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8XBY

The cryo-EM structure of the RAD51 L1 and L2 loops bound to the linker DNA with the blunt end of the nucleosome

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
K0000150molecular_functionDNA strand exchange activity
K0000152cellular_componentnuclear ubiquitin ligase complex
K0000166molecular_functionnucleotide binding
K0000228cellular_componentnuclear chromosome
K0000722biological_processtelomere maintenance via recombination
K0000724biological_processdouble-strand break repair via homologous recombination
K0000730biological_processDNA recombinase assembly
K0000781cellular_componentchromosome, telomeric region
K0000785cellular_componentchromatin
K0000793cellular_componentcondensed chromosome
K0000794cellular_componentcondensed nuclear chromosome
K0000800cellular_componentlateral element
K0001673cellular_componentmale germ cell nucleus
K0003677molecular_functionDNA binding
K0003682molecular_functionchromatin binding
K0003690molecular_functiondouble-stranded DNA binding
K0003697molecular_functionsingle-stranded DNA binding
K0005515molecular_functionprotein binding
K0005524molecular_functionATP binding
K0005634cellular_componentnucleus
K0005654cellular_componentnucleoplasm
K0005694cellular_componentchromosome
K0005730cellular_componentnucleolus
K0005737cellular_componentcytoplasm
K0005739cellular_componentmitochondrion
K0005759cellular_componentmitochondrial matrix
K0005813cellular_componentcentrosome
K0005829cellular_componentcytosol
K0006259biological_processDNA metabolic process
K0006281biological_processDNA repair
K0006310biological_processDNA recombination
K0006312biological_processmitotic recombination
K0006974biological_processDNA damage response
K0007127biological_processmeiosis I
K0007131biological_processreciprocal meiotic recombination
K0008094molecular_functionATP-dependent activity, acting on DNA
K0009410biological_processresponse to xenobiotic stimulus
K0009636biological_processresponse to toxic substance
K0010165biological_processresponse to X-ray
K0010569biological_processregulation of double-strand break repair via homologous recombination
K0010833biological_processtelomere maintenance via telomere lengthening
K0016605cellular_componentPML body
K0017116molecular_functionsingle-stranded DNA helicase activity
K0019899molecular_functionenzyme binding
K0031297biological_processreplication fork processing
K0032200biological_processtelomere organization
K0032991cellular_componentprotein-containing complex
K0032993cellular_componentprotein-DNA complex
K0035861cellular_componentsite of double-strand break
K0036297biological_processinterstrand cross-link repair
K0042148biological_processDNA strand invasion
K0042802molecular_functionidentical protein binding
K0048471cellular_componentperinuclear region of cytoplasm
K0051321biological_processmeiotic cell cycle
K0070182molecular_functionDNA polymerase binding
K0070192biological_processchromosome organization involved in meiotic cell cycle
K0071312biological_processcellular response to alkaloid
K0071479biological_processcellular response to ionizing radiation
K0071480biological_processcellular response to gamma radiation
K0072711biological_processcellular response to hydroxyurea
K0072719biological_processcellular response to cisplatin
K0072757biological_processcellular response to camptothecin
K0099182cellular_componentpresynaptic intermediate filament cytoskeleton
K0140664molecular_functionATP-dependent DNA damage sensor activity
K1904631biological_processresponse to glucoside
K1990414biological_processreplication-born double-strand break repair via sister chromatid exchange
K1990426biological_processmitotic recombination-dependent replication fork processing
K1990918biological_processdouble-strand break repair involved in meiotic recombination
K2000001biological_processregulation of DNA damage checkpoint
L0000150molecular_functionDNA strand exchange activity
L0000152cellular_componentnuclear ubiquitin ligase complex
L0000166molecular_functionnucleotide binding
L0000228cellular_componentnuclear chromosome
L0000722biological_processtelomere maintenance via recombination
L0000724biological_processdouble-strand break repair via homologous recombination
L0000730biological_processDNA recombinase assembly
L0000781cellular_componentchromosome, telomeric region
L0000785cellular_componentchromatin
L0000793cellular_componentcondensed chromosome
L0000794cellular_componentcondensed nuclear chromosome
L0000800cellular_componentlateral element
L0001673cellular_componentmale germ cell nucleus
L0003677molecular_functionDNA binding
L0003682molecular_functionchromatin binding
L0003690molecular_functiondouble-stranded DNA binding
L0003697molecular_functionsingle-stranded DNA binding
L0005515molecular_functionprotein binding
L0005524molecular_functionATP binding
L0005634cellular_componentnucleus
L0005654cellular_componentnucleoplasm
L0005694cellular_componentchromosome
L0005730cellular_componentnucleolus
L0005737cellular_componentcytoplasm
L0005739cellular_componentmitochondrion
L0005759cellular_componentmitochondrial matrix
L0005813cellular_componentcentrosome
L0005829cellular_componentcytosol
L0006259biological_processDNA metabolic process
L0006281biological_processDNA repair
L0006310biological_processDNA recombination
L0006312biological_processmitotic recombination
L0006974biological_processDNA damage response
L0007127biological_processmeiosis I
L0007131biological_processreciprocal meiotic recombination
L0008094molecular_functionATP-dependent activity, acting on DNA
L0009410biological_processresponse to xenobiotic stimulus
L0009636biological_processresponse to toxic substance
L0010165biological_processresponse to X-ray
L0010569biological_processregulation of double-strand break repair via homologous recombination
L0010833biological_processtelomere maintenance via telomere lengthening
L0016605cellular_componentPML body
L0017116molecular_functionsingle-stranded DNA helicase activity
L0019899molecular_functionenzyme binding
L0031297biological_processreplication fork processing
L0032200biological_processtelomere organization
L0032991cellular_componentprotein-containing complex
L0032993cellular_componentprotein-DNA complex
L0035861cellular_componentsite of double-strand break
L0036297biological_processinterstrand cross-link repair
L0042148biological_processDNA strand invasion
L0042802molecular_functionidentical protein binding
L0048471cellular_componentperinuclear region of cytoplasm
L0051321biological_processmeiotic cell cycle
L0070182molecular_functionDNA polymerase binding
L0070192biological_processchromosome organization involved in meiotic cell cycle
L0071312biological_processcellular response to alkaloid
L0071479biological_processcellular response to ionizing radiation
L0071480biological_processcellular response to gamma radiation
L0072711biological_processcellular response to hydroxyurea
L0072719biological_processcellular response to cisplatin
L0072757biological_processcellular response to camptothecin
L0099182cellular_componentpresynaptic intermediate filament cytoskeleton
L0140664molecular_functionATP-dependent DNA damage sensor activity
L1904631biological_processresponse to glucoside
L1990414biological_processreplication-born double-strand break repair via sister chromatid exchange
L1990426biological_processmitotic recombination-dependent replication fork processing
L1990918biological_processdouble-strand break repair involved in meiotic recombination
L2000001biological_processregulation of DNA damage checkpoint
M0000150molecular_functionDNA strand exchange activity
M0000152cellular_componentnuclear ubiquitin ligase complex
M0000166molecular_functionnucleotide binding
M0000228cellular_componentnuclear chromosome
M0000722biological_processtelomere maintenance via recombination
M0000724biological_processdouble-strand break repair via homologous recombination
M0000730biological_processDNA recombinase assembly
M0000781cellular_componentchromosome, telomeric region
M0000785cellular_componentchromatin
M0000793cellular_componentcondensed chromosome
M0000794cellular_componentcondensed nuclear chromosome
M0000800cellular_componentlateral element
M0001673cellular_componentmale germ cell nucleus
M0003677molecular_functionDNA binding
M0003682molecular_functionchromatin binding
M0003690molecular_functiondouble-stranded DNA binding
M0003697molecular_functionsingle-stranded DNA binding
M0005515molecular_functionprotein binding
M0005524molecular_functionATP binding
M0005634cellular_componentnucleus
M0005654cellular_componentnucleoplasm
M0005694cellular_componentchromosome
M0005730cellular_componentnucleolus
M0005737cellular_componentcytoplasm
M0005739cellular_componentmitochondrion
M0005759cellular_componentmitochondrial matrix
M0005813cellular_componentcentrosome
M0005829cellular_componentcytosol
M0006259biological_processDNA metabolic process
M0006281biological_processDNA repair
M0006310biological_processDNA recombination
M0006312biological_processmitotic recombination
M0006974biological_processDNA damage response
M0007127biological_processmeiosis I
M0007131biological_processreciprocal meiotic recombination
M0008094molecular_functionATP-dependent activity, acting on DNA
M0009410biological_processresponse to xenobiotic stimulus
M0009636biological_processresponse to toxic substance
M0010165biological_processresponse to X-ray
M0010569biological_processregulation of double-strand break repair via homologous recombination
M0010833biological_processtelomere maintenance via telomere lengthening
M0016605cellular_componentPML body
M0017116molecular_functionsingle-stranded DNA helicase activity
M0019899molecular_functionenzyme binding
M0031297biological_processreplication fork processing
M0032200biological_processtelomere organization
M0032991cellular_componentprotein-containing complex
M0032993cellular_componentprotein-DNA complex
M0035861cellular_componentsite of double-strand break
M0036297biological_processinterstrand cross-link repair
M0042148biological_processDNA strand invasion
M0042802molecular_functionidentical protein binding
M0048471cellular_componentperinuclear region of cytoplasm
M0051321biological_processmeiotic cell cycle
M0070182molecular_functionDNA polymerase binding
M0070192biological_processchromosome organization involved in meiotic cell cycle
M0071312biological_processcellular response to alkaloid
M0071479biological_processcellular response to ionizing radiation
M0071480biological_processcellular response to gamma radiation
M0072711biological_processcellular response to hydroxyurea
M0072719biological_processcellular response to cisplatin
M0072757biological_processcellular response to camptothecin
M0099182cellular_componentpresynaptic intermediate filament cytoskeleton
M0140664molecular_functionATP-dependent DNA damage sensor activity
M1904631biological_processresponse to glucoside
M1990414biological_processreplication-born double-strand break repair via sister chromatid exchange
M1990426biological_processmitotic recombination-dependent replication fork processing
M1990918biological_processdouble-strand break repair involved in meiotic recombination
M2000001biological_processregulation of DNA damage checkpoint
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues219
DetailsRegion: {"description":"Interaction with PALB2"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues45
DetailsMotif: {"description":"Nuclear export signal; masked by the interaction with BRCA2","evidences":[{"source":"PubMed","id":"24013206","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues21
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues3
DetailsModified residue: {"description":"Phosphothreonine; by CHEK1","evidences":[{"source":"PubMed","id":"15665856","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

243531

PDB entries from 2025-10-22

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