9B5V
Ubiquitin E1-Ub-E2 tetrahedral transthiolation intermediate mimic (singly Ub-loaded) - Ub(T) class 10 map and model from cluster 1 (ATP/Mg)
This is a non-PDB format compatible entry.
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000287 | molecular_function | magnesium ion binding |
A | 0004839 | molecular_function | ubiquitin activating enzyme activity |
A | 0005515 | molecular_function | protein binding |
A | 0005524 | molecular_function | ATP binding |
A | 0005634 | cellular_component | nucleus |
A | 0005737 | cellular_component | cytoplasm |
A | 0005829 | cellular_component | cytosol |
A | 0006511 | biological_process | ubiquitin-dependent protein catabolic process |
A | 0006974 | biological_process | DNA damage response |
A | 0016567 | biological_process | protein ubiquitination |
A | 0016874 | molecular_function | ligase activity |
A | 0016887 | molecular_function | ATP hydrolysis activity |
C | 0000151 | cellular_component | ubiquitin ligase complex |
C | 0000209 | biological_process | protein polyubiquitination |
C | 0004842 | molecular_function | ubiquitin-protein transferase activity |
C | 0005515 | molecular_function | protein binding |
C | 0005524 | molecular_function | ATP binding |
C | 0005634 | cellular_component | nucleus |
C | 0005737 | cellular_component | cytoplasm |
C | 0005829 | cellular_component | cytosol |
C | 0006511 | biological_process | ubiquitin-dependent protein catabolic process |
C | 0016567 | biological_process | protein ubiquitination |
C | 0016740 | molecular_function | transferase activity |
C | 0031146 | biological_process | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process |
C | 0031625 | molecular_function | ubiquitin protein ligase binding |
C | 0032933 | biological_process | SREBP signaling pathway |
C | 0045842 | biological_process | positive regulation of mitotic metaphase/anaphase transition |
C | 0061631 | molecular_function | ubiquitin conjugating enzyme activity |
Functional Information from PROSITE/UniProt
site_id | PS00183 |
Number of Residues | 16 |
Details | UBC_1 Ubiquitin-conjugating (UBC) active site signature. YHPNInsn.GsICLdiL |
Chain | Residue | Details |
C | TYR74-LEU89 |
site_id | PS00299 |
Number of Residues | 26 |
Details | UBIQUITIN_1 Ubiquitin domain signature. KskIqDkegIPpdqQrLIFaGkqleD |
Chain | Residue | Details |
D | LYS27-ASP52 |
site_id | PS00865 |
Number of Residues | 9 |
Details | UBIQUITIN_ACTIVAT_2 Ubiquitin-activating enzyme active site. PICTLKnFP |
Chain | Residue | Details |
A | PRO591-PRO599 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 4 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) |
Chain | Residue | Details |
D | LYS6 | |
D | LYS11 | |
D | LYS27 | |
D | LYS33 |
site_id | SWS_FT_FI2 |
Number of Residues | 4 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250 |
Chain | Residue | Details |
A | ARG22 | |
D | LYS29 | |
D | LYS48 | |
D | LYS63 | |
A | VAL513 | |
A | ASP537 |
site_id | SWS_FT_FI3 |
Number of Residues | 1 |
Details | BINDING: BINDING => ECO:0000269|PubMed:23416107, ECO:0007744|PDB:4II2 |
Chain | Residue | Details |
A | ARG474 |