Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8P5T

Single particle cryo-EM structure of the homohexameric 2-oxoglutarate dehydrogenase OdhA from Corynebacterium glutamicum

Functional Information from GO Data
ChainGOidnamespacecontents
A0000287molecular_functionmagnesium ion binding
A0004149molecular_functiondihydrolipoyllysine-residue succinyltransferase activity
A0004591molecular_functionoxoglutarate dehydrogenase (succinyl-transferring) activity
A0005515molecular_functionprotein binding
A0006099biological_processtricarboxylic acid cycle
A0016491molecular_functionoxidoreductase activity
A0016624molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
A0016746molecular_functionacyltransferase activity
A0030976molecular_functionthiamine pyrophosphate binding
A0046872molecular_functionmetal ion binding
B0000287molecular_functionmagnesium ion binding
B0004149molecular_functiondihydrolipoyllysine-residue succinyltransferase activity
B0004591molecular_functionoxoglutarate dehydrogenase (succinyl-transferring) activity
B0005515molecular_functionprotein binding
B0006099biological_processtricarboxylic acid cycle
B0016491molecular_functionoxidoreductase activity
B0016624molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
B0016746molecular_functionacyltransferase activity
B0030976molecular_functionthiamine pyrophosphate binding
B0046872molecular_functionmetal ion binding
C0000287molecular_functionmagnesium ion binding
C0004149molecular_functiondihydrolipoyllysine-residue succinyltransferase activity
C0004591molecular_functionoxoglutarate dehydrogenase (succinyl-transferring) activity
C0005515molecular_functionprotein binding
C0006099biological_processtricarboxylic acid cycle
C0016491molecular_functionoxidoreductase activity
C0016624molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
C0016746molecular_functionacyltransferase activity
C0030976molecular_functionthiamine pyrophosphate binding
C0046872molecular_functionmetal ion binding
D0000287molecular_functionmagnesium ion binding
D0004149molecular_functiondihydrolipoyllysine-residue succinyltransferase activity
D0004591molecular_functionoxoglutarate dehydrogenase (succinyl-transferring) activity
D0005515molecular_functionprotein binding
D0006099biological_processtricarboxylic acid cycle
D0016491molecular_functionoxidoreductase activity
D0016624molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
D0016746molecular_functionacyltransferase activity
D0030976molecular_functionthiamine pyrophosphate binding
D0046872molecular_functionmetal ion binding
E0000287molecular_functionmagnesium ion binding
E0004149molecular_functiondihydrolipoyllysine-residue succinyltransferase activity
E0004591molecular_functionoxoglutarate dehydrogenase (succinyl-transferring) activity
E0005515molecular_functionprotein binding
E0006099biological_processtricarboxylic acid cycle
E0016491molecular_functionoxidoreductase activity
E0016624molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
E0016746molecular_functionacyltransferase activity
E0030976molecular_functionthiamine pyrophosphate binding
E0046872molecular_functionmetal ion binding
F0000287molecular_functionmagnesium ion binding
F0004149molecular_functiondihydrolipoyllysine-residue succinyltransferase activity
F0004591molecular_functionoxoglutarate dehydrogenase (succinyl-transferring) activity
F0005515molecular_functionprotein binding
F0006099biological_processtricarboxylic acid cycle
F0016491molecular_functionoxidoreductase activity
F0016624molecular_functionoxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
F0016746molecular_functionacyltransferase activity
F0030976molecular_functionthiamine pyrophosphate binding
F0046872molecular_functionmetal ion binding
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: Proton acceptor; for succinyltransferase activity => ECO:0000269|PubMed:20675489
ChainResidueDetails
AHIS316
BHIS316
CHIS316
DHIS316
EHIS316
FHIS316

site_idSWS_FT_FI2
Number of Residues90
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:A0R2B1
ChainResidueDetails
AARG544
AHIS1017
ATHR1035
AARG1051
ALYS1087
ASER1090
AARG1144
BARG544
BHIS583
BSER608
BLEU610
AHIS583
BASP645
BALA646
BALA647
BASN678
BILE680
BHIS1017
BTHR1035
BARG1051
BLYS1087
BSER1090
ASER608
BARG1144
CARG544
CHIS583
CSER608
CLEU610
CASP645
CALA646
CALA647
CASN678
CILE680
ALEU610
CHIS1017
CTHR1035
CARG1051
CLYS1087
CSER1090
CARG1144
DARG544
DHIS583
DSER608
DLEU610
AASP645
DASP645
DALA646
DALA647
DASN678
DILE680
DHIS1017
DTHR1035
DARG1051
DLYS1087
DSER1090
AALA646
DARG1144
EARG544
EHIS583
ESER608
ELEU610
EASP645
EALA646
EALA647
EASN678
EILE680
AALA647
EHIS1017
ETHR1035
EARG1051
ELYS1087
ESER1090
EARG1144
FARG544
FHIS583
FSER608
FLEU610
AASN678
FASP645
FALA646
FALA647
FASN678
FILE680
FHIS1017
FTHR1035
FARG1051
FLYS1087
FSER1090
AILE680
FARG1144

222926

PDB entries from 2024-07-24

PDB statisticsPDBj update infoContact PDBjnumon