8Q3M
Structure of Nucleosome Core with a Bound Kaposi Sarcoma Associated Herpesvirus LANA Peptide Having a Methionine to Ornithine Substitution
This is a non-PDB format compatible entry.
Functional Information from GO Data
Chain | GOid | namespace | contents |
AAA | 0000786 | cellular_component | nucleosome |
AAA | 0003677 | molecular_function | DNA binding |
AAA | 0030527 | molecular_function | structural constituent of chromatin |
AAA | 0046982 | molecular_function | protein heterodimerization activity |
BBB | 0003677 | molecular_function | DNA binding |
BBB | 0030527 | molecular_function | structural constituent of chromatin |
BBB | 0046982 | molecular_function | protein heterodimerization activity |
CCC | 0000786 | cellular_component | nucleosome |
CCC | 0003677 | molecular_function | DNA binding |
CCC | 0030527 | molecular_function | structural constituent of chromatin |
CCC | 0046982 | molecular_function | protein heterodimerization activity |
DDD | 0000786 | cellular_component | nucleosome |
DDD | 0003677 | molecular_function | DNA binding |
DDD | 0030527 | molecular_function | structural constituent of chromatin |
DDD | 0046982 | molecular_function | protein heterodimerization activity |
EEE | 0000786 | cellular_component | nucleosome |
EEE | 0003677 | molecular_function | DNA binding |
EEE | 0030527 | molecular_function | structural constituent of chromatin |
EEE | 0046982 | molecular_function | protein heterodimerization activity |
FFF | 0003677 | molecular_function | DNA binding |
FFF | 0030527 | molecular_function | structural constituent of chromatin |
FFF | 0046982 | molecular_function | protein heterodimerization activity |
GGG | 0000786 | cellular_component | nucleosome |
GGG | 0003677 | molecular_function | DNA binding |
GGG | 0030527 | molecular_function | structural constituent of chromatin |
GGG | 0046982 | molecular_function | protein heterodimerization activity |
HHH | 0000786 | cellular_component | nucleosome |
HHH | 0003677 | molecular_function | DNA binding |
HHH | 0030527 | molecular_function | structural constituent of chromatin |
HHH | 0046982 | molecular_function | protein heterodimerization activity |
Functional Information from PROSITE/UniProt
site_id | PS00046 |
Number of Residues | 7 |
Details | HISTONE_H2A Histone H2A signature. AGLqFPV |
Chain | Residue | Details |
CCC | ALA21-VAL27 |
site_id | PS00357 |
Number of Residues | 23 |
Details | HISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG |
Chain | Residue | Details |
DDD | ARG89-GLY111 |
site_id | PS00959 |
Number of Residues | 9 |
Details | HISTONE_H3_2 Histone H3 signature 2. PFqRLVREI |
Chain | Residue | Details |
AAA | PRO66-ILE74 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 6 |
Details | MOD_RES: N6-succinyllysine; alternate => ECO:0000269|PubMed:22389435 |
Chain | Residue | Details |
DDD | LYS31 | |
DDD | LYS113 | |
DDD | LYS117 | |
HHH | LYS31 | |
HHH | LYS113 | |
HHH | LYS117 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | MOD_RES: PolyADP-ribosyl glutamic acid => ECO:0000250|UniProtKB:Q64475 |
Chain | Residue | Details |
DDD | GLU32 | |
HHH | GLU32 | |
FFF | LYS16 | |
FFF | LYS44 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | MOD_RES: Phosphoserine; by AMPK => ECO:0000250|UniProtKB:Q8CGP1 |
Chain | Residue | Details |
DDD | SER33 | |
HHH | SER33 | |
GGG | LYS74 | |
GGG | LYS75 |
site_id | SWS_FT_FI4 |
Number of Residues | 4 |
Details | MOD_RES: N6-lactoyllysine; alternate => ECO:0000269|PubMed:31645732 |
Chain | Residue | Details |
DDD | LYS40 | |
DDD | LYS82 | |
HHH | LYS40 | |
HHH | LYS82 | |
FFF | LYS77 | |
FFF | LYS91 |
site_id | SWS_FT_FI5 |
Number of Residues | 4 |
Details | MOD_RES: N6-methyllysine; alternate => ECO:0000269|PubMed:16627869 |
Chain | Residue | Details |
DDD | LYS43 | |
DDD | LYS105 | |
HHH | LYS43 | |
HHH | LYS105 |
site_id | SWS_FT_FI6 |
Number of Residues | 2 |
Details | MOD_RES: N6-(2-hydroxyisobutyryl)lysine; alternate => ECO:0000269|PubMed:24681537 |
Chain | Residue | Details |
DDD | LYS54 | |
HHH | LYS54 | |
GGG | LYS118 | |
GGG | LYS119 |
site_id | SWS_FT_FI7 |
Number of Residues | 2 |
Details | MOD_RES: Dimethylated arginine => ECO:0000250|UniProtKB:Q96A08 |
Chain | Residue | Details |
DDD | ARG76 | |
HHH | ARG76 |
site_id | SWS_FT_FI8 |
Number of Residues | 4 |
Details | MOD_RES: Omega-N-methylarginine => ECO:0000250|UniProtKB:Q96A08 |
Chain | Residue | Details |
DDD | ARG83 | |
DDD | ARG89 | |
HHH | ARG83 | |
HHH | ARG89 |
site_id | SWS_FT_FI9 |
Number of Residues | 2 |
Details | MOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:Q00729 |
Chain | Residue | Details |
DDD | THR112 | |
HHH | THR112 |
site_id | SWS_FT_FI10 |
Number of Residues | 2 |
Details | CARBOHYD: O-linked (GlcNAc) serine => ECO:0000250|UniProtKB:P62807 |
Chain | Residue | Details |
DDD | SER109 | |
HHH | SER109 |
site_id | SWS_FT_FI11 |
Number of Residues | 2 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000269|PubMed:21726816 |
Chain | Residue | Details |
DDD | LYS31 | |
HHH | LYS31 | |
BBB | LYS79 | |
FFF | LYS20 | |
FFF | LYS59 | |
FFF | LYS79 |
site_id | SWS_FT_FI12 |
Number of Residues | 4 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000269|PubMed:16307923, ECO:0000269|PubMed:16627869, ECO:0000269|PubMed:16713563 |
Chain | Residue | Details |
DDD | LYS117 | |
HHH | LYS117 |
site_id | SWS_FT_FI13 |
Number of Residues | 2 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in UFM1); alternate => ECO:0000269|PubMed:30886146 |
Chain | Residue | Details |
BBB | LYS31 | |
FFF | LYS31 |