Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

8KCC

Complex of DDM1-nucleosome(H2A.W) complex with DDM1 bound to SHL2

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000786	cellular_component	nucleosome
A	0000792	cellular_component	heterochromatin
A	0003677	molecular_function	DNA binding
A	0003682	molecular_function	chromatin binding
A	0005634	cellular_component	nucleus
A	0005694	cellular_component	chromosome
A	0005721	cellular_component	pericentric heterochromatin
A	0005730	cellular_component	nucleolus
A	0009506	cellular_component	plasmodesma
A	0009536	cellular_component	plastid
A	0030527	molecular_function	structural constituent of chromatin
A	0031507	biological_process	heterochromatin formation
A	0046982	molecular_function	protein heterodimerization activity
A	0070828	biological_process	heterochromatin organization
B	0000786	cellular_component	nucleosome
B	0000792	cellular_component	heterochromatin
B	0003677	molecular_function	DNA binding
B	0003682	molecular_function	chromatin binding
B	0005634	cellular_component	nucleus
B	0005694	cellular_component	chromosome
B	0005721	cellular_component	pericentric heterochromatin
B	0005730	cellular_component	nucleolus
B	0009506	cellular_component	plasmodesma
B	0009536	cellular_component	plastid
B	0030527	molecular_function	structural constituent of chromatin
B	0031507	biological_process	heterochromatin formation
B	0046982	molecular_function	protein heterodimerization activity
B	0070828	biological_process	heterochromatin organization
C	0000786	cellular_component	nucleosome
C	0003677	molecular_function	DNA binding
C	0005515	molecular_function	protein binding
C	0005634	cellular_component	nucleus
C	0005694	cellular_component	chromosome
C	0005730	cellular_component	nucleolus
C	0009536	cellular_component	plastid
C	0030527	molecular_function	structural constituent of chromatin
C	0046982	molecular_function	protein heterodimerization activity
D	0000786	cellular_component	nucleosome
D	0003677	molecular_function	DNA binding
D	0005515	molecular_function	protein binding
D	0005634	cellular_component	nucleus
D	0005694	cellular_component	chromosome
D	0005730	cellular_component	nucleolus
D	0009536	cellular_component	plastid
D	0030527	molecular_function	structural constituent of chromatin
D	0046982	molecular_function	protein heterodimerization activity
E	0000786	cellular_component	nucleosome
E	0003674	molecular_function	molecular_function
E	0003677	molecular_function	DNA binding
E	0005515	molecular_function	protein binding
E	0005576	cellular_component	extracellular region
E	0005634	cellular_component	nucleus
E	0005694	cellular_component	chromosome
E	0005829	cellular_component	cytosol
E	0005886	cellular_component	plasma membrane
E	0009536	cellular_component	plastid
E	0010369	cellular_component	chromocenter
E	0030527	molecular_function	structural constituent of chromatin
E	0046982	molecular_function	protein heterodimerization activity
F	0000786	cellular_component	nucleosome
F	0003674	molecular_function	molecular_function
F	0003677	molecular_function	DNA binding
F	0005515	molecular_function	protein binding
F	0005576	cellular_component	extracellular region
F	0005634	cellular_component	nucleus
F	0005694	cellular_component	chromosome
F	0005829	cellular_component	cytosol
F	0005886	cellular_component	plasma membrane
F	0009536	cellular_component	plastid
F	0010369	cellular_component	chromocenter
F	0030527	molecular_function	structural constituent of chromatin
F	0046982	molecular_function	protein heterodimerization activity
G	0000325	cellular_component	plant-type vacuole
G	0000786	cellular_component	nucleosome
G	0003674	molecular_function	molecular_function
G	0003677	molecular_function	DNA binding
G	0005515	molecular_function	protein binding
G	0005576	cellular_component	extracellular region
G	0005634	cellular_component	nucleus
G	0005694	cellular_component	chromosome
G	0005730	cellular_component	nucleolus
G	0005777	cellular_component	peroxisome
G	0005794	cellular_component	Golgi apparatus
G	0005829	cellular_component	cytosol
G	0005886	cellular_component	plasma membrane
G	0006334	biological_process	nucleosome assembly
G	0009414	biological_process	response to water deprivation
G	0009506	cellular_component	plasmodesma
G	0009507	cellular_component	chloroplast
G	0009536	cellular_component	plastid
G	0009579	cellular_component	thylakoid
G	0030527	molecular_function	structural constituent of chromatin
G	0046982	molecular_function	protein heterodimerization activity
H	0000325	cellular_component	plant-type vacuole
H	0000786	cellular_component	nucleosome
H	0003674	molecular_function	molecular_function
H	0003677	molecular_function	DNA binding
H	0005515	molecular_function	protein binding
H	0005576	cellular_component	extracellular region
H	0005634	cellular_component	nucleus
H	0005694	cellular_component	chromosome
H	0005730	cellular_component	nucleolus
H	0005777	cellular_component	peroxisome
H	0005794	cellular_component	Golgi apparatus
H	0005829	cellular_component	cytosol
H	0005886	cellular_component	plasma membrane
H	0006334	biological_process	nucleosome assembly
H	0009414	biological_process	response to water deprivation
H	0009506	cellular_component	plasmodesma
H	0009507	cellular_component	chloroplast
H	0009536	cellular_component	plastid
H	0009579	cellular_component	thylakoid
H	0030527	molecular_function	structural constituent of chromatin
H	0046982	molecular_function	protein heterodimerization activity
K	0000166	molecular_function	nucleotide binding
K	0000785	cellular_component	chromatin
K	0000786	cellular_component	nucleosome
K	0003677	molecular_function	DNA binding
K	0003678	molecular_function	DNA helicase activity
K	0003682	molecular_function	chromatin binding
K	0004386	molecular_function	helicase activity
K	0005515	molecular_function	protein binding
K	0005524	molecular_function	ATP binding
K	0005634	cellular_component	nucleus
K	0006338	biological_process	chromatin remodeling
K	0006346	biological_process	DNA methylation-dependent constitutive heterochromatin formation
K	0009294	biological_process	DNA-mediated transformation
K	0016787	molecular_function	hydrolase activity
K	0016887	molecular_function	ATP hydrolysis activity
K	0031507	biological_process	heterochromatin formation
K	0032197	biological_process	retrotransposition
K	0040029	biological_process	epigenetic regulation of gene expression
K	0045944	biological_process	positive regulation of transcription by RNA polymerase II
K	0140750	molecular_function	nucleosome array spacer activity

Functional Information from PROSITE/UniProt

site_id	PS00046
Number of Residues	7
Details	HISTONE_H2A Histone H2A signature. AGLqFPV

Chain	Residue	Details
A	ALA30-VAL36

site_id	PS00047
Number of Residues	5
Details	HISTONE_H4 Histone H4 signature. GAKRH

Chain	Residue	Details
G	GLY14-HIS18

site_id	PS00322
Number of Residues	7
Details	HISTONE_H3_1 Histone H3 signature 1. KAPRKQL

Chain	Residue	Details
E	LYS14-LEU20

site_id	PS00357
Number of Residues	23
Details	HISTONE_H2B Histone H2B signature. REIQTavRlVLpGELaKHAVSEG

Chain	Residue	Details
C	ARG112-GLY134

site_id	PS00959
Number of Residues	9
Details	HISTONE_H3_2 Histone H3 signature 2. PFqRLVREI

Chain	Residue	Details
E	PRO66-ILE74

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	1
Details	BINDING: BINDING => ECO:0000255\|PROSITE-ProRule:PRU00541

Chain	Residue	Details
K	ASP227
H	LYS16-LYS20

site_id	SWS_FT_FI2
Number of Residues	4
Details	SITE: Not N6-acetylated => ECO:0000269\|PubMed:15598823

Chain	Residue	Details
E	LYS27
D	LYS33
E	LYS36
F	LYS27
F	LYS36
C	LYS33
D	LYS5
D	LYS10
D	LYS15
D	LYS27

site_id	SWS_FT_FI3
Number of Residues	2
Details	SITE: Required for interaction with TSK => ECO:0000269\|PubMed:35298257

Chain	Residue	Details
E	ALA31
F	ALA31

site_id	SWS_FT_FI4
Number of Residues	2
Details	MOD_RES: N6-methyllysine; alternate => ECO:0000269\|PubMed:12581305, ECO:0000269\|PubMed:14712277, ECO:0000269\|PubMed:15598823, ECO:0000269\|PubMed:16258034

Chain	Residue	Details
E	LYS4
F	LYS4

site_id	SWS_FT_FI5
Number of Residues	2
Details	MOD_RES: N6-methyllysine; alternate => ECO:0000269\|PubMed:12456661, ECO:0000269\|PubMed:12581305, ECO:0000269\|PubMed:14712277, ECO:0000269\|PubMed:15014946, ECO:0000269\|PubMed:15598823

Chain	Residue	Details
E	LYS9
F	LYS9
D	LYS140

site_id	SWS_FT_FI6
Number of Residues	4
Details	MOD_RES: Phosphoserine => ECO:0000269\|PubMed:14610360, ECO:0000269\|PubMed:15753571

Chain	Residue	Details
E	SER10
E	SER28
F	SER10
F	SER28

site_id	SWS_FT_FI7
Number of Residues	2
Details	MOD_RES: Phosphothreonine => ECO:0000269\|PubMed:15753571

Chain	Residue	Details
E	THR11
F	THR11

site_id	SWS_FT_FI8
Number of Residues	2
Details	MOD_RES: N6-acetyllysine => ECO:0000269\|PubMed:15598823, ECO:0000269\|PubMed:16648464, ECO:0000269\|PubMed:17174094, ECO:0000269\|PubMed:17363895

Chain	Residue	Details
E	LYS14
F	LYS14

site_id	SWS_FT_FI9
Number of Residues	4
Details	MOD_RES: N6-methyllysine; alternate => ECO:0000269\|PubMed:15598823

Chain	Residue	Details
E	LYS18
E	LYS23
F	LYS18
F	LYS23

site_id	SWS_FT_FI10
Number of Residues	2
Details	MOD_RES: N6-methyllysine; alternate => ECO:0000269\|PubMed:14712277, ECO:0000269\|PubMed:15598823, ECO:0000269\|PubMed:17174094, ECO:0000269\|PubMed:17439305, ECO:0000269\|PubMed:19503079, ECO:0000269\|PubMed:24626927, ECO:0000269\|PubMed:35298257

Chain	Residue	Details
E	LYS27
F	LYS27

site_id	SWS_FT_FI11
Number of Residues	2
Details	MOD_RES: N6-methyllysine; alternate => ECO:0000269\|PubMed:15598823, ECO:0000269\|PubMed:16299497

Chain	Residue	Details
E	LYS36
F	LYS36

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)