9BKD
The structure of human Pdcd4 bound to the 40S small ribosomal subunit
Functional Information from PROSITE/UniProt
site_id | PS00052 |
Number of Residues | 27 |
Details | RIBOSOMAL_S7 Ribosomal protein S7 signature. ErLtnsMMmhgrnnGKKlmtvrIVkhA |
Chain | Residue | Details |
V | GLU70-ALA96 |
site_id | PS00053 |
Number of Residues | 18 |
Details | RIBOSOMAL_S8 Ribosomal protein S8 signature. GfiVLTTSaGIMdheeAR |
Chain | Residue | Details |
J | GLY100-ARG117 |
site_id | PS00054 |
Number of Residues | 23 |
Details | RIBOSOMAL_S11 Ribosomal protein S11 signature. LrALarS.GMkIgrieDvTPiPSD |
Chain | Residue | Details |
P | LEU116-ASP138 |
site_id | PS00055 |
Number of Residues | 8 |
Details | RIBOSOMAL_S12 Ribosomal protein S12 signature. KqPNSAiR |
Chain | Residue | Details |
E | LYS60-ARG67 |
site_id | PS00056 |
Number of Residues | 13 |
Details | RIBOSOMAL_S17 Ribosomal protein S17 signature. GDiVtVgEcRPLS |
Chain | Residue | Details |
B | GLY123-SER135 |
site_id | PS00299 |
Number of Residues | 26 |
Details | UBIQUITIN_1 Ubiquitin domain signature. KakIqDkegIPpdqQrLIFaGkqleD |
Chain | Residue | Details |
k | LYS27-ASP52 |
site_id | PS00323 |
Number of Residues | 25 |
Details | RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKtfnqveIkpemIGhyLGEFsiT |
Chain | Residue | Details |
b | ASN98-THR122 |
site_id | PS00360 |
Number of Residues | 19 |
Details | RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGhvAQiyAirqSiSKAL |
Chain | Residue | Details |
Y | GLY74-LEU92 |
site_id | PS00361 |
Number of Residues | 16 |
Details | RIBOSOMAL_S10 Ribosomal protein S10 signature. AkekNLkvkGPVrMPT |
Chain | Residue | Details |
h | ALA43-THR58 |
site_id | PS00362 |
Number of Residues | 31 |
Details | RIBOSOMAL_S15 Ribosomal protein S15 signature. VrkHLernRkDkdAkfrLilIesrihrLarY |
Chain | Residue | Details |
I | VAL98-TYR128 |
site_id | PS00527 |
Number of Residues | 23 |
Details | RIBOSOMAL_S14 Ribosomal protein S14 signature. RvCsnrhglirkyg.LNMCRqCFR |
Chain | Residue | Details |
i | ARG22-ARG44 |
site_id | PS00528 |
Number of Residues | 15 |
Details | RIBOSOMAL_S4E Ribosomal protein S4e signature. HlKRVAaPkhWmLdK |
Chain | Residue | Details |
C | HIS8-LYS22 |
site_id | PS00529 |
Number of Residues | 23 |
Details | RIBOSOMAL_S24E Ribosomal protein S24e signature. FGggKTtGFGmIYDSldyakknE |
Chain | Residue | Details |
T | PHE64-GLU86 |
site_id | PS00548 |
Number of Residues | 37 |
Details | RIBOSOMAL_S3 Ribosomal protein S3 signature. AKsmkfvdGlMihSgdpVnyyVDtavrhvlLrqGvlG |
Chain | Residue | Details |
Z | ALA147-GLY183 |
site_id | PS00578 |
Number of Residues | 12 |
Details | RIBOSOMAL_S6E Ribosomal protein S6e signature. ISGGnDkqGfPM |
Chain | Residue | Details |
S | ILE52-MET63 |
site_id | PS00585 |
Number of Residues | 33 |
Details | RIBOSOMAL_S5 Ribosomal protein S5 signature. GQrtrFkAfvAIGDyn.GhVGlGvkcsk.EVat.AI |
Chain | Residue | Details |
L | GLY119-ILE151 |
site_id | PS00628 |
Number of Residues | 20 |
Details | RIBOSOMAL_S19E Ribosomal protein S19e signature. PshfsrgSksVaRrVLQaLE |
Chain | Residue | Details |
d | PRO89-GLU108 |
site_id | PS00632 |
Number of Residues | 25 |
Details | RIBOSOMAL_S4 Ribosomal protein S4 signature. LErRLqtqVFKlglAkSihhARvLI |
Chain | Residue | Details |
D | LEU106-ILE130 |
site_id | PS00646 |
Number of Residues | 14 |
Details | RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHfwGlrVRGQ |
Chain | Residue | Details |
f | ARG121-GLN134 |
site_id | PS00678 |
Number of Residues | 15 |
Details | WD_REPEATS_1 Trp-Asp (WD) repeats signature. ALSGswDgTLRLWDL |
Chain | Residue | Details |
c | ALA78-LEU92 | |
c | ILE120-THR134 | |
c | ILE165-LEU179 | |
c | CYS207-LEU221 |
site_id | PS00712 |
Number of Residues | 16 |
Details | RIBOSOMAL_S17E Ribosomal protein S17e signature. IpSKkLRNkIAGYvTH |
Chain | Residue | Details |
M | ILE41-HIS56 |
site_id | PS00733 |
Number of Residues | 8 |
Details | RIBOSOMAL_S26E Ribosomal protein S26e signature. YCVSCAIH |
Chain | Residue | Details |
Q | TYR73-HIS80 |
site_id | PS00948 |
Number of Residues | 14 |
Details | RIBOSOMAL_S7E Ribosomal protein S7e signature. RLvRELEKKFSgKH |
Chain | Residue | Details |
G | ARG78-HIS91 |
site_id | PS00961 |
Number of Residues | 9 |
Details | RIBOSOMAL_S28E Ribosomal protein S28e signature. ESEREARrL |
Chain | Residue | Details |
n | GLU60-LEU68 |
site_id | PS00962 |
Number of Residues | 12 |
Details | RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. VlKFLAAGTHLG |
Chain | Residue | Details |
N | VAL15-GLY26 |
site_id | PS00963 |
Number of Residues | 25 |
Details | RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PrlLVVtDpraDhqpLtEasyvNLP |
Chain | Residue | Details |
N | PRO119-PRO143 |
site_id | PS00996 |
Number of Residues | 9 |
Details | RIBOSOMAL_S21E Ribosomal protein S21e signature. LYVPRKCSA |
Chain | Residue | Details |
K | LEU11-ALA19 |
site_id | PS01168 |
Number of Residues | 33 |
Details | RIBOSOMAL_S27E Ribosomal protein S27e signature. KCpgCykittvFShAqtvvlCvgCStvLcqPtG |
Chain | Residue | Details |
H | LYS36-GLY68 |
site_id | PS01189 |
Number of Residues | 19 |
Details | RIBOSOMAL_S12E Ribosomal protein S12e signature. ALQevLktAlihDGLarGI |
Chain | Residue | Details |
m | ALA17-ILE35 |
site_id | PS01191 |
Number of Residues | 13 |
Details | RIBOSOMAL_S3AE Ribosomal protein S3Ae signature. LkGRVfEvSLaDL |
Chain | Residue | Details |
O | LEU62-LEU74 |
site_id | PS01193 |
Number of Residues | 20 |
Details | RIBOSOMAL_S8E Ribosomal protein S8e signature. RrkTGGkrkpy.HkKrKyELG |
Chain | Residue | Details |
R | ARG11-GLY30 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 1 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:24275569 |
Chain | Residue | Details |
P | SER16 | |
O | LYS249 |
site_id | SWS_FT_FI2 |
Number of Residues | 1 |
Details | MOD_RES: Phosphothreonine => ECO:0007744|PubMed:18691976 |
Chain | Residue | Details |
P | THR133 | |
L | THR270 | |
H | CYS56 | |
H | CYS59 |
site_id | SWS_FT_FI3 |
Number of Residues | 1 |
Details | MOD_RES: Phosphoserine => ECO:0007744|PubMed:23186163 |
Chain | Residue | Details |
P | SER139 | |
e | LYS66 | |
c | THR96 |
site_id | SWS_FT_FI4 |
Number of Residues | 4 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:28112733 |
Chain | Residue | Details |
P | LYS61 | |
f | LYS94 | |
P | LYS63 | |
P | LYS106 |
site_id | SWS_FT_FI5 |
Number of Residues | 1 |
Details | MOD_RES: N6-acetyllysine => ECO:0007744|PubMed:19608861 |
Chain | Residue | Details |
N | LYS52 | |
U | SER313 | |
U | SER317 |
site_id | SWS_FT_FI6 |
Number of Residues | 1 |
Details | MOD_RES: N6-acetyllysine; alternate => ECO:0000250|UniProtKB:P14206 |
Chain | Residue | Details |
N | LYS89 | |
U | SER78 | |
Z | ARG67 |
site_id | SWS_FT_FI7 |
Number of Residues | 1 |
Details | MOD_RES: Phosphothreonine => ECO:0007744|PubMed:23186163 |
Chain | Residue | Details |
N | THR97 | |
k | LYS113 |
site_id | SWS_FT_FI8 |
Number of Residues | 2 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:28112733 |
Chain | Residue | Details |
N | LYS89 | |
L | LYS275 |
site_id | SWS_FT_FI9 |
Number of Residues | 2 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate => ECO:0007744|PubMed:25755297, ECO:0007744|PubMed:28112733 |
Chain | Residue | Details |
L | LYS58 | |
O | LYS249 |
site_id | SWS_FT_FI10 |
Number of Residues | 1 |
Details | MOD_RES: Phosphoserine; by PKB => ECO:0000269|PubMed:16357133, ECO:0007744|PubMed:15144186, ECO:0007744|PubMed:16964243, ECO:0007744|PubMed:17081983, ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:21406692, ECO:0007744|PubMed:23186163 |
Chain | Residue | Details |
U | SER457 | |
k | LYS113 |
site_id | SWS_FT_FI11 |
Number of Residues | 2 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16443603, ECO:0000269|PubMed:16543144 |
Chain | Residue | Details |
k | LYS11 | |
k | LYS48 |
site_id | SWS_FT_FI12 |
Number of Residues | 1 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000305|PubMed:15466860 |
Chain | Residue | Details |
k | LYS27 |
site_id | SWS_FT_FI13 |
Number of Residues | 1 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16543144, ECO:0000269|PubMed:25752573, ECO:0000269|PubMed:25752577, ECO:0000269|PubMed:34239127 |
Chain | Residue | Details |
k | LYS29 |
site_id | SWS_FT_FI14 |
Number of Residues | 1 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:25752577 |
Chain | Residue | Details |
k | LYS33 | |
Z | LYS202 |
site_id | SWS_FT_FI15 |
Number of Residues | 1 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:16543144, ECO:0000269|PubMed:18719106 |
Chain | Residue | Details |
k | LYS63 | |
Z | LYS230 |
site_id | SWS_FT_FI16 |
Number of Residues | 1 |
Details | CROSSLNK: Glycyl lysine isopeptide (Gly-Lys) (interchain with K-? in acceptor proteins) |
Chain | Residue | Details |
k | GLY76 |
site_id | SWS_FT_FI17 |
Number of Residues | 1 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:36638793 |
Chain | Residue | Details |
k | LYS107 |