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8P09

48S late-stage initiation complex with non methylated mRNA

Functional Information from GO Data
ChainGOidnamespacecontents
a0003735molecular_functionstructural constituent of ribosome
a0005840cellular_componentribosome
a0022626cellular_componentcytosolic ribosome
a1990904cellular_componentribonucleoprotein complex
A0003743molecular_functiontranslation initiation factor activity
A0005737cellular_componentcytoplasm
A0005850cellular_componenteukaryotic translation initiation factor 2 complex
A0006412biological_processtranslation
A0006413biological_processtranslational initiation
A0010494cellular_componentcytoplasmic stress granule
A0033290cellular_componenteukaryotic 48S preinitiation complex
A0043022molecular_functionribosome binding
b0003729molecular_functionmRNA binding
b0003735molecular_functionstructural constituent of ribosome
b0005737cellular_componentcytoplasm
b0005783cellular_componentendoplasmic reticulum
b0005791cellular_componentrough endoplasmic reticulum
b0005829cellular_componentcytosol
b0005840cellular_componentribosome
b0022626cellular_componentcytosolic ribosome
b0022627cellular_componentcytosolic small ribosomal subunit
b1990904cellular_componentribonucleoprotein complex
c0000028biological_processribosomal small subunit assembly
c0003723molecular_functionRNA binding
c0003735molecular_functionstructural constituent of ribosome
c0005634cellular_componentnucleus
c0005730cellular_componentnucleolus
c0005737cellular_componentcytoplasm
c0005840cellular_componentribosome
c0022626cellular_componentcytosolic ribosome
c0022627cellular_componentcytosolic small ribosomal subunit
c0046872molecular_functionmetal ion binding
c1990904cellular_componentribonucleoprotein complex
d0000028biological_processribosomal small subunit assembly
d0002181biological_processcytoplasmic translation
d0003735molecular_functionstructural constituent of ribosome
d0005634cellular_componentnucleus
d0005730cellular_componentnucleolus
d0005737cellular_componentcytoplasm
d0005783cellular_componentendoplasmic reticulum
d0005791cellular_componentrough endoplasmic reticulum
d0005829cellular_componentcytosol
d0005840cellular_componentribosome
d0006364biological_processrRNA processing
d0022626cellular_componentcytosolic ribosome
d0022627cellular_componentcytosolic small ribosomal subunit
d0030490biological_processmaturation of SSU-rRNA
d0032040cellular_componentsmall-subunit processome
d0042254biological_processribosome biogenesis
d0042274biological_processribosomal small subunit biogenesis
d0045202cellular_componentsynapse
d1990904cellular_componentribonucleoprotein complex
e0003735molecular_functionstructural constituent of ribosome
e0005737cellular_componentcytoplasm
e0005783cellular_componentendoplasmic reticulum
e0005791cellular_componentrough endoplasmic reticulum
e0005829cellular_componentcytosol
e0005840cellular_componentribosome
e0008270molecular_functionzinc ion binding
e0022626cellular_componentcytosolic ribosome
e0022627cellular_componentcytosolic small ribosomal subunit
e0046872molecular_functionmetal ion binding
e1990904cellular_componentribonucleoprotein complex
F0003677molecular_functionDNA binding
F0003723molecular_functionRNA binding
F0003735molecular_functionstructural constituent of ribosome
F0003906molecular_functionDNA-(apurinic or apyrimidinic site) endonuclease activity
F0005634cellular_componentnucleus
F0005730cellular_componentnucleolus
F0005737cellular_componentcytoplasm
F0005739cellular_componentmitochondrion
F0005743cellular_componentmitochondrial inner membrane
F0005819cellular_componentspindle
F0005840cellular_componentribosome
F0005856cellular_componentcytoskeleton
F0006281biological_processDNA repair
F0006417biological_processregulation of translation
F0006915biological_processapoptotic process
F0016829molecular_functionlyase activity
F0022626cellular_componentcytosolic ribosome
F0022627cellular_componentcytosolic small ribosomal subunit
F0031334biological_processpositive regulation of protein-containing complex assembly
F0045202cellular_componentsynapse
F0051301biological_processcell division
F0140078molecular_functionclass I DNA-(apurinic or apyrimidinic site) endonuclease activity
F1990904cellular_componentribonucleoprotein complex
F2001235biological_processpositive regulation of apoptotic signaling pathway
g0001891cellular_componentphagocytic cup
g0001934biological_processpositive regulation of protein phosphorylation
g0005080molecular_functionprotein kinase C binding
g0005634cellular_componentnucleus
g0005737cellular_componentcytoplasm
g0005829cellular_componentcytosol
g0005840cellular_componentribosome
g0005886cellular_componentplasma membrane
g0006417biological_processregulation of translation
g0006915biological_processapoptotic process
g0007369biological_processgastrulation
g0030425cellular_componentdendrite
g0042995cellular_componentcell projection
g0043022molecular_functionribosome binding
g0043204cellular_componentperikaryon
g0048471cellular_componentperinuclear region of cytoplasm
g0048511biological_processrhythmic process
g0072344biological_processrescue of stalled ribosome
g1990904cellular_componentribonucleoprotein complex
G0003723molecular_functionRNA binding
G0003735molecular_functionstructural constituent of ribosome
G0005634cellular_componentnucleus
G0005730cellular_componentnucleolus
G0005737cellular_componentcytoplasm
G0005840cellular_componentribosome
G0006412biological_processtranslation
G0019843molecular_functionrRNA binding
G0022626cellular_componentcytosolic ribosome
G0022627cellular_componentcytosolic small ribosomal subunit
G1990904cellular_componentribonucleoprotein complex
i0005634cellular_componentnucleus
i0005737cellular_componentcytoplasm
i0005840cellular_componentribosome
i0022627cellular_componentcytosolic small ribosomal subunit
i1990904cellular_componentribonucleoprotein complex
I0005840cellular_componentribosome
I1990904cellular_componentribonucleoprotein complex
J0003735molecular_functionstructural constituent of ribosome
J0005634cellular_componentnucleus
J0005730cellular_componentnucleolus
J0005737cellular_componentcytoplasm
J0005813cellular_componentcentrosome
J0005840cellular_componentribosome
J0005856cellular_componentcytoskeleton
J0006364biological_processrRNA processing
J0022626cellular_componentcytosolic ribosome
J0022627cellular_componentcytosolic small ribosomal subunit
J0030686cellular_component90S preribosome
J0032040cellular_componentsmall-subunit processome
J0042274biological_processribosomal small subunit biogenesis
J1990904cellular_componentribonucleoprotein complex
k0000054biological_processribosomal subunit export from nucleus
k0005506molecular_functioniron ion binding
k0005524molecular_functionATP binding
k0006413biological_processtranslational initiation
k0006415biological_processtranslational termination
k0043024molecular_functionribosomal small subunit binding
K0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
K0003735molecular_functionstructural constituent of ribosome
K0005634cellular_componentnucleus
K0005730cellular_componentnucleolus
K0005737cellular_componentcytoplasm
K0005840cellular_componentribosome
K0016020cellular_componentmembrane
K0022626cellular_componentcytosolic ribosome
K0022627cellular_componentcytosolic small ribosomal subunit
K1990904cellular_componentribonucleoprotein complex
l0005737cellular_componentcytoplasm
l0005840cellular_componentribosome
l1990904cellular_componentribonucleoprotein complex
L0003735molecular_functionstructural constituent of ribosome
L0005634cellular_componentnucleus
L0005730cellular_componentnucleolus
L0005737cellular_componentcytoplasm
L0005840cellular_componentribosome
L0019843molecular_functionrRNA binding
L0022626cellular_componentcytosolic ribosome
L0022627cellular_componentcytosolic small ribosomal subunit
L0042274biological_processribosomal small subunit biogenesis
L1990904cellular_componentribonucleoprotein complex
n0003735molecular_functionstructural constituent of ribosome
n0005634cellular_componentnucleus
n0005730cellular_componentnucleolus
n0005737cellular_componentcytoplasm
n0005840cellular_componentribosome
n0006364biological_processrRNA processing
n0014069cellular_componentpostsynaptic density
n0022626cellular_componentcytosolic ribosome
n0022627cellular_componentcytosolic small ribosomal subunit
n0042274biological_processribosomal small subunit biogenesis
n0045202cellular_componentsynapse
n1990904cellular_componentribonucleoprotein complex
N0003735molecular_functionstructural constituent of ribosome
N0005634cellular_componentnucleus
N0005730cellular_componentnucleolus
N0005737cellular_componentcytoplasm
N0005840cellular_componentribosome
N0019843molecular_functionrRNA binding
N0022626cellular_componentcytosolic ribosome
N0022627cellular_componentcytosolic small ribosomal subunit
N1990904cellular_componentribonucleoprotein complex
O0003735molecular_functionstructural constituent of ribosome
O0005634cellular_componentnucleus
O0005730cellular_componentnucleolus
O0005737cellular_componentcytoplasm
O0005794cellular_componentGolgi apparatus
O0005829cellular_componentcytosol
O0005840cellular_componentribosome
O0022626cellular_componentcytosolic ribosome
O0022627cellular_componentcytosolic small ribosomal subunit
O0032040cellular_componentsmall-subunit processome
O0042274biological_processribosomal small subunit biogenesis
O0043231cellular_componentintracellular membrane-bounded organelle
O0090263biological_processpositive regulation of canonical Wnt signaling pathway
O1990904cellular_componentribonucleoprotein complex
P0003735molecular_functionstructural constituent of ribosome
P0005634cellular_componentnucleus
P0005730cellular_componentnucleolus
P0005737cellular_componentcytoplasm
P0005840cellular_componentribosome
P0022626cellular_componentcytosolic ribosome
P0022627cellular_componentcytosolic small ribosomal subunit
P0070181molecular_functionsmall ribosomal subunit rRNA binding
P1990904cellular_componentribonucleoprotein complex
Q0000028biological_processribosomal small subunit assembly
Q0005634cellular_componentnucleus
Q0005730cellular_componentnucleolus
Q0005737cellular_componentcytoplasm
Q0005840cellular_componentribosome
Q0022627cellular_componentcytosolic small ribosomal subunit
Q1990904cellular_componentribonucleoprotein complex
R0000028biological_processribosomal small subunit assembly
R0000056biological_processribosomal small subunit export from nucleus
R0003735molecular_functionstructural constituent of ribosome
R0005737cellular_componentcytoplasm
R0005840cellular_componentribosome
R0006364biological_processrRNA processing
R0022626cellular_componentcytosolic ribosome
R0022627cellular_componentcytosolic small ribosomal subunit
R0042274biological_processribosomal small subunit biogenesis
R0097371molecular_functionMDM2/MDM4 family protein binding
R1901798biological_processpositive regulation of signal transduction by p53 class mediator
R1990904cellular_componentribonucleoprotein complex
R1990948molecular_functionubiquitin ligase inhibitor activity
S0000462biological_processmaturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
S0003723molecular_functionRNA binding
S0003735molecular_functionstructural constituent of ribosome
S0005634cellular_componentnucleus
S0005730cellular_componentnucleolus
S0005737cellular_componentcytoplasm
S0005840cellular_componentribosome
S0006364biological_processrRNA processing
S0022626cellular_componentcytosolic ribosome
S0022627cellular_componentcytosolic small ribosomal subunit
S0032040cellular_componentsmall-subunit processome
S0042274biological_processribosomal small subunit biogenesis
S0045202cellular_componentsynapse
S1990830biological_processcellular response to leukemia inhibitory factor
S1990904cellular_componentribonucleoprotein complex
T0003735molecular_functionstructural constituent of ribosome
T0005634cellular_componentnucleus
T0005730cellular_componentnucleolus
T0005737cellular_componentcytoplasm
T0005840cellular_componentribosome
T0022626cellular_componentcytosolic ribosome
T1990904cellular_componentribonucleoprotein complex
U0003735molecular_functionstructural constituent of ribosome
U0005737cellular_componentcytoplasm
U0005829cellular_componentcytosol
U0005840cellular_componentribosome
U0015935cellular_componentsmall ribosomal subunit
U0019843molecular_functionrRNA binding
U0022626cellular_componentcytosolic ribosome
U1990904cellular_componentribonucleoprotein complex
V0000028biological_processribosomal small subunit assembly
V0003723molecular_functionRNA binding
V0003735molecular_functionstructural constituent of ribosome
V0005634cellular_componentnucleus
V0005730cellular_componentnucleolus
V0005737cellular_componentcytoplasm
V0005840cellular_componentribosome
V0022626cellular_componentcytosolic ribosome
V0022627cellular_componentcytosolic small ribosomal subunit
V1990904cellular_componentribonucleoprotein complex
W0003735molecular_functionstructural constituent of ribosome
W0005737cellular_componentcytoplasm
W0005840cellular_componentribosome
W0022626cellular_componentcytosolic ribosome
W0022627cellular_componentcytosolic small ribosomal subunit
W1990904cellular_componentribonucleoprotein complex
X0000447biological_processendonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
X0000461biological_processendonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
X0002181biological_processcytoplasmic translation
X0003735molecular_functionstructural constituent of ribosome
X0005737cellular_componentcytoplasm
X0005783cellular_componentendoplasmic reticulum
X0005791cellular_componentrough endoplasmic reticulum
X0005829cellular_componentcytosol
X0005840cellular_componentribosome
X0022627cellular_componentcytosolic small ribosomal subunit
X1990904cellular_componentribonucleoprotein complex
Y0003735molecular_functionstructural constituent of ribosome
Y0005634cellular_componentnucleus
Y0005730cellular_componentnucleolus
Y0005737cellular_componentcytoplasm
Y0005840cellular_componentribosome
Y0022626cellular_componentcytosolic ribosome
Y0022627cellular_componentcytosolic small ribosomal subunit
Y1990904cellular_componentribonucleoprotein complex
Z0003735molecular_functionstructural constituent of ribosome
Z0005634cellular_componentnucleus
Z0005730cellular_componentnucleolus
Z0005737cellular_componentcytoplasm
Z0005783cellular_componentendoplasmic reticulum
Z0005791cellular_componentrough endoplasmic reticulum
Z0005829cellular_componentcytosol
Z0005840cellular_componentribosome
Z0006412biological_processtranslation
Z0022626cellular_componentcytosolic ribosome
Z0022627cellular_componentcytosolic small ribosomal subunit
Z1990904cellular_componentribonucleoprotein complex
Functional Information from PROSITE/UniProt
site_idPS00052
Number of Residues27
DetailsRIBOSOMAL_S7 Ribosomal protein S7 signature. ErLtnsMMmhgrnnGKKlmtvrIVkhA
ChainResidueDetails
HGLU85-ALA111

site_idPS00053
Number of Residues18
DetailsRIBOSOMAL_S8 Ribosomal protein S8 signature. GfiVLTTSaGIMdheeAR
ChainResidueDetails
YGLY100-ARG117

site_idPS00054
Number of Residues23
DetailsRIBOSOMAL_S11 Ribosomal protein S11 signature. LrALarS.GMkIgrieDvTPiPSD
ChainResidueDetails
QLEU116-ASP138

site_idPS00055
Number of Residues8
DetailsRIBOSOMAL_S12 Ribosomal protein S12 signature. KqPNSAiR
ChainResidueDetails
ZLYS60-ARG67

site_idPS00056
Number of Residues13
DetailsRIBOSOMAL_S17 Ribosomal protein S17 signature. GDiVtVgEcRPLS
ChainResidueDetails
NGLY123-SER135

site_idPS00198
Number of Residues12
Details4FE4S_FER_1 4Fe-4S ferredoxin-type iron-sulfur binding region signature. CiGCGiCIkKCP
ChainResidueDetails
kCYS55-PRO66

site_idPS00211
Number of Residues15
DetailsABC_TRANSPORTER_1 ABC transporters family signature. LSGGELQRVALALCL
ChainResidueDetails
kLEU462-LEU476

site_idPS00299
Number of Residues26
DetailsUBIQUITIN_1 Ubiquitin domain signature. KahVaSlegIApedQvVLLaGtpleD
ChainResidueDetails
iLYS25-ASP50

site_idPS00323
Number of Residues25
DetailsRIBOSOMAL_S19 Ribosomal protein S19 signature. NGKtfnqveIkpemIGhyLGEFsiT
ChainResidueDetails
RASN98-THR122

site_idPS00360
Number of Residues19
DetailsRIBOSOMAL_S9 Ribosomal protein S9 signature. GGGhvAQiyAirqSiSKAL
ChainResidueDetails
SGLY74-LEU92

site_idPS00361
Number of Residues16
DetailsRIBOSOMAL_S10 Ribosomal protein S10 signature. AkekNLkvkGPVrMPT
ChainResidueDetails
WALA43-THR58

site_idPS00362
Number of Residues31
DetailsRIBOSOMAL_S15 Ribosomal protein S15 signature. VrkHLernRkDkdAkfrLilIesrihrLarY
ChainResidueDetails
PVAL98-TYR128

site_idPS00527
Number of Residues23
DetailsRIBOSOMAL_S14 Ribosomal protein S14 signature. RvCsnrhglirkyg.LNMCRqCFR
ChainResidueDetails
eARG22-ARG44

site_idPS00528
Number of Residues15
DetailsRIBOSOMAL_S4E Ribosomal protein S4e signature. HlKRVAaPkhWmLdK
ChainResidueDetails
GHIS8-LYS22

site_idPS00529
Number of Residues23
DetailsRIBOSOMAL_S24E Ribosomal protein S24e signature. FGggKTtGFGmIYDSldyakknE
ChainResidueDetails
aPHE64-GLU86

site_idPS00548
Number of Residues37
DetailsRIBOSOMAL_S3 Ribosomal protein S3 signature. AKsmkfvdGlMihSgdpVnyyVDtavrhvlLrqGvlG
ChainResidueDetails
FALA147-GLY183

site_idPS00578
Number of Residues12
DetailsRIBOSOMAL_S6E Ribosomal protein S6e signature. ISGGnDkqGfPM
ChainResidueDetails
IILE52-MET63

site_idPS00628
Number of Residues20
DetailsRIBOSOMAL_S19E Ribosomal protein S19e signature. PshfsrgSksVaRrVLQaLE
ChainResidueDetails
VPRO89-GLU108

site_idPS00632
Number of Residues25
DetailsRIBOSOMAL_S4 Ribosomal protein S4 signature. LErRLqtqVFKlglAkSihhARvLI
ChainResidueDetails
LLEU106-ILE130

site_idPS00646
Number of Residues14
DetailsRIBOSOMAL_S13_1 Ribosomal protein S13 signature. RGlRHfwGlrVRGQ
ChainResidueDetails
UARG121-GLN134

site_idPS00678
Number of Residues15
DetailsWD_REPEATS_1 Trp-Asp (WD) repeats signature. ALSGswDgTLRLWDL
ChainResidueDetails
gALA78-LEU92
gILE120-THR134
gILE165-LEU179
gCYS207-LEU221

site_idPS00712
Number of Residues16
DetailsRIBOSOMAL_S17E Ribosomal protein S17e signature. IpSKkLRNkIAGYvTH
ChainResidueDetails
TILE41-HIS56

site_idPS00733
Number of Residues8
DetailsRIBOSOMAL_S26E Ribosomal protein S26e signature. YCVSCAIH
ChainResidueDetails
bTYR73-HIS80

site_idPS00948
Number of Residues14
DetailsRIBOSOMAL_S7E Ribosomal protein S7e signature. RLvRELEKKFSgKH
ChainResidueDetails
JARG78-HIS91

site_idPS00961
Number of Residues9
DetailsRIBOSOMAL_S28E Ribosomal protein S28e signature. ESEREARrL
ChainResidueDetails
dGLU60-LEU68

site_idPS00962
Number of Residues12
DetailsRIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. VlKFLAAGTHLG
ChainResidueDetails
CVAL15-GLY26

site_idPS00963
Number of Residues25
DetailsRIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PrlLVVtDpraDhqpLtEasyvNLP
ChainResidueDetails
CPRO119-PRO143

site_idPS00996
Number of Residues9
DetailsRIBOSOMAL_S21E Ribosomal protein S21e signature. LYVPRKCSA
ChainResidueDetails
XLEU11-ALA19

site_idPS01168
Number of Residues33
DetailsRIBOSOMAL_S27E Ribosomal protein S27e signature. KCpgCykittvFShAqtvvlCvgCStvLcqPtG
ChainResidueDetails
cLYS36-GLY68

site_idPS01189
Number of Residues19
DetailsRIBOSOMAL_S12E Ribosomal protein S12e signature. ALQevLktAlihDGLarGI
ChainResidueDetails
OALA17-ILE35

site_idPS01191
Number of Residues13
DetailsRIBOSOMAL_S3AE Ribosomal protein S3Ae signature. LkGRVfEvSLaDL
ChainResidueDetails
DLEU62-LEU74

site_idPS01193
Number of Residues20
DetailsRIBOSOMAL_S8E Ribosomal protein S8e signature. RrkTGGkrkpy.HkKrKyELG
ChainResidueDetails
KARG11-GLY30

site_idPS01262
Number of Residues23
DetailsIF1A Eukaryotic initiation factor 1A signature. MlGnGRleamCfDGvkRlcHIrG
ChainResidueDetails
jMET41-GLY63

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P62702
ChainResidueDetails
GLYS233
FASP32
FLEU182
FGLY183
FLEU204

site_idSWS_FT_FI2
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0000250|UniProtKB:P62701
ChainResidueDetails
GLYS230
nLYS94
cCYS56
cCYS59

site_idSWS_FT_FI3
Number of Residues3
DetailsMOD_RES: Asymmetric dimethylarginine => ECO:0000250|UniProtKB:P23396
ChainResidueDetails
FTHR26
FARG27
FLEU29
QLYS106

site_idSWS_FT_FI4
Number of Residues3
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P23396
ChainResidueDetails
FILE66
FALA171
FVAL186

site_idSWS_FT_FI5
Number of Residues1
DetailsMOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:P62908
ChainResidueDetails
FARG94
gASP171
gLYS172

site_idSWS_FT_FI6
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P23396
ChainResidueDetails
FALA52
FVAL164

site_idSWS_FT_FI7
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0000250|UniProtKB:P23396
ChainResidueDetails
CLYS89
FTRP192

site_idSWS_FT_FI8
Number of Residues1
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000250|UniProtKB:P23396
ChainResidueDetails
FLEU176

219515

PDB entries from 2024-05-08

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