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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

8JXB

Cryo-EM structure of rat megalin wingAc

Functional Information from GO Data
ChainGOidnamespacecontents
A0005509molecular_functioncalcium ion binding
B0005509molecular_functioncalcium ion binding
Functional Information from PROSITE/UniProt
site_idPS00010
Number of Residues12
DetailsASX_HYDROXYL Aspartic acid and asparagine hydroxylation site. CvNmrgsFrCaC
ChainResidueDetails
ACYS1405-CYS1416
ACYS3128-CYS3139
ACYS3169-CYS3180
ACYS4023-CYS4034
site_idPS00022
Number of Residues12
DetailsEGF_1 EGF-like domain signature 1. CkCssGysGEyC
ChainResidueDetails
ACYS4401-CYS4412
site_idPS00615
Number of Residues27
DetailsC_TYPE_LECTIN_1 C-type lectin domain signature. CVdideckespq..LCSQKCenvvgsYIC
ChainResidueDetails
ACYS3152-CYS3178
site_idPS01186
Number of Residues15
DetailsEGF_2 EGF-like domain signature 2. ClCeeGYilergqh.C
ChainResidueDetails
ACYS370-CYS384
ACYS688-CYS703
ACYS1374-CYS1389
ACYS1726-CYS1741
ACYS2044-CYS2059
ACYS3137-CYS3152
ACYS3178-CYS3193
ACYS4401-CYS4412
site_idPS01187
Number of Residues24
DetailsEGF_CA Calcium-binding EGF-like domain signature. DiNECdipgf.........Csqh....CvNmrgsFrC
ChainResidueDetails
AASP1391-CYS1414
AASP3154-CYS3178
AASP4009-CYS4032
site_idPS01209
Number of Residues23
DetailsLDLRA_1 LDL-receptor class A (LDLRA) domain signature. CIpaswr.CDgtrDCldd.TDEig...C
ChainResidueDetails
ACYS40-CYS62
ACYS1201-CYS1223
ACYS1244-CYS1267
ACYS1284-CYS1306
ACYS1326-CYS1349
ACYS2713-CYS2737
ACYS2754-CYS2776
ACYS2836-CYS2860
ACYS2878-CYS2901
ACYS2920-CYS2945
ACYS3007-CYS3029
ACYS80-CYS103
ACYS3046-CYS3070
ACYS3089-CYS3111
ACYS3527-CYS3550
ACYS3608-CYS3632
ACYS3649-CYS3673
ACYS3694-CYS3716
ACYS3734-CYS3756
ACYS3773-CYS3795
ACYS3812-CYS3834
ACYS3856-CYS3880
ACYS120-CYS142
ACYS3898-CYS3922
ACYS3942-CYS3964
ACYS195-CYS217
ACYS234-CYS256
ACYS1037-CYS1059
ACYS1079-CYS1101
ACYS1122-CYS1144
ACYS1162-CYS1184
Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues42
DetailsRepeat: {"description":"LDL-receptor class B 1","evidences":[{"source":"PROSITE-ProRule","id":"PRU00461","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI2
Number of Residues42
DetailsRepeat: {"description":"LDL-receptor class B 2","evidences":[{"source":"PROSITE-ProRule","id":"PRU00461","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI3
Number of Residues46
DetailsRepeat: {"description":"LDL-receptor class B 3","evidences":[{"source":"PROSITE-ProRule","id":"PRU00461","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI4
Number of Residues44
DetailsRepeat: {"description":"LDL-receptor class B 4","evidences":[{"source":"PROSITE-ProRule","id":"PRU00461","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI5
Number of Residues41
DetailsRepeat: {"description":"LDL-receptor class B 6","evidences":[{"source":"PROSITE-ProRule","id":"PRU00461","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI6
Number of Residues43
DetailsRepeat: {"description":"LDL-receptor class B 8","evidences":[{"source":"PROSITE-ProRule","id":"PRU00461","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI7
Number of Residues38
DetailsDomain: {"description":"LDL-receptor class A 16","evidences":[{"source":"PROSITE-ProRule","id":"PRU00124","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI8
Number of Residues36
DetailsDomain: {"description":"LDL-receptor class A 17","evidences":[{"source":"PROSITE-ProRule","id":"PRU00124","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI9
Number of Residues39
DetailsDomain: {"description":"LDL-receptor class A 18","evidences":[{"source":"PROSITE-ProRule","id":"PRU00124","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI10
Number of Residues39
DetailsDomain: {"description":"LDL-receptor class A 19","evidences":[{"source":"PROSITE-ProRule","id":"PRU00124","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI11
Number of Residues38
DetailsDomain: {"description":"LDL-receptor class A 20","evidences":[{"source":"PROSITE-ProRule","id":"PRU00124","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI12
Number of Residues10
DetailsGlycosylation: {"description":"N-linked (GlcNAc...) asparagine","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI13
Number of Residues36
DetailsDomain: {"description":"LDL-receptor class A 6","evidences":[{"source":"PROSITE-ProRule","id":"PRU00124","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI14
Number of Residues43
DetailsDomain: {"description":"LDL-receptor class A 7","evidences":[{"source":"PROSITE-ProRule","id":"PRU00124","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI15
Number of Residues35
DetailsDomain: {"description":"EGF-like 1; calcium-binding","evidences":[{"source":"PROSITE-ProRule","id":"PRU00076","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI16
Number of Residues42
DetailsRepeat: {"description":"LDL-receptor class B 5","evidences":[{"source":"PROSITE-ProRule","id":"PRU00461","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI17
Number of Residues43
DetailsRepeat: {"description":"LDL-receptor class B 7","evidences":[{"source":"PROSITE-ProRule","id":"PRU00461","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI18
Number of Residues36
DetailsDomain: {"description":"LDL-receptor class A 8","evidences":[{"source":"PROSITE-ProRule","id":"PRU00124","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI19
Number of Residues37
DetailsDomain: {"description":"LDL-receptor class A 9","evidences":[{"source":"PROSITE-ProRule","id":"PRU00124","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI20
Number of Residues36
DetailsDomain: {"description":"LDL-receptor class A 10","evidences":[{"source":"PROSITE-ProRule","id":"PRU00124","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI21
Number of Residues36
DetailsDomain: {"description":"LDL-receptor class A 11","evidences":[{"source":"PROSITE-ProRule","id":"PRU00124","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI22
Number of Residues37
DetailsDomain: {"description":"LDL-receptor class A 12","evidences":[{"source":"PROSITE-ProRule","id":"PRU00124","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI23
Number of Residues38
DetailsDomain: {"description":"LDL-receptor class A 13","evidences":[{"source":"PROSITE-ProRule","id":"PRU00124","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI24
Number of Residues36
DetailsDomain: {"description":"LDL-receptor class A 14","evidences":[{"source":"PROSITE-ProRule","id":"PRU00124","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails
site_idSWS_FT_FI25
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"UniProtKB","id":"P98164","evidenceCode":"ECO:0000250"}]}
ChainResidueDetails
site_idSWS_FT_FI26
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"17245526","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

238895

PDB entries from 2025-07-16

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