8T5H
Cryo-EM studies of the interplay between uS2 ribosomal protein and leaderless mRNA during bacterial translation initiation
This is a non-PDB format compatible entry.
Functional Information from PROSITE/UniProt
site_id | PS00049 |
Number of Residues | 27 |
Details | RIBOSOMAL_L14 Ribosomal protein L14 signature. AVVVrtkkgvrrp.DGsvirFdgNacVL |
Chain | Residue | Details |
K | ALA59-LEU85 |
site_id | PS00052 |
Number of Residues | 27 |
Details | RIBOSOMAL_S7 Ribosomal protein S7 signature. SeLlakFVnilmvdGKKstaesIVysA |
Chain | Residue | Details |
f | SER19-ALA45 |
site_id | PS00053 |
Number of Residues | 18 |
Details | RIBOSOMAL_S8 Ribosomal protein S8 signature. GiaVVSTSkGVMtdraAR |
Chain | Residue | Details |
g | GLY99-ARG116 |
site_id | PS00054 |
Number of Residues | 23 |
Details | RIBOSOMAL_S11 Ribosomal protein S11 signature. IrALnaA.GFrItnitDvTPiPHN |
Chain | Residue | Details |
j | ILE96-ASN118 |
site_id | PS00055 |
Number of Residues | 8 |
Details | RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAlR |
Chain | Residue | Details |
k | LYS42-ARG49 |
site_id | PS00056 |
Number of Residues | 13 |
Details | RIBOSOMAL_S17 Ribosomal protein S17 signature. GDvVeIrEcRPLS |
Chain | Residue | Details |
p | GLY55-SER67 |
site_id | PS00057 |
Number of Residues | 24 |
Details | RIBOSOMAL_S18 Ribosomal protein S18 signature. IDYkd.IatLknYITEs.GKIvpsRI |
Chain | Residue | Details |
q | ILE20-ILE43 |
site_id | PS00061 |
Number of Residues | 29 |
Details | ADH_SHORT Short-chain dehydrogenases/reductases family signature. PdhkhavialTsiYGVGKTRSkAILaAAG |
Chain | Residue | Details |
l | PRO9-GLY37 |
site_id | PS00323 |
Number of Residues | 25 |
Details | RIBOSOMAL_S19 Ribosomal protein S19 signature. NGRqhvpvfVtdemVGhkLGEFapT |
Chain | Residue | Details |
r | ASN52-THR76 |
site_id | PS00358 |
Number of Residues | 17 |
Details | RIBOSOMAL_L5 Ribosomal protein L5 signature. LaaISGQkpLiTkARkS |
Chain | Residue | Details |
F | LEU56-SER72 |
site_id | PS00360 |
Number of Residues | 19 |
Details | RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGisGQagAirhGiTRAL |
Chain | Residue | Details |
h | GLY68-LEU86 |
site_id | PS00361 |
Number of Residues | 16 |
Details | RIBOSOMAL_S10 Ribosomal protein S10 signature. AkrtGAqvrGPIpLPT |
Chain | Residue | Details |
i | ALA29-THR44 |
site_id | PS00362 |
Number of Residues | 31 |
Details | RIBOSOMAL_S15 Ribosomal protein S15 signature. LqgHFaehKkDhhSrrgLlrMvsqrrkLldY |
Chain | Residue | Details |
n | LEU38-TYR68 |
site_id | PS00430 |
Number of Residues | 66 |
Details | TONB_DEPENDENT_REC_1 TonB-dependent receptor (TBDR) proteins signature 1. mireerllkvlraphvsekastameksntivlkvakdatkaeikaavqklfevevevv.........................................................NTLVVKGK |
Chain | Residue | Details |
T | MET1-LYS66 |
site_id | PS00464 |
Number of Residues | 25 |
Details | RIBOSOMAL_L22 Ribosomal protein L22 signature. KriMpRAkGRadrilkrtSHITVvV |
Chain | Residue | Details |
S | LYS83-VAL107 |
site_id | PS00467 |
Number of Residues | 12 |
Details | RIBOSOMAL_L2 Ribosomal protein L2 signature. PtvRGTAmNPvD |
Chain | Residue | Details |
C | PRO217-ASP228 |
site_id | PS00474 |
Number of Residues | 24 |
Details | RIBOSOMAL_L3 Ribosomal protein L3 signature. FadvkkvDvtGtSkGKGfaGtvkR |
Chain | Residue | Details |
D | PHE101-ARG124 |
site_id | PS00475 |
Number of Residues | 31 |
Details | RIBOSOMAL_L15 Ribosomal protein L15 signature. KVILaGeVttp..VtVrglrVTkgAraaIeaaG |
Chain | Residue | Details |
L | LYS109-GLY139 |
site_id | PS00525 |
Number of Residues | 9 |
Details | RIBOSOMAL_L6_1 Ribosomal protein L6 signature 1. PEpYKGKGV |
Chain | Residue | Details |
G | PRO153-VAL161 |
site_id | PS00527 |
Number of Residues | 23 |
Details | RIBOSOMAL_S14 Ribosomal protein S14 signature. R.CrqtgrphgflrkFGLSRiKVR |
Chain | Residue | Details |
m | ARG63-ARG85 |
site_id | PS00548 |
Number of Residues | 35 |
Details | RIBOSOMAL_S3 Ribosomal protein S3 signature. ARtewyreGrVplHt..LradIDyntseahTtyGviG |
Chain | Residue | Details |
b | ALA162-GLY196 |
site_id | PS00579 |
Number of Residues | 15 |
Details | RIBOSOMAL_L29 Ribosomal protein L29 signature. QSHLLKqVRRDVARV |
Chain | Residue | Details |
Y | GLN39-VAL53 |
site_id | PS00582 |
Number of Residues | 20 |
Details | RIBOSOMAL_L33 Ribosomal protein L33 signature. YtTtKNkrtkPekLElkKFD |
Chain | Residue | Details |
1 | TYR20-ASP39 |
site_id | PS00585 |
Number of Residues | 33 |
Details | RIBOSOMAL_S5 Ribosomal protein S5 signature. GRifsFtAltVVGDgn.GrVGfGygkar.EVpa.AI |
Chain | Residue | Details |
d | GLY27-ILE59 |
site_id | PS00586 |
Number of Residues | 12 |
Details | RIBOSOMAL_L16_1 Ribosomal protein L16 signature 1. KRqGKIWIRVFP |
Chain | Residue | Details |
M | LYS58-PRO69 |
site_id | PS00632 |
Number of Residues | 25 |
Details | RIBOSOMAL_S4 Ribosomal protein S4 signature. LEgRLdnvVYRmgfGaTraeARqLV |
Chain | Residue | Details |
c | LEU93-VAL117 |
site_id | PS00634 |
Number of Residues | 33 |
Details | RIBOSOMAL_L30 Ribosomal protein L30 signature. TLlgLgLrRigHtVeredtpairgMInaVsfMV |
Chain | Residue | Details |
Z | THR22-VAL54 |
site_id | PS00646 |
Number of Residues | 14 |
Details | RIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHrrGlpVRGQ |
Chain | Residue | Details |
l | ARG86-GLN99 |
site_id | PS00701 |
Number of Residues | 12 |
Details | RIBOSOMAL_L16_2 Ribosomal protein L16 signature 2. RMGkGKGnveyW |
Chain | Residue | Details |
M | ARG81-TRP92 |
site_id | PS00732 |
Number of Residues | 10 |
Details | RIBOSOMAL_S16 Ribosomal protein S16 signature. VtIRLARHGA |
Chain | Residue | Details |
o | VAL2-ALA11 |
site_id | PS00783 |
Number of Residues | 23 |
Details | RIBOSOMAL_L13 Ribosomal protein L13 signature. VKGMLPkgpl.GRamfrkLkVYaG |
Chain | Residue | Details |
J | VAL105-GLY127 |
site_id | PS00784 |
Number of Residues | 20 |
Details | RIBOSOMAL_L34 Ribosomal protein L34 signature. KRTFQpsvlkRnrsh.GFraR |
Chain | Residue | Details |
2 | LYS2-ARG21 |
site_id | PS00828 |
Number of Residues | 27 |
Details | RIBOSOMAL_L36 Ribosomal protein L36 signature. CrnCkiVkRdgvIrViCsaepKHkQrQ |
Chain | Residue | Details |
4 | CYS11-GLN37 |
site_id | PS00831 |
Number of Residues | 15 |
Details | RIBOSOMAL_L27 Ribosomal protein L27 signature. GsIIvRQRGtkfhaG |
Chain | Residue | Details |
W | GLY33-GLY47 |
site_id | PS00936 |
Number of Residues | 27 |
Details | RIBOSOMAL_L35 Ribosomal protein L35 signature. KTVrGAaKRFkktgkggfkhkhanl.RH |
Chain | Residue | Details |
3 | LYS4-HIS30 |
site_id | PS00937 |
Number of Residues | 17 |
Details | RIBOSOMAL_L20 Ribosomal protein L20 signature. KrqfRqLWIARINaaaR |
Chain | Residue | Details |
Q | LYS53-ARG69 |
site_id | PS01014 |
Number of Residues | 10 |
Details | NUSG Transcription termination factor nusG signature. IFGRaTPVeL |
Chain | Residue | Details |
u | ILE164-LEU173 |
site_id | PS01015 |
Number of Residues | 16 |
Details | RIBOSOMAL_L19 Ribosomal protein L19 signature. VkRrGAVR.KAKLYYLR |
Chain | Residue | Details |
P | VAL85-ARG100 |
site_id | PS01048 |
Number of Residues | 10 |
Details | RIBOSOMAL_S6 Ribosomal protein S6 signature. GrRQLAYpIN |
Chain | Residue | Details |
e | GLY43-ASN52 |
site_id | PS01108 |
Number of Residues | 18 |
Details | RIBOSOMAL_L24 Ribosomal protein L24 signature. DDeViVLtGkdKGkr.GkV |
Chain | Residue | Details |
U | ASP7-VAL24 |
site_id | PS01167 |
Number of Residues | 23 |
Details | RIBOSOMAL_L17 Ribosomal protein L17 signature. IkTTlpKaKelrrvvEpLITlAK |
Chain | Residue | Details |
N | ILE34-LYS56 |
site_id | PS01169 |
Number of Residues | 23 |
Details | RIBOSOMAL_L21 Ribosomal protein L21 signature. VkivKfrrRKhyrkqqGHRQwfT |
Chain | Residue | Details |
R | VAL72-THR94 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 1 |
Details | MOD_RES: N6-succinyllysine => ECO:0000269|PubMed:21151122 |
Chain | Residue | Details |
D | LYS38 |
site_id | SWS_FT_FI2 |
Number of Residues | 1 |
Details | MOD_RES: N5-methylglutamine => ECO:0000269|PubMed:365579, ECO:0000305|PubMed:331083 |
Chain | Residue | Details |
D | GLN150 |