8KCB

Complex of DDM1-nucleosome(H2A) complex with DDM1 bound to SHL2

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0000786	cellular_component	nucleosome
A	0003677	molecular_function	DNA binding
A	0005515	molecular_function	protein binding
A	0005634	cellular_component	nucleus
A	0005694	cellular_component	chromosome
A	0005730	cellular_component	nucleolus
A	0009294	biological_process	DNA-mediated transformation
A	0009536	cellular_component	plastid
A	0009611	biological_process	response to wounding
A	0009617	biological_process	response to bacterium
B	0000786	cellular_component	nucleosome
B	0003677	molecular_function	DNA binding
B	0005515	molecular_function	protein binding
B	0005634	cellular_component	nucleus
B	0005694	cellular_component	chromosome
B	0005730	cellular_component	nucleolus
B	0009294	biological_process	DNA-mediated transformation
B	0009536	cellular_component	plastid
B	0009611	biological_process	response to wounding
B	0009617	biological_process	response to bacterium
C	0000786	cellular_component	nucleosome
C	0003677	molecular_function	DNA binding
C	0005515	molecular_function	protein binding
C	0005634	cellular_component	nucleus
C	0005694	cellular_component	chromosome
C	0005730	cellular_component	nucleolus
C	0009536	cellular_component	plastid
D	0000786	cellular_component	nucleosome
D	0003677	molecular_function	DNA binding
D	0005515	molecular_function	protein binding
D	0005634	cellular_component	nucleus
D	0005694	cellular_component	chromosome
D	0005730	cellular_component	nucleolus
D	0009536	cellular_component	plastid
E	0000786	cellular_component	nucleosome
E	0003677	molecular_function	DNA binding
E	0005515	molecular_function	protein binding
E	0005576	cellular_component	extracellular region
E	0005634	cellular_component	nucleus
E	0005694	cellular_component	chromosome
E	0005829	cellular_component	cytosol
E	0005886	cellular_component	plasma membrane
E	0009536	cellular_component	plastid
E	0010369	cellular_component	chromocenter
F	0000786	cellular_component	nucleosome
F	0003677	molecular_function	DNA binding
F	0005515	molecular_function	protein binding
F	0005576	cellular_component	extracellular region
F	0005634	cellular_component	nucleus
F	0005694	cellular_component	chromosome
F	0005829	cellular_component	cytosol
F	0005886	cellular_component	plasma membrane
F	0009536	cellular_component	plastid
F	0010369	cellular_component	chromocenter
G	0000325	cellular_component	plant-type vacuole
G	0000786	cellular_component	nucleosome
G	0003677	molecular_function	DNA binding
G	0005515	molecular_function	protein binding
G	0005576	cellular_component	extracellular region
G	0005634	cellular_component	nucleus
G	0005694	cellular_component	chromosome
G	0005730	cellular_component	nucleolus
G	0005777	cellular_component	peroxisome
G	0005794	cellular_component	Golgi apparatus
G	0005829	cellular_component	cytosol
G	0005886	cellular_component	plasma membrane
G	0009414	biological_process	response to water deprivation
G	0009506	cellular_component	plasmodesma
G	0009507	cellular_component	chloroplast
G	0009536	cellular_component	plastid
G	0009579	cellular_component	thylakoid
H	0000325	cellular_component	plant-type vacuole
H	0000786	cellular_component	nucleosome
H	0003677	molecular_function	DNA binding
H	0005515	molecular_function	protein binding
H	0005576	cellular_component	extracellular region
H	0005634	cellular_component	nucleus
H	0005694	cellular_component	chromosome
H	0005730	cellular_component	nucleolus
H	0005777	cellular_component	peroxisome
H	0005794	cellular_component	Golgi apparatus
H	0005829	cellular_component	cytosol
H	0005886	cellular_component	plasma membrane
H	0009414	biological_process	response to water deprivation
H	0009506	cellular_component	plasmodesma
H	0009507	cellular_component	chloroplast
H	0009536	cellular_component	plastid
H	0009579	cellular_component	thylakoid
K	0000786	cellular_component	nucleosome
K	0003677	molecular_function	DNA binding
K	0003678	molecular_function	DNA helicase activity
K	0004386	molecular_function	helicase activity
K	0005515	molecular_function	protein binding
K	0005524	molecular_function	ATP binding
K	0005634	cellular_component	nucleus
K	0006338	biological_process	chromatin remodeling
K	0006346	biological_process	DNA methylation-dependent heterochromatin formation
K	0009294	biological_process	DNA-mediated transformation
K	0016787	molecular_function	hydrolase activity
K	0016887	molecular_function	ATP hydrolysis activity
K	0031507	biological_process	heterochromatin formation
K	0032197	biological_process	retrotransposition
K	0032508	biological_process	DNA duplex unwinding
K	0040029	biological_process	epigenetic regulation of gene expression

Functional Information from PROSITE/UniProt

site_id	PS00046
Number of Residues	7
Details	HISTONE_H2A Histone H2A signature. AGLqFPV

Chain	Residue	Details
A	ALA22-VAL28

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site_id	PS00047
Number of Residues	5
Details	HISTONE_H4 Histone H4 signature. GAKRH

Chain	Residue	Details
H	GLY14-HIS18

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site_id	PS00322
Number of Residues	7
Details	HISTONE_H3_1 Histone H3 signature 1. KAPRKQL

Chain	Residue	Details
F	LYS14-LEU20

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site_id	PS00357
Number of Residues	23
Details	HISTONE_H2B Histone H2B signature. REIQTavRlVLpGELaKHAVSEG

Chain	Residue	Details
D	ARG112-GLY134

---

site_id	PS00959
Number of Residues	9
Details	HISTONE_H3_2 Histone H3 signature 2. PFqRLVREI

Chain	Residue	Details
F	PRO66-ILE74

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Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	1
Details	BINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00541

Chain	Residue	Details
K	ASP227
G	LYS16-LYS20

---

site_id	SWS_FT_FI2
Number of Residues	4
Details	SITE: Not N6-acetylated => ECO:0000269|PubMed:15598823

Chain	Residue	Details
F	LYS27
C	LYS33
F	LYS36
E	LYS27
E	LYS36
D	LYS33
C	LYS5
C	LYS10
C	LYS15
C	LYS27

---

site_id	SWS_FT_FI3
Number of Residues	2
Details	SITE: Required for interaction with TSK => ECO:0000269|PubMed:35298257

Chain	Residue	Details
F	ALA31
E	ALA31

---

site_id	SWS_FT_FI4
Number of Residues	2
Details	MOD_RES: N6-methyllysine; alternate => ECO:0000269|PubMed:12581305, ECO:0000269|PubMed:14712277, ECO:0000269|PubMed:15598823, ECO:0000269|PubMed:16258034

Chain	Residue	Details
F	LYS4
E	LYS4

---

site_id	SWS_FT_FI5
Number of Residues	2
Details	MOD_RES: N6-methyllysine; alternate => ECO:0000269|PubMed:12456661, ECO:0000269|PubMed:12581305, ECO:0000269|PubMed:14712277, ECO:0000269|PubMed:15014946, ECO:0000269|PubMed:15598823

Chain	Residue	Details
F	LYS9
E	LYS9
C	LYS140

---

site_id	SWS_FT_FI6
Number of Residues	4
Details	MOD_RES: Phosphoserine => ECO:0000269|PubMed:14610360, ECO:0000269|PubMed:15753571

Chain	Residue	Details
F	SER10
F	SER28
E	SER10
E	SER28

---

site_id	SWS_FT_FI7
Number of Residues	2
Details	MOD_RES: Phosphothreonine => ECO:0000269|PubMed:15753571

Chain	Residue	Details
F	THR11
E	THR11

---

site_id	SWS_FT_FI8
Number of Residues	2
Details	MOD_RES: N6-acetyllysine => ECO:0000269|PubMed:15598823, ECO:0000269|PubMed:16648464, ECO:0000269|PubMed:17174094, ECO:0000269|PubMed:17363895

Chain	Residue	Details
F	LYS14
E	LYS14

---

site_id	SWS_FT_FI9
Number of Residues	4
Details	MOD_RES: N6-methyllysine; alternate => ECO:0000269|PubMed:15598823

Chain	Residue	Details
F	LYS18
F	LYS23
E	LYS18
E	LYS23

---

site_id	SWS_FT_FI10
Number of Residues	2
Details	MOD_RES: N6-methyllysine; alternate => ECO:0000269|PubMed:14712277, ECO:0000269|PubMed:15598823, ECO:0000269|PubMed:17174094, ECO:0000269|PubMed:17439305, ECO:0000269|PubMed:19503079, ECO:0000269|PubMed:24626927, ECO:0000269|PubMed:35298257

Chain	Residue	Details
F	LYS27
E	LYS27

---

site_id	SWS_FT_FI11
Number of Residues	2
Details	MOD_RES: N6-methyllysine; alternate => ECO:0000269|PubMed:15598823, ECO:0000269|PubMed:16299497

Chain	Residue	Details
F	LYS36
E	LYS36

---