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8WPZ

Cryo-ET structure of RuBisCO at 3.9 angstroms from Synechococcus elongatus PCC 7942

Functional Information from GO Data
ChainGOidnamespacecontents
A0009853biological_processphotorespiration
A0015977biological_processcarbon fixation
A0015979biological_processphotosynthesis
A0016984molecular_functionribulose-bisphosphate carboxylase activity
A0019253biological_processreductive pentose-phosphate cycle
A0031470cellular_componentcarboxysome
B0009853biological_processphotorespiration
B0015977biological_processcarbon fixation
B0015979biological_processphotosynthesis
B0016984molecular_functionribulose-bisphosphate carboxylase activity
B0019253biological_processreductive pentose-phosphate cycle
B0031470cellular_componentcarboxysome
C0000287molecular_functionmagnesium ion binding
C0004497molecular_functionmonooxygenase activity
C0009853biological_processphotorespiration
C0015977biological_processcarbon fixation
C0015979biological_processphotosynthesis
C0016829molecular_functionlyase activity
C0016984molecular_functionribulose-bisphosphate carboxylase activity
C0019253biological_processreductive pentose-phosphate cycle
C0031470cellular_componentcarboxysome
C0046872molecular_functionmetal ion binding
D0000287molecular_functionmagnesium ion binding
D0004497molecular_functionmonooxygenase activity
D0009853biological_processphotorespiration
D0015977biological_processcarbon fixation
D0015979biological_processphotosynthesis
D0016829molecular_functionlyase activity
D0016984molecular_functionribulose-bisphosphate carboxylase activity
D0019253biological_processreductive pentose-phosphate cycle
D0031470cellular_componentcarboxysome
D0046872molecular_functionmetal ion binding
E0009853biological_processphotorespiration
E0015977biological_processcarbon fixation
E0015979biological_processphotosynthesis
E0016984molecular_functionribulose-bisphosphate carboxylase activity
E0019253biological_processreductive pentose-phosphate cycle
E0031470cellular_componentcarboxysome
F0009853biological_processphotorespiration
F0015977biological_processcarbon fixation
F0015979biological_processphotosynthesis
F0016984molecular_functionribulose-bisphosphate carboxylase activity
F0019253biological_processreductive pentose-phosphate cycle
F0031470cellular_componentcarboxysome
G0000287molecular_functionmagnesium ion binding
G0004497molecular_functionmonooxygenase activity
G0009853biological_processphotorespiration
G0015977biological_processcarbon fixation
G0015979biological_processphotosynthesis
G0016829molecular_functionlyase activity
G0016984molecular_functionribulose-bisphosphate carboxylase activity
G0019253biological_processreductive pentose-phosphate cycle
G0031470cellular_componentcarboxysome
G0046872molecular_functionmetal ion binding
H0000287molecular_functionmagnesium ion binding
H0004497molecular_functionmonooxygenase activity
H0009853biological_processphotorespiration
H0015977biological_processcarbon fixation
H0015979biological_processphotosynthesis
H0016829molecular_functionlyase activity
H0016984molecular_functionribulose-bisphosphate carboxylase activity
H0019253biological_processreductive pentose-phosphate cycle
H0031470cellular_componentcarboxysome
H0046872molecular_functionmetal ion binding
I0009853biological_processphotorespiration
I0015977biological_processcarbon fixation
I0015979biological_processphotosynthesis
I0016984molecular_functionribulose-bisphosphate carboxylase activity
I0019253biological_processreductive pentose-phosphate cycle
I0031470cellular_componentcarboxysome
J0000287molecular_functionmagnesium ion binding
J0004497molecular_functionmonooxygenase activity
J0009853biological_processphotorespiration
J0015977biological_processcarbon fixation
J0015979biological_processphotosynthesis
J0016829molecular_functionlyase activity
J0016984molecular_functionribulose-bisphosphate carboxylase activity
J0019253biological_processreductive pentose-phosphate cycle
J0031470cellular_componentcarboxysome
J0046872molecular_functionmetal ion binding
K0000287molecular_functionmagnesium ion binding
K0004497molecular_functionmonooxygenase activity
K0009853biological_processphotorespiration
K0015977biological_processcarbon fixation
K0015979biological_processphotosynthesis
K0016829molecular_functionlyase activity
K0016984molecular_functionribulose-bisphosphate carboxylase activity
K0019253biological_processreductive pentose-phosphate cycle
K0031470cellular_componentcarboxysome
K0046872molecular_functionmetal ion binding
L0009853biological_processphotorespiration
L0015977biological_processcarbon fixation
L0015979biological_processphotosynthesis
L0016984molecular_functionribulose-bisphosphate carboxylase activity
L0019253biological_processreductive pentose-phosphate cycle
L0031470cellular_componentcarboxysome
M0009853biological_processphotorespiration
M0015977biological_processcarbon fixation
M0015979biological_processphotosynthesis
M0016984molecular_functionribulose-bisphosphate carboxylase activity
M0019253biological_processreductive pentose-phosphate cycle
M0031470cellular_componentcarboxysome
N0000287molecular_functionmagnesium ion binding
N0004497molecular_functionmonooxygenase activity
N0009853biological_processphotorespiration
N0015977biological_processcarbon fixation
N0015979biological_processphotosynthesis
N0016829molecular_functionlyase activity
N0016984molecular_functionribulose-bisphosphate carboxylase activity
N0019253biological_processreductive pentose-phosphate cycle
N0031470cellular_componentcarboxysome
N0046872molecular_functionmetal ion binding
O0000287molecular_functionmagnesium ion binding
O0004497molecular_functionmonooxygenase activity
O0009853biological_processphotorespiration
O0015977biological_processcarbon fixation
O0015979biological_processphotosynthesis
O0016829molecular_functionlyase activity
O0016984molecular_functionribulose-bisphosphate carboxylase activity
O0019253biological_processreductive pentose-phosphate cycle
O0031470cellular_componentcarboxysome
O0046872molecular_functionmetal ion binding
P0009853biological_processphotorespiration
P0015977biological_processcarbon fixation
P0015979biological_processphotosynthesis
P0016984molecular_functionribulose-bisphosphate carboxylase activity
P0019253biological_processreductive pentose-phosphate cycle
P0031470cellular_componentcarboxysome
Functional Information from PROSITE/UniProt
site_idPS00157
Number of Residues9
DetailsRUBISCO_LARGE Ribulose bisphosphate carboxylase large chain active site. GlDFtKdDE
ChainResidueDetails
CGLY193-GLU201

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues16
DetailsACT_SITE: Proton acceptor => ECO:0000255|HAMAP-Rule:MF_01338
ChainResidueDetails
CLYS172
JHIS291
KLYS172
KHIS291
NLYS172
NHIS291
OLYS172
OHIS291
CHIS291
DLYS172
DHIS291
GLYS172
GHIS291
HLYS172
HHIS291
JLYS172

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: in homodimeric partner => ECO:0000255|HAMAP-Rule:MF_01338
ChainResidueDetails
CASN120
DASN120
GASN120
HASN120
JASN120
KASN120
NASN120
OASN120

site_idSWS_FT_FI3
Number of Residues56
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01338
ChainResidueDetails
CTHR170
DASP200
DGLU201
DARG292
DHIS324
DSER376
GTHR170
GLYS174
GASP200
GGLU201
GARG292
CLYS174
GHIS324
GSER376
HTHR170
HLYS174
HASP200
HGLU201
HARG292
HHIS324
HSER376
JTHR170
CASP200
JLYS174
JASP200
JGLU201
JARG292
JHIS324
JSER376
KTHR170
KLYS174
KASP200
KGLU201
CGLU201
KARG292
KHIS324
KSER376
NTHR170
NLYS174
NASP200
NGLU201
NARG292
NHIS324
NSER376
CARG292
OTHR170
OLYS174
OASP200
OGLU201
OARG292
OHIS324
OSER376
CHIS324
CSER376
DTHR170
DLYS174

site_idSWS_FT_FI4
Number of Residues8
DetailsBINDING: via carbamate group => ECO:0000255|HAMAP-Rule:MF_01338
ChainResidueDetails
CLYS198
DLYS198
GLYS198
HLYS198
JLYS198
KLYS198
NLYS198
OLYS198

site_idSWS_FT_FI5
Number of Residues8
DetailsSITE: Transition state stabilizer => ECO:0000255|HAMAP-Rule:MF_01338
ChainResidueDetails
CLYS331
DLYS331
GLYS331
HLYS331
JLYS331
KLYS331
NLYS331
OLYS331

site_idSWS_FT_FI6
Number of Residues8
DetailsMOD_RES: N6-carboxylysine => ECO:0000255|HAMAP-Rule:MF_01338
ChainResidueDetails
CLYS198
DLYS198
GLYS198
HLYS198
JLYS198
KLYS198
NLYS198
OLYS198

224004

PDB entries from 2024-08-21

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