9C1I

Rhesus rotavirus (VP5*/VP8* structure at 3.52 Angstrom resolution)

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
2	0019028	cellular_component	viral capsid
2	0019058	biological_process	viral life cycle
2	0019062	biological_process	virion attachment to host cell
2	0020002	cellular_component	host cell plasma membrane
2	0039624	cellular_component	viral outer capsid
2	0039665	biological_process	permeabilization of host organelle membrane involved in viral entry into host cell
2	0044163	cellular_component	host cytoskeleton
2	0044168	cellular_component	host cell rough endoplasmic reticulum
2	0044172	cellular_component	host cell endoplasmic reticulum-Golgi intermediate compartment
2	0044423	cellular_component	virion component
2	0046718	biological_process	symbiont entry into host cell
2	0140267	biological_process	symbiont entry into host cell via permeabilization of host membrane
3	0019028	cellular_component	viral capsid
3	0019058	biological_process	viral life cycle
3	0019062	biological_process	virion attachment to host cell
3	0020002	cellular_component	host cell plasma membrane
3	0039624	cellular_component	viral outer capsid
3	0039665	biological_process	permeabilization of host organelle membrane involved in viral entry into host cell
3	0044163	cellular_component	host cytoskeleton
3	0044168	cellular_component	host cell rough endoplasmic reticulum
3	0044172	cellular_component	host cell endoplasmic reticulum-Golgi intermediate compartment
3	0044423	cellular_component	virion component
3	0046718	biological_process	symbiont entry into host cell
3	0140267	biological_process	symbiont entry into host cell via permeabilization of host membrane

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	318
Details	Region: {"description":"Spike head","evidences":[{"source":"HAMAP-Rule","id":"MF_04132","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"21157433","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	40
Details	Region: {"description":"Hydrophobic; possible role in virus entry into host cell","evidences":[{"source":"HAMAP-Rule","id":"MF_04132","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"20375171","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	4
Details	Motif: {"description":"DGE motif; interaction with ITGA2/ITGB1 heterodimer","evidences":[{"source":"HAMAP-Rule","id":"MF_04132","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"11112480","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	4
Details	Motif: {"description":"YGL motif; interaction with ITGA4","evidences":[{"source":"HAMAP-Rule","id":"MF_04132","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"16298987","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	4
Details	Site: {"description":"Binding to sialic acid","evidences":[{"source":"HAMAP-Rule","id":"MF_04132","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"18974199","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---