8VOS
Escherichia coli transcription-translation loosely coupled complex (TTC-LC) containing mRNA with a 60 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site
This is a non-PDB format compatible entry.
Functional Information from PROSITE/UniProt
site_id | PS00049 |
Number of Residues | 27 |
Details | RIBOSOMAL_L14 Ribosomal protein L14 signature. AVVVrtkkgvrrp.DGsvirFdgNacVL |
Chain | Residue | Details |
t | ALA60-LEU86 |
site_id | PS00050 |
Number of Residues | 16 |
Details | RIBOSOMAL_L23 Ribosomal protein L23 signature. KKAYVTLKegqnldfV |
Chain | Residue | Details |
2 | LYS81-VAL96 |
site_id | PS00052 |
Number of Residues | 27 |
Details | RIBOSOMAL_S7 Ribosomal protein S7 signature. SeLlakFVnilmvdGKKstaesIVysA |
Chain | Residue | Details |
M | SER20-ALA46 |
site_id | PS00053 |
Number of Residues | 18 |
Details | RIBOSOMAL_S8 Ribosomal protein S8 signature. GiaVVSTSkGVMtdraAR |
Chain | Residue | Details |
N | GLY100-ARG117 |
site_id | PS00054 |
Number of Residues | 23 |
Details | RIBOSOMAL_S11 Ribosomal protein S11 signature. IrALnaA.GFrItnitDvTPiPHN |
Chain | Residue | Details |
Q | ILE97-ASN119 |
site_id | PS00055 |
Number of Residues | 8 |
Details | RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR |
Chain | Residue | Details |
R | LYS43-ARG50 |
site_id | PS00056 |
Number of Residues | 13 |
Details | RIBOSOMAL_S17 Ribosomal protein S17 signature. GDvVeIrEcRPLS |
Chain | Residue | Details |
V | GLY56-SER68 |
site_id | PS00057 |
Number of Residues | 24 |
Details | RIBOSOMAL_S18 Ribosomal protein S18 signature. IDYkd.IatLknYITEs.GKIvpsRI |
Chain | Residue | Details |
C | ILE21-ILE44 |
site_id | PS00061 |
Number of Residues | 29 |
Details | ADH_SHORT Short-chain dehydrogenases/reductases family signature. PdhkhavialTsiYGVGKTRSkAILaAAG |
Chain | Residue | Details |
X | PRO10-GLY38 |
site_id | PS00323 |
Number of Residues | 25 |
Details | RIBOSOMAL_S19 Ribosomal protein S19 signature. NGRqhvpvfVtdemVGhkLGEFapT |
Chain | Residue | Details |
W | ASN53-THR77 |
site_id | PS00358 |
Number of Residues | 17 |
Details | RIBOSOMAL_L5 Ribosomal protein L5 signature. LaaISGQkpLiTkARkS |
Chain | Residue | Details |
n | LEU57-SER73 |
site_id | PS00359 |
Number of Residues | 16 |
Details | RIBOSOMAL_L11 Ribosomal protein L11 signature. RsIeGTarSMGlVVeD |
Chain | Residue | Details |
Y | ARG126-ASP141 |
site_id | PS00360 |
Number of Residues | 19 |
Details | RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGisGQagAirhGiTRAL |
Chain | Residue | Details |
O | GLY69-LEU87 |
site_id | PS00361 |
Number of Residues | 16 |
Details | RIBOSOMAL_S10 Ribosomal protein S10 signature. AkrtGAqvrGPIpLPT |
Chain | Residue | Details |
P | ALA29-THR44 |
site_id | PS00362 |
Number of Residues | 31 |
Details | RIBOSOMAL_S15 Ribosomal protein S15 signature. LqgHFaehKkDhhSrrgLlrMvsqrrkLldY |
Chain | Residue | Details |
T | LEU39-TYR69 |
site_id | PS00430 |
Number of Residues | 66 |
Details | TONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. mireerllkvlraphvsekastameksntivlkvakdatkaeikaavqklfevevevv.........................................................NTLVVKGK |
Chain | Residue | Details |
2 | MET1-LYS66 |
site_id | PS00464 |
Number of Residues | 25 |
Details | RIBOSOMAL_L22 Ribosomal protein L22 signature. KriMpRAkGRadrilkrtSHITVvV |
Chain | Residue | Details |
1 | LYS83-VAL107 |
site_id | PS00467 |
Number of Residues | 12 |
Details | RIBOSOMAL_L2 Ribosomal protein L2 signature. PtvRGTAmNPvD |
Chain | Residue | Details |
h | PRO218-ASP229 |
site_id | PS00474 |
Number of Residues | 24 |
Details | RIBOSOMAL_L3 Ribosomal protein L3 signature. FadvkkvDvtGtSkGKGfaGtvkR |
Chain | Residue | Details |
j | PHE101-ARG124 |
site_id | PS00475 |
Number of Residues | 31 |
Details | RIBOSOMAL_L15 Ribosomal protein L15 signature. KVILaGeVttp..VtVrglrVTkgAraaIeaaG |
Chain | Residue | Details |
u | LYS109-GLY139 |
site_id | PS00525 |
Number of Residues | 9 |
Details | RIBOSOMAL_L6_1 Ribosomal protein L6 signature 1. PEpYKGKGV |
Chain | Residue | Details |
p | PRO154-VAL162 |
site_id | PS00527 |
Number of Residues | 23 |
Details | RIBOSOMAL_S14 Ribosomal protein S14 signature. R.CrqtgrphgflrkFGLSRiKVR |
Chain | Residue | Details |
S | ARG63-ARG85 |
site_id | PS00548 |
Number of Residues | 35 |
Details | RIBOSOMAL_S3 Ribosomal protein S3 signature. ARtewyreGrVplHt..LradIDyntseahTtyGviG |
Chain | Residue | Details |
I | ALA163-GLY197 |
site_id | PS00579 |
Number of Residues | 15 |
Details | RIBOSOMAL_L29 Ribosomal protein L29 signature. QSHLLKqVRRDVARV |
Chain | Residue | Details |
e | GLN39-VAL53 |
site_id | PS00582 |
Number of Residues | 20 |
Details | RIBOSOMAL_L33 Ribosomal protein L33 signature. YtTtKNkrtkPekLElkKFD |
Chain | Residue | Details |
k | TYR21-ASP40 |
site_id | PS00585 |
Number of Residues | 33 |
Details | RIBOSOMAL_S5 Ribosomal protein S5 signature. GRifsFtAltVVGDgn.GrVGfGygkar.EVpa.AI |
Chain | Residue | Details |
K | GLY28-ILE60 |
site_id | PS00586 |
Number of Residues | 12 |
Details | RIBOSOMAL_L16_1 Ribosomal protein L16 signature 1. KRqGKIWIRVFP |
Chain | Residue | Details |
v | LYS58-PRO69 |
site_id | PS00632 |
Number of Residues | 25 |
Details | RIBOSOMAL_S4 Ribosomal protein S4 signature. LEgRLdnvVYRmgfGaTraeARqLV |
Chain | Residue | Details |
J | LEU94-VAL118 |
site_id | PS00634 |
Number of Residues | 33 |
Details | RIBOSOMAL_L30 Ribosomal protein L30 signature. TLlgLgLrRigHtVeredtpairgMInaVsfMV |
Chain | Residue | Details |
f | THR23-VAL55 |
site_id | PS00646 |
Number of Residues | 14 |
Details | RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHrrGlpVRGQ |
Chain | Residue | Details |
X | ARG87-GLN100 |
site_id | PS00651 |
Number of Residues | 28 |
Details | RIBOSOMAL_L9 Ribosomal protein L9 signature. GslGdqvnVkaGYarNFLvpqgkAvpaT |
Chain | Residue | Details |
r | GLY13-THR40 |
site_id | PS00701 |
Number of Residues | 12 |
Details | RIBOSOMAL_L16_2 Ribosomal protein L16 signature 2. RMGkGKGnveyW |
Chain | Residue | Details |
v | ARG81-TRP92 |
site_id | PS00732 |
Number of Residues | 10 |
Details | RIBOSOMAL_S16 Ribosomal protein S16 signature. VtIRLARHGA |
Chain | Residue | Details |
U | VAL2-ALA11 |
site_id | PS00783 |
Number of Residues | 23 |
Details | RIBOSOMAL_L13 Ribosomal protein L13 signature. VKGMLPkgpl.GRamfrkLkVYaG |
Chain | Residue | Details |
s | VAL105-GLY127 |
site_id | PS00784 |
Number of Residues | 20 |
Details | RIBOSOMAL_L34 Ribosomal protein L34 signature. KRTFQpsvlkRnrsh.GFraR |
Chain | Residue | Details |
m | LYS2-ARG21 |
site_id | PS00828 |
Number of Residues | 27 |
Details | RIBOSOMAL_L36 Ribosomal protein L36 signature. CrnCkiVkRdgvIrViCsaepKHkQrQ |
Chain | Residue | Details |
q | CYS11-GLN37 |
site_id | PS00831 |
Number of Residues | 15 |
Details | RIBOSOMAL_L27 Ribosomal protein L27 signature. GsIIvRQRGtkfhaG |
Chain | Residue | Details |
b | GLY34-GLY48 |
site_id | PS00936 |
Number of Residues | 27 |
Details | RIBOSOMAL_L35 Ribosomal protein L35 signature. KTVrGAaKRFkktgkggfkhkhanl.RH |
Chain | Residue | Details |
o | LYS5-HIS31 |
site_id | PS00937 |
Number of Residues | 17 |
Details | RIBOSOMAL_L20 Ribosomal protein L20 signature. KrqfRqLWIARINaaaR |
Chain | Residue | Details |
z | LYS54-ARG70 |
site_id | PS00962 |
Number of Residues | 12 |
Details | RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. MrDMLKAGVHFG |
Chain | Residue | Details |
G | MET6-GLY17 |
site_id | PS00963 |
Number of Residues | 25 |
Details | RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PdaLFViDadhEhiaIkEannlGIP |
Chain | Residue | Details |
G | PRO158-PRO182 |
site_id | PS01014 |
Number of Residues | 10 |
Details | NUSG Transcription termination factor nusG signature. IFGRaTPVeL |
Chain | Residue | Details |
AB | ILE164-LEU173 |
site_id | PS01015 |
Number of Residues | 16 |
Details | RIBOSOMAL_L19 Ribosomal protein L19 signature. VkRrGAVR.KAKLYYLR |
Chain | Residue | Details |
y | VAL86-ARG101 |
site_id | PS01048 |
Number of Residues | 10 |
Details | RIBOSOMAL_S6 Ribosomal protein S6 signature. GrRQLAYpIN |
Chain | Residue | Details |
L | GLY43-ASN52 |
site_id | PS01108 |
Number of Residues | 18 |
Details | RIBOSOMAL_L24 Ribosomal protein L24 signature. DDeViVLtGkdKGkr.GkV |
Chain | Residue | Details |
3 | ASP8-VAL25 |
site_id | PS01109 |
Number of Residues | 35 |
Details | RIBOSOMAL_L10 Ribosomal protein L10 signature. KqaIvaeVSevakgalsaVvaDsrGVTVdKMteLR |
Chain | Residue | Details |
9 | LYS8-ARG42 |
site_id | PS01143 |
Number of Residues | 22 |
Details | RIBOSOMAL_L31 Ribosomal protein L31 signature. DVcskcHPFFTgkqrdvatg....GR |
Chain | Residue | Details |
g | ASP35-ARG56 |
site_id | PS01166 |
Number of Residues | 13 |
Details | RNA_POL_BETA RNA polymerases beta chain signature. GdKMAGrHGNKGV |
Chain | Residue | Details |
AA | GLY1063-VAL1075 |
site_id | PS01167 |
Number of Residues | 23 |
Details | RIBOSOMAL_L17 Ribosomal protein L17 signature. IkTTlpKaKelrrvvEpLITlAK |
Chain | Residue | Details |
w | ILE34-LYS56 |
site_id | PS01169 |
Number of Residues | 23 |
Details | RIBOSOMAL_L21 Ribosomal protein L21 signature. VkivKfrrRKhyrkqqGHRQwfT |
Chain | Residue | Details |
0 | VAL72-THR94 |
site_id | PS01181 |
Number of Residues | 13 |
Details | RIBOSOMAL_S21 Ribosomal protein S21 signature. DvALRRFKRsceK |
Chain | Residue | Details |
F | ASP13-LYS25 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 1 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"34403461","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"34504068","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"7O19","evidenceCode":"ECO:0000312"},{"source":"PDB","id":"7O1A","evidenceCode":"ECO:0000312"},{"source":"PDB","id":"7O1C","evidenceCode":"ECO:0000312"},{"source":"PDB","id":"7OIZ","evidenceCode":"ECO:0000312"},{"source":"PDB","id":"7OJ0","evidenceCode":"ECO:0000312"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI3 |
Number of Residues | 10 |
Details | Modified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"18723842","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI4 |
Number of Residues | 31 |
Details | Domain: {"description":"KOW","evidences":[{"source":"HAMAP-Rule","id":"MF_00948","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI5 |
Number of Residues | 1 |
Details | Modified residue: {"description":"ADP-ribosylarginine","evidences":[{"source":"PubMed","id":"4371081","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI6 |
Number of Residues | 1 |
Details | Modified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"21696463","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI7 |
Number of Residues | 1 |
Details | Modified residue: {"description":"N6-acetyllysine; by PatZ","evidences":[{"source":"PubMed","id":"21696463","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI8 |
Number of Residues | 11 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"32871103","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"4MEX","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"4MEY","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI9 |
Number of Residues | 1 |
Details | Modified residue: {"description":"N6-acetyllysine","evidences":[{"source":"HAMAP-Rule","id":"MF_01322","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"18723842","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI10 |
Number of Residues | 65 |
Details | Domain: {"description":"S1 motif","evidences":[{"source":"HAMAP-Rule","id":"MF_00945","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI11 |
Number of Residues | 66 |
Details | Domain: {"description":"KH","evidences":[{"source":"HAMAP-Rule","id":"MF_00945","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI12 |
Number of Residues | 50 |
Details | Repeat: {"description":"1"} |
Chain | Residue | Details |
site_id | SWS_FT_FI13 |
Number of Residues | 50 |
Details | Repeat: {"description":"2"} |
Chain | Residue | Details |
site_id | SWS_FT_FI14 |
Number of Residues | 125 |
Details | Region: {"description":"2 X 51 AA approximate repeats"} |
Chain | Residue | Details |
site_id | SWS_FT_FI18 |
Number of Residues | 66 |
Details | Domain: {"description":"S1 motif 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU00180","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI19 |
Number of Residues | 66 |
Details | Domain: {"description":"S1 motif 2","evidences":[{"source":"PROSITE-ProRule","id":"PRU00180","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI20 |
Number of Residues | 70 |
Details | Domain: {"description":"S1 motif 4","evidences":[{"source":"PROSITE-ProRule","id":"PRU00180","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI21 |
Number of Residues | 1 |
Details | Modified residue: {"description":"N6-acetyllysine","evidences":[{"evidenceCode":"ECO:0000250"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI22 |
Number of Residues | 68 |
Details | Domain: {"description":"KH type-2","evidences":[{"source":"HAMAP-Rule","id":"MF_01309","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI23 |
Number of Residues | 60 |
Details | Domain: {"description":"S4 RNA-binding"} |
Chain | Residue | Details |
site_id | SWS_FT_FI24 |
Number of Residues | 63 |
Details | Domain: {"description":"S5 DRBM"} |
Chain | Residue | Details |
site_id | SWS_FT_FI26 |
Number of Residues | 1 |
Details | Modified residue: {"description":"N,N,N-trimethylalanine","evidences":[{"source":"PubMed","id":"7004866","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI27 |
Number of Residues | 2 |
Details | Modified residue: {"description":"N6,N6,N6-trimethyllysine","evidences":[{"source":"PubMed","id":"7004866","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI28 |
Number of Residues | 6 |
Details | Modified residue: {"description":"N6-succinyllysine","evidences":[{"source":"PubMed","id":"21151122","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI30 |
Number of Residues | 1 |
Details | Binding site: {"evidences":[{"evidenceCode":"ECO:0000305"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI31 |
Number of Residues | 9 |
Details | Compositional bias: {"description":"Low complexity","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI32 |
Number of Residues | 1 |
Details | Modified residue: {"description":"N5-methylglutamine","evidences":[{"source":"PubMed","id":"365579","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"331083","evidenceCode":"ECO:0000305"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI33 |
Number of Residues | 1 |
Details | Modified residue: {"description":"N6-acetyllysine","evidences":[{"source":"HAMAP-Rule","id":"MF_01365","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"18723842","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI34 |
Number of Residues | 10 |
Details | Compositional bias: {"description":"Gly residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI35 |
Number of Residues | 1 |
Details | Modified residue: {"description":"N-methylmethionine","evidences":[{"source":"PubMed","id":"786730","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI36 |
Number of Residues | 1 |
Details | Modified residue: {"description":"(3R)-3-hydroxyarginine","evidences":[{"source":"PubMed","id":"23103944","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |