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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8Y1L

Cryo-EM structure of human N-terminally bound ATG9A-ATG2A-WIPI4 complex

Functional Information from GO Data
ChainGOidnamespacecontents
A0000045biological_processautophagosome assembly
A0000407cellular_componentphagophore assembly site
A0000422biological_processautophagy of mitochondrion
A0000425biological_processpexophagy
A0005515molecular_functionprotein binding
A0005737cellular_componentcytoplasm
A0005829cellular_componentcytosol
A0006914biological_processautophagy
A0008289molecular_functionlipid binding
A0009267biological_processcellular response to starvation
A0019901molecular_functionprotein kinase binding
A0030674molecular_functionprotein-macromolecule adaptor activity
A0032266molecular_functionphosphatidylinositol-3-phosphate binding
A0034045cellular_componentphagophore assembly site membrane
A0034497biological_processprotein localization to phagophore assembly site
A0044804biological_processnucleophagy
A0061723biological_processglycophagy
A0080025molecular_functionphosphatidylinositol-3,5-bisphosphate binding
A1901981molecular_functionphosphatidylinositol phosphate binding
A2000786biological_processpositive regulation of autophagosome assembly
B0000045biological_processautophagosome assembly
B0000407cellular_componentphagophore assembly site
B0000422biological_processautophagy of mitochondrion
B0000425biological_processpexophagy
B0005515molecular_functionprotein binding
B0005789cellular_componentendoplasmic reticulum membrane
B0005811cellular_componentlipid droplet
B0006869biological_processlipid transport
B0006914biological_processautophagy
B0010508biological_processpositive regulation of autophagy
B0032266molecular_functionphosphatidylinositol-3-phosphate binding
B0034045cellular_componentphagophore assembly site membrane
B0034727biological_processpiecemeal microautophagy of the nucleus
B0043495molecular_functionprotein-membrane adaptor activity
B0044232cellular_componentorganelle membrane contact site
B0061709biological_processreticulophagy
B0061723biological_processglycophagy
B0061908cellular_componentphagophore
B0120009biological_processintermembrane lipid transfer
B0120013molecular_functionlipid transfer activity
B2000786biological_processpositive regulation of autophagosome assembly
C0000045biological_processautophagosome assembly
C0000139cellular_componentGolgi membrane
C0000407cellular_componentphagophore assembly site
C0000421cellular_componentautophagosome membrane
C0000423biological_processmitophagy
C0005515molecular_functionprotein binding
C0005737cellular_componentcytoplasm
C0005739cellular_componentmitochondrion
C0005768cellular_componentendosome
C0005770cellular_componentlate endosome
C0005776cellular_componentautophagosome
C0005789cellular_componentendoplasmic reticulum membrane
C0005794cellular_componentGolgi apparatus
C0005802cellular_componenttrans-Golgi network
C0006869biological_processlipid transport
C0006914biological_processautophagy
C0016020cellular_componentmembrane
C0017121biological_processplasma membrane phospholipid scrambling
C0017128molecular_functionphospholipid scramblase activity
C0031410cellular_componentcytoplasmic vesicle
C0031902cellular_componentlate endosome membrane
C0031966cellular_componentmitochondrial membrane
C0034045cellular_componentphagophore assembly site membrane
C0034497biological_processprotein localization to phagophore assembly site
C0034727biological_processpiecemeal microautophagy of the nucleus
C0055037cellular_componentrecycling endosome
C0055038cellular_componentrecycling endosome membrane
C0060349biological_processbone morphogenesis
C0061709biological_processreticulophagy
C0097060cellular_componentsynaptic membrane
C0097300biological_processprogrammed necrotic cell death
D0000045biological_processautophagosome assembly
D0000139cellular_componentGolgi membrane
D0000407cellular_componentphagophore assembly site
D0000421cellular_componentautophagosome membrane
D0000423biological_processmitophagy
D0005515molecular_functionprotein binding
D0005737cellular_componentcytoplasm
D0005739cellular_componentmitochondrion
D0005768cellular_componentendosome
D0005770cellular_componentlate endosome
D0005776cellular_componentautophagosome
D0005789cellular_componentendoplasmic reticulum membrane
D0005794cellular_componentGolgi apparatus
D0005802cellular_componenttrans-Golgi network
D0006869biological_processlipid transport
D0006914biological_processautophagy
D0016020cellular_componentmembrane
D0017121biological_processplasma membrane phospholipid scrambling
D0017128molecular_functionphospholipid scramblase activity
D0031410cellular_componentcytoplasmic vesicle
D0031902cellular_componentlate endosome membrane
D0031966cellular_componentmitochondrial membrane
D0034045cellular_componentphagophore assembly site membrane
D0034497biological_processprotein localization to phagophore assembly site
D0034727biological_processpiecemeal microautophagy of the nucleus
D0055037cellular_componentrecycling endosome
D0055038cellular_componentrecycling endosome membrane
D0060349biological_processbone morphogenesis
D0061709biological_processreticulophagy
D0097060cellular_componentsynaptic membrane
D0097300biological_processprogrammed necrotic cell death
E0000045biological_processautophagosome assembly
E0000139cellular_componentGolgi membrane
E0000407cellular_componentphagophore assembly site
E0000421cellular_componentautophagosome membrane
E0000423biological_processmitophagy
E0005515molecular_functionprotein binding
E0005737cellular_componentcytoplasm
E0005739cellular_componentmitochondrion
E0005768cellular_componentendosome
E0005770cellular_componentlate endosome
E0005776cellular_componentautophagosome
E0005789cellular_componentendoplasmic reticulum membrane
E0005794cellular_componentGolgi apparatus
E0005802cellular_componenttrans-Golgi network
E0006869biological_processlipid transport
E0006914biological_processautophagy
E0016020cellular_componentmembrane
E0017121biological_processplasma membrane phospholipid scrambling
E0017128molecular_functionphospholipid scramblase activity
E0031410cellular_componentcytoplasmic vesicle
E0031902cellular_componentlate endosome membrane
E0031966cellular_componentmitochondrial membrane
E0034045cellular_componentphagophore assembly site membrane
E0034497biological_processprotein localization to phagophore assembly site
E0034727biological_processpiecemeal microautophagy of the nucleus
E0055037cellular_componentrecycling endosome
E0055038cellular_componentrecycling endosome membrane
E0060349biological_processbone morphogenesis
E0061709biological_processreticulophagy
E0097060cellular_componentsynaptic membrane
E0097300biological_processprogrammed necrotic cell death
Functional Information from PROSITE/UniProt
site_idPS00059
Number of Residues15
DetailsADH_ZINC Zinc-containing alcohol dehydrogenases signature. GHEqKGLtgavGgvI
ChainResidueDetails
BGLY1876-ILE1890
site_idPS00862
Number of Residues34
DetailsOX2_COVAL_FAD Oxygen oxidoreductases covalent FAD-binding site. PpvetaliNqrDLadaLldterslre...LaqpSGGH
ChainResidueDetails
BPRO1271-HIS1304
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues267
DetailsTransmembrane: {"description":"Helical","evidences":[{"source":"PubMed","id":"32610138","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"33106659","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6WQZ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6WR4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7JLO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7JLP","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7JLQ","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI2
Number of Residues723
DetailsTopological domain: {"description":"Cytoplasmic","evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails
site_idSWS_FT_FI3
Number of Residues30
DetailsIntramembrane: {"evidences":[{"source":"PubMed","id":"32610138","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"33106659","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6WQZ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6WR4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7JLP","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7JLQ","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI4
Number of Residues24
DetailsIntramembrane: {"evidences":[{"source":"PubMed","id":"32610138","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"33106659","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6WQZ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6WR4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7JLO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7JLP","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7JLQ","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI5
Number of Residues24
DetailsTopological domain: {"description":"Lumenal","evidences":[{"evidenceCode":"ECO:0000305"}]}
ChainResidueDetails
site_idSWS_FT_FI6
Number of Residues27
DetailsIntramembrane: {"evidences":[{"source":"PubMed","id":"32610138","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6WQZ","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI7
Number of Residues24
DetailsIntramembrane: {"evidences":[{"source":"PubMed","id":"32610138","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"33106659","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6WQZ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"7JLP","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails
site_idSWS_FT_FI8
Number of Residues33
DetailsRepeat: {"description":"WD 1"}
ChainResidueDetails
site_idSWS_FT_FI9
Number of Residues44
DetailsRepeat: {"description":"WD 2"}
ChainResidueDetails
site_idSWS_FT_FI10
Number of Residues36
DetailsRepeat: {"description":"WD 3"}
ChainResidueDetails
site_idSWS_FT_FI11
Number of Residues41
DetailsRepeat: {"description":"WD 4"}
ChainResidueDetails
site_idSWS_FT_FI12
Number of Residues39
DetailsRepeat: {"description":"WD 5"}
ChainResidueDetails
site_idSWS_FT_FI13
Number of Residues39
DetailsRepeat: {"description":"WD 6"}
ChainResidueDetails
site_idSWS_FT_FI14
Number of Residues45
DetailsRepeat: {"description":"WD 7"}
ChainResidueDetails
site_idSWS_FT_FI15
Number of Residues3
DetailsMotif: {"description":"L/FRRG motif","evidences":[{"source":"UniProtKB","id":"Q9Y4P8","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

248335

PDB entries from 2026-01-28

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