Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

8WA0

The cryo-EM structure of the Nicotiana tabacum PEP-PAP-TEC1

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
a	0000428	cellular_component	DNA-directed RNA polymerase complex
a	0003677	molecular_function	DNA binding
a	0003899	molecular_function	DNA-directed RNA polymerase activity
a	0005737	cellular_component	cytoplasm
a	0006351	biological_process	DNA-templated transcription
a	0009507	cellular_component	chloroplast
a	0016740	molecular_function	transferase activity
a	0016779	molecular_function	nucleotidyltransferase activity
a	0034062	molecular_function	5'-3' RNA polymerase activity
a	0046983	molecular_function	protein dimerization activity
A	0000428	cellular_component	DNA-directed RNA polymerase complex
A	0003677	molecular_function	DNA binding
A	0003899	molecular_function	DNA-directed RNA polymerase activity
A	0005737	cellular_component	cytoplasm
A	0006351	biological_process	DNA-templated transcription
A	0009507	cellular_component	chloroplast
A	0016740	molecular_function	transferase activity
A	0016779	molecular_function	nucleotidyltransferase activity
A	0034062	molecular_function	5'-3' RNA polymerase activity
A	0046983	molecular_function	protein dimerization activity
B	0000428	cellular_component	DNA-directed RNA polymerase complex
B	0003677	molecular_function	DNA binding
B	0003899	molecular_function	DNA-directed RNA polymerase activity
B	0006351	biological_process	DNA-templated transcription
B	0009507	cellular_component	chloroplast
B	0016740	molecular_function	transferase activity
B	0016779	molecular_function	nucleotidyltransferase activity
B	0032549	molecular_function	ribonucleoside binding
B	0034062	molecular_function	5'-3' RNA polymerase activity
c	0000428	cellular_component	DNA-directed RNA polymerase complex
c	0003677	molecular_function	DNA binding
c	0003899	molecular_function	DNA-directed RNA polymerase activity
c	0006351	biological_process	DNA-templated transcription
c	0008270	molecular_function	zinc ion binding
c	0009507	cellular_component	chloroplast
c	0016740	molecular_function	transferase activity
c	0016779	molecular_function	nucleotidyltransferase activity
c	0034062	molecular_function	5'-3' RNA polymerase activity
c	0046872	molecular_function	metal ion binding
C	0000287	molecular_function	magnesium ion binding
C	0000428	cellular_component	DNA-directed RNA polymerase complex
C	0003677	molecular_function	DNA binding
C	0003899	molecular_function	DNA-directed RNA polymerase activity
C	0006351	biological_process	DNA-templated transcription
C	0008270	molecular_function	zinc ion binding
C	0016740	molecular_function	transferase activity
C	0016779	molecular_function	nucleotidyltransferase activity
C	0046872	molecular_function	metal ion binding
E	0009507	cellular_component	chloroplast
E	0042793	biological_process	plastid transcription
F	0000427	cellular_component	plastid-encoded plastid RNA polymerase complex
F	0003676	molecular_function	nucleic acid binding
F	0003723	molecular_function	RNA binding
F	0009507	cellular_component	chloroplast
G	0004784	molecular_function	superoxide dismutase activity
G	0006801	biological_process	superoxide metabolic process
G	0006950	biological_process	response to stress
G	0009507	cellular_component	chloroplast
G	0016491	molecular_function	oxidoreductase activity
G	0019430	biological_process	removal of superoxide radicals
G	0042644	cellular_component	chloroplast nucleoid
G	0046872	molecular_function	metal ion binding
H	0005634	cellular_component	nucleus
H	0006355	biological_process	regulation of DNA-templated transcription
H	0009416	biological_process	response to light stimulus
H	0009507	cellular_component	chloroplast
H	0042793	biological_process	plastid transcription
H	0045893	biological_process	positive regulation of DNA-templated transcription
H	0090228	biological_process	positive regulation of red or far-red light signaling pathway
i	0009507	cellular_component	chloroplast
i	0009658	biological_process	chloroplast organization
i	0009662	biological_process	etioplast organization
i	0016301	molecular_function	kinase activity
i	0016740	molecular_function	transferase activity
i	0042644	cellular_component	chloroplast nucleoid
i	0042793	biological_process	plastid transcription
I	0009507	cellular_component	chloroplast
I	0009658	biological_process	chloroplast organization
I	0016301	molecular_function	kinase activity
I	0016740	molecular_function	transferase activity
I	0042644	cellular_component	chloroplast nucleoid
I	0042793	biological_process	plastid transcription
J	0000427	cellular_component	plastid-encoded plastid RNA polymerase complex
J	0008168	molecular_function	methyltransferase activity
J	0009534	cellular_component	chloroplast thylakoid
J	0009658	biological_process	chloroplast organization
J	0010027	biological_process	thylakoid membrane organization
J	0016279	molecular_function	protein-lysine N-methyltransferase activity
J	0016740	molecular_function	transferase activity
J	0032259	biological_process	methylation
J	0042793	biological_process	plastid transcription
K	0000427	cellular_component	plastid-encoded plastid RNA polymerase complex
L	0004784	molecular_function	superoxide dismutase activity
L	0006801	biological_process	superoxide metabolic process
L	0009416	biological_process	response to light stimulus
L	0009507	cellular_component	chloroplast
L	0016491	molecular_function	oxidoreductase activity
L	0019430	biological_process	removal of superoxide radicals
L	0042644	cellular_component	chloroplast nucleoid
L	0046872	molecular_function	metal ion binding
m	0009507	cellular_component	chloroplast
m	0009579	cellular_component	thylakoid
m	0009657	biological_process	plastid organization
m	0015035	molecular_function	protein-disulfide reductase activity
m	0015036	molecular_function	disulfide oxidoreductase activity
m	0016491	molecular_function	oxidoreductase activity
m	0045454	biological_process	cell redox homeostasis
M	0009507	cellular_component	chloroplast
M	0009579	cellular_component	thylakoid
M	0009657	biological_process	plastid organization
M	0015035	molecular_function	protein-disulfide reductase activity
M	0015036	molecular_function	disulfide oxidoreductase activity
M	0016491	molecular_function	oxidoreductase activity
M	0045454	biological_process	cell redox homeostasis
N	0005524	molecular_function	ATP binding
N	0005737	cellular_component	cytoplasm
N	0008360	biological_process	regulation of cell shape
N	0009058	biological_process	biosynthetic process
N	0009507	cellular_component	chloroplast
N	0009658	biological_process	chloroplast organization
N	0016874	molecular_function	ligase activity
N	0016881	molecular_function	acid-amino acid ligase activity
N	0051301	biological_process	cell division
O	0000427	cellular_component	plastid-encoded plastid RNA polymerase complex
O	0042793	biological_process	plastid transcription

Functional Information from PROSITE/UniProt

site_id	PS00088
Number of Residues	8
Details	SOD_MN Manganese and iron superoxide dismutases signature. DvWEHAYY

Chain	Residue	Details
L	ASP224-TYR231
G	ASP214-TYR221

site_id	PS00563
Number of Residues	10
Details	STATHMIN_1 Stathmin family signature 1. PKKKDmSLEE

Chain	Residue	Details
H	PRO503-GLU512

site_id	PS00583
Number of Residues	25
Details	PFKB_KINASES_1 pfkB family of carbohydrate kinases signature 1. GGpPsNVAisHvRLGgraafmgkvG

Chain	Residue	Details
I	GLY163-GLY187

site_id	PS01166
Number of Residues	13
Details	RNA_POL_BETA RNA polymerases beta chain signature. GdKVAGrHGNKGI

Chain	Residue	Details
B	GLY817-ILE829

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	223
Details	Region: {"description":"Alpha N-terminal domain (alpha-NTD)","evidences":[{"source":"HAMAP-Rule","id":"MF_00059","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI2
Number of Residues	72
Details	Region: {"description":"Alpha C-terminal domain (alpha-CTD)","evidences":[{"source":"HAMAP-Rule","id":"MF_00059","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

site_id	SWS_FT_FI5
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01324","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		Validation report (PDF)