8ZC3
SARS-CoV-2 Omicron BA.4 spike trimer (6P) in complex with 3 D1F6 Fabs (1 RBD up)
This is a non-PDB format compatible entry.
Functional Information from PROSITE/UniProt
site_id | PS00290 |
Number of Residues | 7 |
Details | IG_MHC Immunoglobulins and major histocompatibility complex proteins signature. YSCQVTH |
Chain | Residue | Details |
D | TYR202-HIS208 | |
E | TYR208-HIS214 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 3 |
Details | SITE: Cleavage; by host furin => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32142651, ECO:0000269|PubMed:32362314, ECO:0000269|PubMed:32703818, ECO:0000269|PubMed:34159616 |
Chain | Residue | Details |
A | ALA694 | |
B | ALA694 | |
C | ALA694 |
site_id | SWS_FT_FI2 |
Number of Residues | 3 |
Details | SITE: Cleavage; by host TMPRSS2 or CTSL => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32703818, ECO:0000269|PubMed:34159616 |
Chain | Residue | Details |
A | ASN824 | |
B | ASN824 | |
C | ASN824 |
site_id | SWS_FT_FI3 |
Number of Residues | 9 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | ASN20 | |
A | GLY1167 | |
A | GLU1182 | |
B | ASN20 | |
B | GLY1167 | |
B | GLU1182 | |
C | ASN20 | |
C | GLY1167 | |
C | GLU1182 |
site_id | SWS_FT_FI4 |
Number of Residues | 15 |
Details | CARBOHYD: N-linked (GlcNAc...) (hybrid) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | TRP64 | |
B | HIS1083 | |
C | TRP64 | |
C | VAL127 | |
C | ILE726 | |
C | SER810 | |
C | HIS1083 | |
A | VAL127 | |
A | ILE726 | |
A | SER810 | |
A | HIS1083 | |
B | TRP64 | |
B | VAL127 | |
B | ILE726 | |
B | SER810 |
site_id | SWS_FT_FI5 |
Number of Residues | 9 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | PHE79 | |
A | GLU154 | |
A | LEU1203 | |
B | PHE79 | |
B | GLU154 | |
B | LEU1203 | |
C | PHE79 | |
C | GLU154 | |
C | LEU1203 |
site_id | SWS_FT_FI6 |
Number of Residues | 21 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | TYR170 | |
B | CYS336 | |
B | ALA348 | |
B | PRO621 | |
B | CYS662 | |
B | ARG1107 | |
C | TYR170 | |
C | ASP287 | |
C | CYS336 | |
C | ALA348 | |
C | PRO621 | |
A | ASP287 | |
C | CYS662 | |
C | ARG1107 | |
A | CYS336 | |
A | ALA348 | |
A | PRO621 | |
A | CYS662 | |
A | ARG1107 | |
B | TYR170 | |
B | ASP287 |
site_id | SWS_FT_FI7 |
Number of Residues | 6 |
Details | CARBOHYD: N-linked (GlcNAc...) (high mannose) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | GLN239 | |
A | PHE718 | |
B | GLN239 | |
B | PHE718 | |
C | GLN239 | |
C | PHE718 |
site_id | SWS_FT_FI8 |
Number of Residues | 3 |
Details | CARBOHYD: O-linked (GalNAc) threonine; by host => ECO:0000269|PubMed:32363391 |
Chain | Residue | Details |
A | ARG328 | |
B | ARG328 | |
C | ARG328 |
site_id | SWS_FT_FI9 |
Number of Residues | 3 |
Details | CARBOHYD: O-linked (HexNAc...) serine; by host => ECO:0000269|PubMed:32363391 |
Chain | Residue | Details |
A | PRO330 | |
B | PRO330 | |
C | PRO330 |
site_id | SWS_FT_FI10 |
Number of Residues | 3 |
Details | CARBOHYD: N-linked (GlcNAc...) (hybrid) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | VAL608 | |
B | VAL608 | |
C | VAL608 |
site_id | SWS_FT_FI11 |
Number of Residues | 6 |
Details | CARBOHYD: O-linked (GlcNAc...) threonine; by host GALNT1 => ECO:0000269|PubMed:34732583 |
Chain | Residue | Details |
A | ARG685 | |
A | VAL687 | |
B | ARG685 | |
B | VAL687 | |
C | ARG685 | |
C | VAL687 |
site_id | SWS_FT_FI12 |
Number of Residues | 3 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | PRO1143 | |
B | PRO1143 | |
C | PRO1143 |