38
Details	Region: {"description":"GPR motif; interaction with ITGAX/ITGB2","evidences":[{"source":"HAMAP-Rule","id":"MF_04131","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	114
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_04131","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"19520960","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	57
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_04131","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"19487668","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19520960","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	19
Details	Glycosylation: {"description":"N-linked (GlcNAc...) asparagine; by host","evidences":[{"source":"PubMed","id":"19487668","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21157433","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI7
Number of Residues	693
Details	Region: {"description":"Spike body and stalk (antigen domain)","evidences":[{"source":"HAMAP-Rule","id":"MF_04132","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21157433","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI8
Number of Residues	60
Details	Region: {"description":"Hydrophobic; possible role in virus entry into host cell","evidences":[{"source":"HAMAP-Rule","id":"MF_04132","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"20375171","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI9
Number of Residues	81
Details	Coiled coil: {"evidences":[{"source":"HAMAP-Rule","id":"MF_04132","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21157433","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI10
Number of Residues	6
Details	Motif: {"description":"DGE motif; interaction with ITGA2/ITGB1 heterodimer","evidences":[{"source":"HAMAP-Rule","id":"MF_04132","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"11112480","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI11
Number of Residues	6
Details	Motif: {"description":"YGL motif; interaction with ITGA4","evidences":[{"source":"HAMAP-Rule","id":"MF_04132","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"16298987","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI14
Number of Residues	209
Details	Region: {"description":"Interaction with the inner capsid protein VP2","evidences":[{"source":"HAMAP-Rule","id":"MF_04129","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI15
Number of Residues	57
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_04129","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---