8UKD
SARS-CoV-2 Omicron-XBB.1.5 3-RBD down Spike Protein Trimer consensus (S-GSAS-Omicron-XBB.1.5)
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 3 |
Details | SITE: Cleavage; by host furin => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32142651, ECO:0000269|PubMed:32362314, ECO:0000269|PubMed:32703818, ECO:0000269|PubMed:34159616 |
Chain | Residue | Details |
A | SER689 | |
B | SER689 | |
C | SER689 |
site_id | SWS_FT_FI2 |
Number of Residues | 3 |
Details | SITE: Cleavage; by host TMPRSS2 or CTSL => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32703818, ECO:0000269|PubMed:34159616 |
Chain | Residue | Details |
A | GLU819 | |
B | GLU819 | |
C | GLU819 |
site_id | SWS_FT_FI3 |
Number of Residues | 9 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | ASN20 | |
A | PRO1162 | |
A | VAL1177 | |
B | ASN20 | |
B | PRO1162 | |
B | VAL1177 | |
C | ASN20 | |
C | PRO1162 | |
C | VAL1177 |
site_id | SWS_FT_FI4 |
Number of Residues | 15 |
Details | CARBOHYD: N-linked (GlcNAc...) (hybrid) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | TRP64 | |
B | ALA1078 | |
C | TRP64 | |
C | ASN125 | |
C | SER721 | |
C | ILE805 | |
C | ALA1078 | |
A | ASN125 | |
A | SER721 | |
A | ILE805 | |
A | ALA1078 | |
B | TRP64 | |
B | ASN125 | |
B | SER721 | |
B | ILE805 |
site_id | SWS_FT_FI5 |
Number of Residues | 9 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | LYS77 | |
A | MET153 | |
A | ILE1198 | |
B | LYS77 | |
B | MET153 | |
B | ILE1198 | |
C | LYS77 | |
C | MET153 | |
C | ILE1198 |
site_id | SWS_FT_FI6 |
Number of Residues | 21 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | GLU169 | |
B | LEU335 | |
B | PHE347 | |
B | VAL620 | |
B | GLU661 | |
B | TRP1102 | |
C | GLU169 | |
C | THR286 | |
C | LEU335 | |
C | PHE347 | |
C | VAL620 | |
A | THR286 | |
C | GLU661 | |
C | TRP1102 | |
A | LEU335 | |
A | PHE347 | |
A | VAL620 | |
A | GLU661 | |
A | TRP1102 | |
B | GLU169 | |
B | THR286 |
site_id | SWS_FT_FI7 |
Number of Residues | 6 |
Details | CARBOHYD: N-linked (GlcNAc...) (high mannose) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32363391, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | PHE238 | |
A | ALA713 | |
B | PHE238 | |
B | ALA713 | |
C | PHE238 | |
C | ALA713 |
site_id | SWS_FT_FI8 |
Number of Residues | 3 |
Details | CARBOHYD: O-linked (GalNAc) threonine; by host => ECO:0000269|PubMed:32363391 |
Chain | Residue | Details |
A | VAL327 | |
B | VAL327 | |
C | VAL327 |
site_id | SWS_FT_FI9 |
Number of Residues | 3 |
Details | CARBOHYD: O-linked (HexNAc...) serine; by host => ECO:0000269|PubMed:32363391 |
Chain | Residue | Details |
A | PHE329 | |
B | PHE329 | |
C | PHE329 |
site_id | SWS_FT_FI10 |
Number of Residues | 3 |
Details | CARBOHYD: N-linked (GlcNAc...) (hybrid) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | GLN607 | |
B | GLN607 | |
C | GLN607 |
site_id | SWS_FT_FI11 |
Number of Residues | 6 |
Details | CARBOHYD: O-linked (GlcNAc...) threonine; by host GALNT1 => ECO:0000269|PubMed:34732583 |
Chain | Residue | Details |
A | SER680 | |
A | GLY682 | |
B | SER680 | |
B | GLY682 | |
C | SER680 | |
C | GLY682 |
site_id | SWS_FT_FI12 |
Number of Residues | 3 |
Details | CARBOHYD: N-linked (GlcNAc...) (complex) asparagine; by host => ECO:0000255|HAMAP-Rule:MF_04099, ECO:0000269|PubMed:32155444, ECO:0000269|PubMed:32366695, ECO:0000269|PubMed:32979942 |
Chain | Residue | Details |
A | TYR1138 | |
B | TYR1138 | |
C | TYR1138 |