8Q3N
Bacterial transcription termination factor Rho + ADP
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003676 | molecular_function | nucleic acid binding |
| A | 0003723 | molecular_function | RNA binding |
| A | 0005515 | molecular_function | protein binding |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0005829 | cellular_component | cytosol |
| A | 0006353 | biological_process | DNA-templated transcription termination |
| A | 0008186 | molecular_function | ATP-dependent activity, acting on RNA |
| A | 0016020 | cellular_component | membrane |
| A | 0016887 | molecular_function | ATP hydrolysis activity |
| A | 0039630 | molecular_function | RNA translocase activity |
| A | 0042802 | molecular_function | identical protein binding |
| A | 0062176 | biological_process | R-loop processing |
| B | 0003676 | molecular_function | nucleic acid binding |
| B | 0003723 | molecular_function | RNA binding |
| B | 0005515 | molecular_function | protein binding |
| B | 0005524 | molecular_function | ATP binding |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0005829 | cellular_component | cytosol |
| B | 0006353 | biological_process | DNA-templated transcription termination |
| B | 0008186 | molecular_function | ATP-dependent activity, acting on RNA |
| B | 0016020 | cellular_component | membrane |
| B | 0016887 | molecular_function | ATP hydrolysis activity |
| B | 0039630 | molecular_function | RNA translocase activity |
| B | 0042802 | molecular_function | identical protein binding |
| B | 0062176 | biological_process | R-loop processing |
| C | 0003676 | molecular_function | nucleic acid binding |
| C | 0003723 | molecular_function | RNA binding |
| C | 0005515 | molecular_function | protein binding |
| C | 0005524 | molecular_function | ATP binding |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0005829 | cellular_component | cytosol |
| C | 0006353 | biological_process | DNA-templated transcription termination |
| C | 0008186 | molecular_function | ATP-dependent activity, acting on RNA |
| C | 0016020 | cellular_component | membrane |
| C | 0016887 | molecular_function | ATP hydrolysis activity |
| C | 0039630 | molecular_function | RNA translocase activity |
| C | 0042802 | molecular_function | identical protein binding |
| C | 0062176 | biological_process | R-loop processing |
| D | 0003676 | molecular_function | nucleic acid binding |
| D | 0003723 | molecular_function | RNA binding |
| D | 0005515 | molecular_function | protein binding |
| D | 0005524 | molecular_function | ATP binding |
| D | 0005737 | cellular_component | cytoplasm |
| D | 0005829 | cellular_component | cytosol |
| D | 0006353 | biological_process | DNA-templated transcription termination |
| D | 0008186 | molecular_function | ATP-dependent activity, acting on RNA |
| D | 0016020 | cellular_component | membrane |
| D | 0016887 | molecular_function | ATP hydrolysis activity |
| D | 0039630 | molecular_function | RNA translocase activity |
| D | 0042802 | molecular_function | identical protein binding |
| D | 0062176 | biological_process | R-loop processing |
| E | 0003676 | molecular_function | nucleic acid binding |
| E | 0003723 | molecular_function | RNA binding |
| E | 0005515 | molecular_function | protein binding |
| E | 0005524 | molecular_function | ATP binding |
| E | 0005737 | cellular_component | cytoplasm |
| E | 0005829 | cellular_component | cytosol |
| E | 0006353 | biological_process | DNA-templated transcription termination |
| E | 0008186 | molecular_function | ATP-dependent activity, acting on RNA |
| E | 0016020 | cellular_component | membrane |
| E | 0016887 | molecular_function | ATP hydrolysis activity |
| E | 0039630 | molecular_function | RNA translocase activity |
| E | 0042802 | molecular_function | identical protein binding |
| E | 0062176 | biological_process | R-loop processing |
| F | 0003676 | molecular_function | nucleic acid binding |
| F | 0003723 | molecular_function | RNA binding |
| F | 0005515 | molecular_function | protein binding |
| F | 0005524 | molecular_function | ATP binding |
| F | 0005737 | cellular_component | cytoplasm |
| F | 0005829 | cellular_component | cytosol |
| F | 0006353 | biological_process | DNA-templated transcription termination |
| F | 0008186 | molecular_function | ATP-dependent activity, acting on RNA |
| F | 0016020 | cellular_component | membrane |
| F | 0016887 | molecular_function | ATP hydrolysis activity |
| F | 0039630 | molecular_function | RNA translocase activity |
| F | 0042802 | molecular_function | identical protein binding |
| F | 0062176 | biological_process | R-loop processing |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 450 |
| Details | Domain: {"description":"Rho RNA-BD","evidences":[{"source":"HAMAP-Rule","id":"MF_01884","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"12859904","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 714 |
| Details | Region: {"description":"N-terminal RNA PBS site","evidences":[{"source":"PubMed","id":"12859904","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 174 |
| Details | Region: {"description":"Linker","evidences":[{"source":"PubMed","id":"12859904","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 66 |
| Details | Motif: {"description":"Q-loop","evidences":[{"source":"HAMAP-Rule","id":"MF_01884","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"17081977","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"19879839","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"34023400","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"7500353","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 24 |
| Details | Motif: {"description":"R-loop","evidences":[{"source":"HAMAP-Rule","id":"MF_01884","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"19879839","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"34023400","evidenceCode":"ECO:0000305"},{"source":"PubMed","id":"7500353","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 12 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"12859904","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"1PV4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ICE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E3H","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E5L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E5P","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E70","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI7 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"PDB","id":"3ICE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E3H","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E5L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E5P","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E70","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI8 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01884","evidenceCode":"ECO:0000255"},{"source":"PDB","id":"1XPO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1XPR","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"1XPU","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ICE","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI9 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01884","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"12859904","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"1PV4","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI10 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"12859904","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"1PV4","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI11 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01884","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"12859904","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"1PV4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ICE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E3H","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E5L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E5P","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E70","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI12 |
| Number of Residues | 6 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_01884","evidenceCode":"ECO:0000255"},{"source":"PDB","id":"3ICE","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E3H","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E5L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E5P","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8E70","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
