8R2I
Cryo-EM Structure of native Photosystem II assembly intermediate from Chlamydomonas reinhardtii
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| 1 | 0009523 | cellular_component | photosystem II |
| 1 | 0009535 | cellular_component | chloroplast thylakoid membrane |
| 1 | 0015979 | biological_process | photosynthesis |
| 1 | 0016020 | cellular_component | membrane |
| 2 | 0009523 | cellular_component | photosystem II |
| 2 | 0010206 | biological_process | photosystem II repair |
| 2 | 0010207 | biological_process | photosystem II assembly |
| A | 0005506 | molecular_function | iron ion binding |
| A | 0009055 | molecular_function | electron transfer activity |
| A | 0009523 | cellular_component | photosystem II |
| A | 0009535 | cellular_component | chloroplast thylakoid membrane |
| A | 0009635 | biological_process | response to herbicide |
| A | 0009772 | biological_process | photosynthetic electron transport in photosystem II |
| A | 0010242 | molecular_function | oxygen evolving activity |
| A | 0015979 | biological_process | photosynthesis |
| A | 0016168 | molecular_function | chlorophyll binding |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0016682 | molecular_function | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor |
| A | 0019684 | biological_process | photosynthesis, light reaction |
| A | 0046872 | molecular_function | metal ion binding |
| B | 0009521 | cellular_component | photosystem |
| B | 0009523 | cellular_component | photosystem II |
| B | 0009535 | cellular_component | chloroplast thylakoid membrane |
| B | 0009579 | cellular_component | thylakoid |
| B | 0009767 | biological_process | photosynthetic electron transport chain |
| B | 0009772 | biological_process | photosynthetic electron transport in photosystem II |
| B | 0015979 | biological_process | photosynthesis |
| B | 0016020 | cellular_component | membrane |
| B | 0016168 | molecular_function | chlorophyll binding |
| B | 0019684 | biological_process | photosynthesis, light reaction |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0009521 | cellular_component | photosystem |
| C | 0009523 | cellular_component | photosystem II |
| C | 0009535 | cellular_component | chloroplast thylakoid membrane |
| C | 0009579 | cellular_component | thylakoid |
| C | 0009767 | biological_process | photosynthetic electron transport chain |
| C | 0009772 | biological_process | photosynthetic electron transport in photosystem II |
| C | 0015979 | biological_process | photosynthesis |
| C | 0016020 | cellular_component | membrane |
| C | 0016168 | molecular_function | chlorophyll binding |
| C | 0019684 | biological_process | photosynthesis, light reaction |
| C | 0046872 | molecular_function | metal ion binding |
| D | 0005506 | molecular_function | iron ion binding |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0009055 | molecular_function | electron transfer activity |
| D | 0009523 | cellular_component | photosystem II |
| D | 0009535 | cellular_component | chloroplast thylakoid membrane |
| D | 0009772 | biological_process | photosynthetic electron transport in photosystem II |
| D | 0010242 | molecular_function | oxygen evolving activity |
| D | 0015979 | biological_process | photosynthesis |
| D | 0016020 | cellular_component | membrane |
| D | 0016168 | molecular_function | chlorophyll binding |
| D | 0016491 | molecular_function | oxidoreductase activity |
| D | 0019684 | biological_process | photosynthesis, light reaction |
| D | 0046872 | molecular_function | metal ion binding |
| E | 0005506 | molecular_function | iron ion binding |
| E | 0009055 | molecular_function | electron transfer activity |
| E | 0009523 | cellular_component | photosystem II |
| E | 0009535 | cellular_component | chloroplast thylakoid membrane |
| E | 0009536 | cellular_component | plastid |
| E | 0009539 | cellular_component | photosystem II reaction center |
| E | 0009579 | cellular_component | thylakoid |
| E | 0009767 | biological_process | photosynthetic electron transport chain |
| E | 0015979 | biological_process | photosynthesis |
| E | 0016020 | cellular_component | membrane |
| E | 0019684 | biological_process | photosynthesis, light reaction |
| E | 0020037 | molecular_function | heme binding |
| E | 0046872 | molecular_function | metal ion binding |
| F | 0009523 | cellular_component | photosystem II |
| F | 0009539 | cellular_component | photosystem II reaction center |
| F | 0009767 | biological_process | photosynthetic electron transport chain |
| F | 0015979 | biological_process | photosynthesis |
| F | 0016020 | cellular_component | membrane |
| F | 0019684 | biological_process | photosynthesis, light reaction |
| F | 0020037 | molecular_function | heme binding |
| H | 0009523 | cellular_component | photosystem II |
| H | 0015979 | biological_process | photosynthesis |
| H | 0016020 | cellular_component | membrane |
| H | 0042301 | molecular_function | phosphate ion binding |
| H | 0050821 | biological_process | protein stabilization |
| I | 0009523 | cellular_component | photosystem II |
| I | 0009539 | cellular_component | photosystem II reaction center |
| I | 0015979 | biological_process | photosynthesis |
| I | 0016020 | cellular_component | membrane |
| K | 0009523 | cellular_component | photosystem II |
| K | 0009539 | cellular_component | photosystem II reaction center |
| K | 0015979 | biological_process | photosynthesis |
Functional Information from PROSITE/UniProt
| site_id | PS00244 |
| Number of Residues | 27 |
| Details | REACTION_CENTER Photosynthetic reaction center proteins signature. NilmhPfHmlGvagvfggslfsAmHGS |
| Chain | Residue | Details |
| A | ASN191-SER217 | |
| D | ASN190-ALA216 |
| site_id | PS00537 |
| Number of Residues | 15 |
| Details | CYTOCHROME_B559 Cytochrome b559 subunits heme-binding site signature. IfTVRWlaIHGIAVP |
| Chain | Residue | Details |
| F | ILE14-PRO28 | |
| E | LEU14-PRO28 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 81 |
| Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | Binding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 8 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 1 |
| Details | Site: {"description":"Tyrosine radical intermediate","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 1 |
| Details | Site: {"description":"Stabilizes free radical intermediate","evidences":[{"source":"HAMAP-Rule","id":"MF_01379","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 90 |
| Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01495","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 108 |
| Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01496","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI8 |
| Number of Residues | 1 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01496","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI9 |
| Number of Residues | 65 |
| Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01383","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI10 |
| Number of Residues | 2 |
| Details | Binding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_01383","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI11 |
| Number of Residues | 5 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01383","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI12 |
| Number of Residues | 14 |
| Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00642","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI13 |
| Number of Residues | 1 |
| Details | Binding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_00642","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI14 |
| Number of Residues | 16 |
| Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00643","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI15 |
| Number of Residues | 1 |
| Details | Binding site: {"description":"axial binding residue","evidences":[{"source":"HAMAP-Rule","id":"MF_00643","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI16 |
| Number of Residues | 20 |
| Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00752","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI17 |
| Number of Residues | 20 |
| Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01316","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI18 |
| Number of Residues | 20 |
| Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_00441","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI19 |
| Number of Residues | 20 |
| Details | Transmembrane: {"description":"Helical","evidences":[{"source":"HAMAP-Rule","id":"MF_01329","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
