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9BIA

Cryo-EM structure of NINJ1 K45Q bound to Nb538

Functional Information from GO Data
ChainGOidnamespacecontents
A0001525biological_processangiogenesis
A0001530molecular_functionlipopolysaccharide binding
A0001954biological_processpositive regulation of cell-matrix adhesion
A0002232biological_processleukocyte chemotaxis involved in inflammatory response
A0005576cellular_componentextracellular region
A0005886cellular_componentplasma membrane
A0006954biological_processinflammatory response
A0007155biological_processcell adhesion
A0016020cellular_componentmembrane
A0019835biological_processcytolysis
A0031527cellular_componentfilopodium membrane
A0031640biological_processkilling of cells of another organism
A0034113biological_processheterotypic cell-cell adhesion
A0034145biological_processpositive regulation of toll-like receptor 4 signaling pathway
A0042246biological_processtissue regeneration
A0042692biological_processmuscle cell differentiation
A0045202cellular_componentsynapse
A0045765biological_processregulation of angiogenesis
A0048246biological_processmacrophage chemotaxis
A0050729biological_processpositive regulation of inflammatory response
A0051260biological_processprotein homooligomerization
A0071474biological_processcellular hyperosmotic response
A0097060cellular_componentsynaptic membrane
A0097300biological_processprogrammed necrotic cell death
A0097707biological_processferroptosis
A0098631molecular_functioncell adhesion mediator activity
A0098632molecular_functioncell-cell adhesion mediator activity
A0140912molecular_functionmembrane destabilizing activity
A0141201biological_processpyroptotic cell death
A1905351biological_processpericyte cell migration
A1990384biological_processhyaloid vascular plexus regression
A2001206biological_processpositive regulation of osteoclast development
B0001525biological_processangiogenesis
B0001530molecular_functionlipopolysaccharide binding
B0001954biological_processpositive regulation of cell-matrix adhesion
B0002232biological_processleukocyte chemotaxis involved in inflammatory response
B0005576cellular_componentextracellular region
B0005886cellular_componentplasma membrane
B0006954biological_processinflammatory response
B0007155biological_processcell adhesion
B0016020cellular_componentmembrane
B0019835biological_processcytolysis
B0031527cellular_componentfilopodium membrane
B0031640biological_processkilling of cells of another organism
B0034113biological_processheterotypic cell-cell adhesion
B0034145biological_processpositive regulation of toll-like receptor 4 signaling pathway
B0042246biological_processtissue regeneration
B0042692biological_processmuscle cell differentiation
B0045202cellular_componentsynapse
B0045765biological_processregulation of angiogenesis
B0048246biological_processmacrophage chemotaxis
B0050729biological_processpositive regulation of inflammatory response
B0051260biological_processprotein homooligomerization
B0071474biological_processcellular hyperosmotic response
B0097060cellular_componentsynaptic membrane
B0097300biological_processprogrammed necrotic cell death
B0097707biological_processferroptosis
B0098631molecular_functioncell adhesion mediator activity
B0098632molecular_functioncell-cell adhesion mediator activity
B0140912molecular_functionmembrane destabilizing activity
B0141201biological_processpyroptotic cell death
B1905351biological_processpericyte cell migration
B1990384biological_processhyaloid vascular plexus regression
B2001206biological_processpositive regulation of osteoclast development
C0001525biological_processangiogenesis
C0001530molecular_functionlipopolysaccharide binding
C0001954biological_processpositive regulation of cell-matrix adhesion
C0002232biological_processleukocyte chemotaxis involved in inflammatory response
C0005576cellular_componentextracellular region
C0005886cellular_componentplasma membrane
C0006954biological_processinflammatory response
C0007155biological_processcell adhesion
C0016020cellular_componentmembrane
C0019835biological_processcytolysis
C0031527cellular_componentfilopodium membrane
C0031640biological_processkilling of cells of another organism
C0034113biological_processheterotypic cell-cell adhesion
C0034145biological_processpositive regulation of toll-like receptor 4 signaling pathway
C0042246biological_processtissue regeneration
C0042692biological_processmuscle cell differentiation
C0045202cellular_componentsynapse
C0045765biological_processregulation of angiogenesis
C0048246biological_processmacrophage chemotaxis
C0050729biological_processpositive regulation of inflammatory response
C0051260biological_processprotein homooligomerization
C0071474biological_processcellular hyperosmotic response
C0097060cellular_componentsynaptic membrane
C0097300biological_processprogrammed necrotic cell death
C0097707biological_processferroptosis
C0098631molecular_functioncell adhesion mediator activity
C0098632molecular_functioncell-cell adhesion mediator activity
C0140912molecular_functionmembrane destabilizing activity
C0141201biological_processpyroptotic cell death
C1905351biological_processpericyte cell migration
C1990384biological_processhyaloid vascular plexus regression
C2001206biological_processpositive regulation of osteoclast development
D0001525biological_processangiogenesis
D0001530molecular_functionlipopolysaccharide binding
D0001954biological_processpositive regulation of cell-matrix adhesion
D0002232biological_processleukocyte chemotaxis involved in inflammatory response
D0005576cellular_componentextracellular region
D0005886cellular_componentplasma membrane
D0006954biological_processinflammatory response
D0007155biological_processcell adhesion
D0016020cellular_componentmembrane
D0019835biological_processcytolysis
D0031527cellular_componentfilopodium membrane
D0031640biological_processkilling of cells of another organism
D0034113biological_processheterotypic cell-cell adhesion
D0034145biological_processpositive regulation of toll-like receptor 4 signaling pathway
D0042246biological_processtissue regeneration
D0042692biological_processmuscle cell differentiation
D0045202cellular_componentsynapse
D0045765biological_processregulation of angiogenesis
D0048246biological_processmacrophage chemotaxis
D0050729biological_processpositive regulation of inflammatory response
D0051260biological_processprotein homooligomerization
D0071474biological_processcellular hyperosmotic response
D0097060cellular_componentsynaptic membrane
D0097300biological_processprogrammed necrotic cell death
D0097707biological_processferroptosis
D0098631molecular_functioncell adhesion mediator activity
D0098632molecular_functioncell-cell adhesion mediator activity
D0140912molecular_functionmembrane destabilizing activity
D0141201biological_processpyroptotic cell death
D1905351biological_processpericyte cell migration
D1990384biological_processhyaloid vascular plexus regression
D2001206biological_processpositive regulation of osteoclast development
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues360
DetailsTOPO_DOM: Extracellular => ECO:0000250|UniProtKB:Q92982
ChainResidueDetails
BMET1-VAL78
BPHE139-GLN152
CMET1-VAL78
CPHE139-GLN152
AMET1-VAL78
APHE139-GLN152
DMET1-VAL78
DPHE139-GLN152

site_idSWS_FT_FI2
Number of Residues96
DetailsTRANSMEM: Helical; Name=Helix alpha3 => ECO:0000269|PubMed:39476863, ECO:0007744|PDB:9BIA
ChainResidueDetails
BPRO79-LYS103
CPRO79-LYS103
APRO79-LYS103
DPRO79-LYS103

site_idSWS_FT_FI3
Number of Residues36
DetailsTOPO_DOM: Cytoplasmic => ECO:0000250|UniProtKB:Q92982
ChainResidueDetails
BTYR104-ALA113
CTYR104-ALA113
ATYR104-ALA113
DTYR104-ALA113

site_idSWS_FT_FI4
Number of Residues96
DetailsTRANSMEM: Helical; Name=Helix alpha4 => ECO:0000269|PubMed:39476863, ECO:0007744|PDB:9BIA
ChainResidueDetails
BLYS114-ALA138
CLYS114-ALA138
ALYS114-ALA138
DLYS114-ALA138

site_idSWS_FT_FI5
Number of Residues4
DetailsSITE: Cleavage; by MMP9 => ECO:0000269|PubMed:23142597
ChainResidueDetails
BLEU56
CLEU56
ALEU56
DLEU56

site_idSWS_FT_FI6
Number of Residues4
DetailsMOD_RES: N-acetylmethionine => ECO:0000250|UniProtKB:Q92982
ChainResidueDetails
BMET1
CMET1
AMET1
DMET1

site_idSWS_FT_FI7
Number of Residues8
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P70617
ChainResidueDetails
BSER18
BSER21
CSER18
CSER21
ASER18
ASER21
DSER18
DSER21

site_idSWS_FT_FI8
Number of Residues4
DetailsCARBOHYD: N-linked (GlcNAc...) asparagine => ECO:0000255|PROSITE-ProRule:PRU00498, ECO:0000269|PubMed:28067406
ChainResidueDetails
BASN60
CASN60
AASN60
DASN60

237423

PDB entries from 2025-06-11

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