8OM2

Small subunit of yeast mitochondrial ribosome in complex with METTL17/Rsm22.

This is a non-PDB format compatible entry.

Functional Information from GO Data

Chain	GOid	namespace	contents
1	0003735	molecular_function	structural constituent of ribosome
1	0005739	cellular_component	mitochondrion
1	0005743	cellular_component	mitochondrial inner membrane
1	0005763	cellular_component	mitochondrial small ribosomal subunit
1	0005840	cellular_component	ribosome
1	0006397	biological_process	mRNA processing
1	0032543	biological_process	mitochondrial translation
1	0061668	biological_process	mitochondrial ribosome assembly
1	0070124	biological_process	mitochondrial translational initiation
1	1990904	cellular_component	ribonucleoprotein complex
2	0003735	molecular_function	structural constituent of ribosome
2	0005739	cellular_component	mitochondrion
2	0005743	cellular_component	mitochondrial inner membrane
2	0005763	cellular_component	mitochondrial small ribosomal subunit
2	0005840	cellular_component	ribosome
2	0032543	biological_process	mitochondrial translation
2	1990904	cellular_component	ribonucleoprotein complex
3	0003735	molecular_function	structural constituent of ribosome
3	0004784	molecular_function	superoxide dismutase activity
3	0005515	molecular_function	protein binding
3	0005737	cellular_component	cytoplasm
3	0005739	cellular_component	mitochondrion
3	0005743	cellular_component	mitochondrial inner membrane
3	0005763	cellular_component	mitochondrial small ribosomal subunit
3	0005840	cellular_component	ribosome
3	0006801	biological_process	superoxide metabolic process
3	0019430	biological_process	removal of superoxide radicals
3	0032543	biological_process	mitochondrial translation
3	0046872	molecular_function	metal ion binding
3	1990904	cellular_component	ribonucleoprotein complex
4	0003735	molecular_function	structural constituent of ribosome
4	0004784	molecular_function	superoxide dismutase activity
4	0005515	molecular_function	protein binding
4	0005737	cellular_component	cytoplasm
4	0005739	cellular_component	mitochondrion
4	0005743	cellular_component	mitochondrial inner membrane
4	0005763	cellular_component	mitochondrial small ribosomal subunit
4	0005840	cellular_component	ribosome
4	0006801	biological_process	superoxide metabolic process
4	0019430	biological_process	removal of superoxide radicals
4	0032543	biological_process	mitochondrial translation
4	0046872	molecular_function	metal ion binding
4	1990904	cellular_component	ribonucleoprotein complex
5	0003735	molecular_function	structural constituent of ribosome
5	0005515	molecular_function	protein binding
5	0005739	cellular_component	mitochondrion
5	0005743	cellular_component	mitochondrial inner membrane
5	0005763	cellular_component	mitochondrial small ribosomal subunit
5	0005840	cellular_component	ribosome
5	0032543	biological_process	mitochondrial translation
5	1990904	cellular_component	ribonucleoprotein complex
6	0003735	molecular_function	structural constituent of ribosome
6	0005515	molecular_function	protein binding
6	0005739	cellular_component	mitochondrion
6	0005743	cellular_component	mitochondrial inner membrane
6	0005763	cellular_component	mitochondrial small ribosomal subunit
6	0005840	cellular_component	ribosome
6	0032543	biological_process	mitochondrial translation
6	1990904	cellular_component	ribonucleoprotein complex
8	0003735	molecular_function	structural constituent of ribosome
8	0003824	molecular_function	catalytic activity
8	0003860	molecular_function	3-hydroxyisobutyryl-CoA hydrolase activity
8	0005515	molecular_function	protein binding
8	0005739	cellular_component	mitochondrion
8	0005743	cellular_component	mitochondrial inner membrane
8	0005763	cellular_component	mitochondrial small ribosomal subunit
8	0005840	cellular_component	ribosome
8	0006574	biological_process	L-valine catabolic process
8	0009083	biological_process	branched-chain amino acid catabolic process
8	0016787	molecular_function	hydrolase activity
8	0032543	biological_process	mitochondrial translation
8	1990904	cellular_component	ribonucleoprotein complex
A	0003735	molecular_function	structural constituent of ribosome
A	0005515	molecular_function	protein binding
A	0005739	cellular_component	mitochondrion
A	0005743	cellular_component	mitochondrial inner membrane
A	0005763	cellular_component	mitochondrial small ribosomal subunit
A	0005840	cellular_component	ribosome
A	0032543	biological_process	mitochondrial translation
A	0070124	biological_process	mitochondrial translational initiation
A	1990904	cellular_component	ribonucleoprotein complex
B	0003735	molecular_function	structural constituent of ribosome
B	0005515	molecular_function	protein binding
B	0005739	cellular_component	mitochondrion
B	0005743	cellular_component	mitochondrial inner membrane
B	0005763	cellular_component	mitochondrial small ribosomal subunit
B	0005840	cellular_component	ribosome
B	0006412	biological_process	translation
B	0015935	cellular_component	small ribosomal subunit
B	0032543	biological_process	mitochondrial translation
B	1990904	cellular_component	ribonucleoprotein complex
C	0003735	molecular_function	structural constituent of ribosome
C	0005739	cellular_component	mitochondrion
C	0005743	cellular_component	mitochondrial inner membrane
C	0005761	cellular_component	mitochondrial ribosome
C	0005763	cellular_component	mitochondrial small ribosomal subunit
C	0005840	cellular_component	ribosome
C	0006412	biological_process	translation
C	0032543	biological_process	mitochondrial translation
C	1990904	cellular_component	ribonucleoprotein complex
D	0003723	molecular_function	RNA binding
D	0003735	molecular_function	structural constituent of ribosome
D	0005515	molecular_function	protein binding
D	0005739	cellular_component	mitochondrion
D	0005743	cellular_component	mitochondrial inner membrane
D	0005763	cellular_component	mitochondrial small ribosomal subunit
D	0005840	cellular_component	ribosome
D	0019843	molecular_function	rRNA binding
D	0032543	biological_process	mitochondrial translation
D	0042274	biological_process	ribosomal small subunit biogenesis
D	1990904	cellular_component	ribonucleoprotein complex
E	0003723	molecular_function	RNA binding
E	0003735	molecular_function	structural constituent of ribosome
E	0005515	molecular_function	protein binding
E	0005739	cellular_component	mitochondrion
E	0005743	cellular_component	mitochondrial inner membrane
E	0005763	cellular_component	mitochondrial small ribosomal subunit
E	0005840	cellular_component	ribosome
E	0006412	biological_process	translation
E	0032543	biological_process	mitochondrial translation
E	1990904	cellular_component	ribonucleoprotein complex
F	0003735	molecular_function	structural constituent of ribosome
F	0005515	molecular_function	protein binding
F	0005737	cellular_component	cytoplasm
F	0005739	cellular_component	mitochondrion
F	0005743	cellular_component	mitochondrial inner membrane
F	0005763	cellular_component	mitochondrial small ribosomal subunit
F	0005840	cellular_component	ribosome
F	0006412	biological_process	translation
F	0019843	molecular_function	rRNA binding
F	0032543	biological_process	mitochondrial translation
F	0070181	molecular_function	small ribosomal subunit rRNA binding
F	1990904	cellular_component	ribonucleoprotein complex
G	0003723	molecular_function	RNA binding
G	0003729	molecular_function	mRNA binding
G	0003735	molecular_function	structural constituent of ribosome
G	0005515	molecular_function	protein binding
G	0005739	cellular_component	mitochondrion
G	0005743	cellular_component	mitochondrial inner membrane
G	0005763	cellular_component	mitochondrial small ribosomal subunit
G	0005840	cellular_component	ribosome
G	0006412	biological_process	translation
G	0019843	molecular_function	rRNA binding
G	0032543	biological_process	mitochondrial translation
G	1990904	cellular_component	ribonucleoprotein complex
H	0003735	molecular_function	structural constituent of ribosome
H	0005515	molecular_function	protein binding
H	0005739	cellular_component	mitochondrion
H	0005743	cellular_component	mitochondrial inner membrane
H	0005763	cellular_component	mitochondrial small ribosomal subunit
H	0005840	cellular_component	ribosome
H	0006412	biological_process	translation
H	0032543	biological_process	mitochondrial translation
H	1990904	cellular_component	ribonucleoprotein complex
I	0003723	molecular_function	RNA binding
I	0003735	molecular_function	structural constituent of ribosome
I	0005515	molecular_function	protein binding
I	0005737	cellular_component	cytoplasm
I	0005739	cellular_component	mitochondrion
I	0005743	cellular_component	mitochondrial inner membrane
I	0005763	cellular_component	mitochondrial small ribosomal subunit
I	0005840	cellular_component	ribosome
I	0006412	biological_process	translation
I	0015935	cellular_component	small ribosomal subunit
I	0032543	biological_process	mitochondrial translation
I	1990904	cellular_component	ribonucleoprotein complex
J	0003735	molecular_function	structural constituent of ribosome
J	0005515	molecular_function	protein binding
J	0005739	cellular_component	mitochondrion
J	0005743	cellular_component	mitochondrial inner membrane
J	0005763	cellular_component	mitochondrial small ribosomal subunit
J	0005840	cellular_component	ribosome
J	0006412	biological_process	translation
J	0015935	cellular_component	small ribosomal subunit
J	0032543	biological_process	mitochondrial translation
J	1990904	cellular_component	ribonucleoprotein complex
K	0003735	molecular_function	structural constituent of ribosome
K	0005515	molecular_function	protein binding
K	0005739	cellular_component	mitochondrion
K	0005743	cellular_component	mitochondrial inner membrane
K	0005763	cellular_component	mitochondrial small ribosomal subunit
K	0005840	cellular_component	ribosome
K	0006412	biological_process	translation
K	0032543	biological_process	mitochondrial translation
K	1990904	cellular_component	ribonucleoprotein complex
L	0003735	molecular_function	structural constituent of ribosome
L	0005515	molecular_function	protein binding
L	0005739	cellular_component	mitochondrion
L	0005743	cellular_component	mitochondrial inner membrane
L	0005763	cellular_component	mitochondrial small ribosomal subunit
L	0005840	cellular_component	ribosome
L	0006412	biological_process	translation
L	0015935	cellular_component	small ribosomal subunit
L	0032543	biological_process	mitochondrial translation
L	1990904	cellular_component	ribonucleoprotein complex
M	0003676	molecular_function	nucleic acid binding
M	0003723	molecular_function	RNA binding
M	0003735	molecular_function	structural constituent of ribosome
M	0005515	molecular_function	protein binding
M	0005739	cellular_component	mitochondrion
M	0005743	cellular_component	mitochondrial inner membrane
M	0005763	cellular_component	mitochondrial small ribosomal subunit
M	0005777	cellular_component	peroxisome
M	0005840	cellular_component	ribosome
M	0006412	biological_process	translation
M	0015935	cellular_component	small ribosomal subunit
M	0032543	biological_process	mitochondrial translation
M	1990904	cellular_component	ribonucleoprotein complex
N	0003735	molecular_function	structural constituent of ribosome
N	0005737	cellular_component	cytoplasm
N	0005739	cellular_component	mitochondrion
N	0005743	cellular_component	mitochondrial inner membrane
N	0005763	cellular_component	mitochondrial small ribosomal subunit
N	0005840	cellular_component	ribosome
N	0006412	biological_process	translation
N	0032543	biological_process	mitochondrial translation
N	1990904	cellular_component	ribonucleoprotein complex
O	0003723	molecular_function	RNA binding
O	0003735	molecular_function	structural constituent of ribosome
O	0005515	molecular_function	protein binding
O	0005737	cellular_component	cytoplasm
O	0005739	cellular_component	mitochondrion
O	0005743	cellular_component	mitochondrial inner membrane
O	0005763	cellular_component	mitochondrial small ribosomal subunit
O	0005840	cellular_component	ribosome
O	0006412	biological_process	translation
O	0019843	molecular_function	rRNA binding
O	0032543	biological_process	mitochondrial translation
O	1990904	cellular_component	ribonucleoprotein complex
P	0003735	molecular_function	structural constituent of ribosome
P	0005515	molecular_function	protein binding
P	0005737	cellular_component	cytoplasm
P	0005739	cellular_component	mitochondrion
P	0005743	cellular_component	mitochondrial inner membrane
P	0005763	cellular_component	mitochondrial small ribosomal subunit
P	0005840	cellular_component	ribosome
P	0006412	biological_process	translation
P	0032543	biological_process	mitochondrial translation
P	1990904	cellular_component	ribonucleoprotein complex
Q	0003723	molecular_function	RNA binding
Q	0003735	molecular_function	structural constituent of ribosome
Q	0005515	molecular_function	protein binding
Q	0005739	cellular_component	mitochondrion
Q	0005743	cellular_component	mitochondrial inner membrane
Q	0005763	cellular_component	mitochondrial small ribosomal subunit
Q	0005840	cellular_component	ribosome
Q	0006412	biological_process	translation
Q	0019843	molecular_function	rRNA binding
Q	0030435	biological_process	sporulation resulting in formation of a cellular spore
Q	0032543	biological_process	mitochondrial translation
Q	1990904	cellular_component	ribonucleoprotein complex
R	0003735	molecular_function	structural constituent of ribosome
R	0005515	molecular_function	protein binding
R	0005739	cellular_component	mitochondrion
R	0005743	cellular_component	mitochondrial inner membrane
R	0005763	cellular_component	mitochondrial small ribosomal subunit
R	0005840	cellular_component	ribosome
R	0006412	biological_process	translation
R	0032543	biological_process	mitochondrial translation
R	0070181	molecular_function	small ribosomal subunit rRNA binding
R	1990904	cellular_component	ribonucleoprotein complex
S	0003723	molecular_function	RNA binding
S	0003735	molecular_function	structural constituent of ribosome
S	0005515	molecular_function	protein binding
S	0005737	cellular_component	cytoplasm
S	0005739	cellular_component	mitochondrion
S	0005743	cellular_component	mitochondrial inner membrane
S	0005763	cellular_component	mitochondrial small ribosomal subunit
S	0005840	cellular_component	ribosome
S	0006412	biological_process	translation
S	0032543	biological_process	mitochondrial translation
S	1990904	cellular_component	ribonucleoprotein complex
T	0003735	molecular_function	structural constituent of ribosome
T	0005515	molecular_function	protein binding
T	0005739	cellular_component	mitochondrion
T	0005743	cellular_component	mitochondrial inner membrane
T	0005763	cellular_component	mitochondrial small ribosomal subunit
T	0005840	cellular_component	ribosome
T	0006412	biological_process	translation
T	0032543	biological_process	mitochondrial translation
T	0070124	biological_process	mitochondrial translational initiation
T	1990904	cellular_component	ribonucleoprotein complex
U	0003735	molecular_function	structural constituent of ribosome
U	0005515	molecular_function	protein binding
U	0005739	cellular_component	mitochondrion
U	0005743	cellular_component	mitochondrial inner membrane
U	0005763	cellular_component	mitochondrial small ribosomal subunit
U	0005840	cellular_component	ribosome
U	0032543	biological_process	mitochondrial translation
U	1990904	cellular_component	ribonucleoprotein complex
V	0003735	molecular_function	structural constituent of ribosome
V	0005515	molecular_function	protein binding
V	0005739	cellular_component	mitochondrion
V	0005743	cellular_component	mitochondrial inner membrane
V	0005763	cellular_component	mitochondrial small ribosomal subunit
V	0005840	cellular_component	ribosome
V	0032543	biological_process	mitochondrial translation
V	1990904	cellular_component	ribonucleoprotein complex
W	0000166	molecular_function	nucleotide binding
W	0003735	molecular_function	structural constituent of ribosome
W	0005515	molecular_function	protein binding
W	0005524	molecular_function	ATP binding
W	0005525	molecular_function	GTP binding
W	0005739	cellular_component	mitochondrion
W	0005743	cellular_component	mitochondrial inner membrane
W	0005763	cellular_component	mitochondrial small ribosomal subunit
W	0005840	cellular_component	ribosome
W	0032543	biological_process	mitochondrial translation
W	1990904	cellular_component	ribonucleoprotein complex
X	0003735	molecular_function	structural constituent of ribosome
X	0005515	molecular_function	protein binding
X	0005739	cellular_component	mitochondrion
X	0005743	cellular_component	mitochondrial inner membrane
X	0005763	cellular_component	mitochondrial small ribosomal subunit
X	0005840	cellular_component	ribosome
X	0032543	biological_process	mitochondrial translation
X	1990904	cellular_component	ribonucleoprotein complex
Y	0003735	molecular_function	structural constituent of ribosome
Y	0005515	molecular_function	protein binding
Y	0005739	cellular_component	mitochondrion
Y	0005743	cellular_component	mitochondrial inner membrane
Y	0005763	cellular_component	mitochondrial small ribosomal subunit
Y	0005840	cellular_component	ribosome
Y	0032543	biological_process	mitochondrial translation
Y	1990904	cellular_component	ribonucleoprotein complex
Z	0003735	molecular_function	structural constituent of ribosome
Z	0005515	molecular_function	protein binding
Z	0005739	cellular_component	mitochondrion
Z	0005743	cellular_component	mitochondrial inner membrane
Z	0005759	cellular_component	mitochondrial matrix
Z	0005763	cellular_component	mitochondrial small ribosomal subunit
Z	0005840	cellular_component	ribosome
Z	0032543	biological_process	mitochondrial translation
Z	1990904	cellular_component	ribonucleoprotein complex
c	0003735	molecular_function	structural constituent of ribosome
c	0005515	molecular_function	protein binding
c	0005739	cellular_component	mitochondrion
c	0005763	cellular_component	mitochondrial small ribosomal subunit
c	0006412	biological_process	translation
c	0008168	molecular_function	methyltransferase activity
c	0032543	biological_process	mitochondrial translation
c	0046872	molecular_function	metal ion binding
c	0051536	molecular_function	iron-sulfur cluster binding
c	0051539	molecular_function	4 iron, 4 sulfur cluster binding
c	0180026	biological_process	mitochondrial small ribosomal subunit assembly

Functional Information from PROSITE/UniProt

site_id	PS00032
Number of Residues	6
Details	ANTENNAPEDIA 'Homeobox' antennapedia-type protein signature. LYPWMR

Chain	Residue	Details
M	LEU41-ARG46

---

site_id	PS00052
Number of Residues	27
Details	RIBOSOMAL_S7 Ribosomal protein S7 signature. NaTldhITnmimrhGKKekaqtILsrA

Chain	Residue	Details
G	ASN111-ALA137

---

site_id	PS00055
Number of Residues	8
Details	RIBOSOMAL_S12 Ribosomal protein S12 signature. KkPNSAqR

Chain	Residue	Details
L	LYS71-ARG78

---

site_id	PS00166
Number of Residues	21
Details	ENOYL_COA_HYDRATASE Enoyl-CoA hydratase/isomerase signature. VTfMDGitmGGGvglsIhTPF

Chain	Residue	Details
8	VAL139-PHE159

---

site_id	PS00323
Number of Residues	25
Details	RIBOSOMAL_S19 Ribosomal protein S19 signature. NGKeyvpieIsedmVGhkLGEFapT

Chain	Residue	Details
S	ASN55-THR79

---

site_id	PS00360
Number of Residues	19
Details	RIBOSOMAL_S9 Ribosomal protein S9 signature. GGGptGQaeSimhAiAKAL

Chain	Residue	Details
I	GLY217-LEU235

---

site_id	PS00362
Number of Residues	31
Details	RIBOSOMAL_S15 Ribosomal protein S15 signature. ManHIkehRkDfaNtrnLriLvqqrqaIlrY

Chain	Residue	Details
O	MET188-TYR218

---

site_id	PS00527
Number of Residues	23
Details	RIBOSOMAL_S14 Ribosomal protein S14 signature. R.CvdsgharfvlsdFRLCRyQFR

Chain	Residue	Details
N	ARG77-ARG99

---

site_id	PS00585
Number of Residues	34
Details	RIBOSOMAL_S5 Ribosomal protein S5 signature. GKiasFyAlvVVGDkn.GmVGlGegksreEMsk.AI

Chain	Residue	Details
E	GLY161-ILE194

---

site_id	PS00632
Number of Residues	25
Details	RIBOSOMAL_S4 Ribosomal protein S4 signature. LEkRLdfaLFRamfAsSvrqARqFI

Chain	Residue	Details
D	LEU101-ILE125

---

site_id	PS00646
Number of Residues	14
Details	RIBOSOMAL_S13_1 Ribosomal protein S13 signature. SGmRHtlHlpVRGQ

Chain	Residue	Details
M	SER89-GLN102

---

site_id	PS00687
Number of Residues	8
Details	ALDEHYDE_DEHYDR_GLU Aldehyde dehydrogenases glutamic acid active site. AELSGLNT

Chain	Residue	Details
O	ALA113-THR120

---

site_id	PS00732
Number of Residues	10
Details	RIBOSOMAL_S16 Ribosomal protein S16 signature. VrIRLARFGR

Chain	Residue	Details
P	VAL6-ARG15

---

site_id	PS00962
Number of Residues	12
Details	RIBOSOMAL_S2_1 Ribosomal protein S2 signature 1. VeSLMSAGVHLG

Chain	Residue	Details
B	VAL185-GLY196

---

site_id	PS00963
Number of Residues	25
Details	RIBOSOMAL_S2_2 Ribosomal protein S2 signature 2. PdlLVVlNpteNrnaLlEaiksRVP

Chain	Residue	Details
B	PRO317-PRO341

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	69
Details	Domain: {"description":"S4 RNA-binding","evidences":[{"source":"PROSITE-ProRule","id":"PRU00182","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	64
Details	Domain: {"description":"S5 DRBM","evidences":[{"source":"PROSITE-ProRule","id":"PRU00268","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	1
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"18407956","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	1
Details	Binding site: {"evidences":[{"source":"UniProtKB","id":"Q7SD06","evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	28
Details	Compositional bias: {"description":"Basic residues","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	42
Details	Domain: {"description":"CHCH","evidences":[{"source":"PROSITE-ProRule","id":"PRU01150","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI7
Number of Residues	10
Details	Motif: {"description":"Cx9C motif 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU01150","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI8
Number of Residues	10
Details	Motif: {"description":"Cx9C motif 2","evidences":[{"source":"PROSITE-ProRule","id":"PRU01150","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI9
Number of Residues	4
Details	Binding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI10
Number of Residues	1
Details	Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"17761666","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI11
Number of Residues	4
Details	Binding site: {"evidences":[{"source":"PubMed","id":"36482135","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"38199006","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"8D8J","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8D8K","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8D8L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"8OM2","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---