8J92
Cryo-EM structure of nucleosome containing Arabidopsis thaliana H2A.W
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000786 | cellular_component | nucleosome |
A | 0003677 | molecular_function | DNA binding |
A | 0005515 | molecular_function | protein binding |
A | 0005576 | cellular_component | extracellular region |
A | 0005634 | cellular_component | nucleus |
A | 0005694 | cellular_component | chromosome |
A | 0005829 | cellular_component | cytosol |
A | 0005886 | cellular_component | plasma membrane |
A | 0009536 | cellular_component | plastid |
A | 0010369 | cellular_component | chromocenter |
B | 0000325 | cellular_component | plant-type vacuole |
B | 0000786 | cellular_component | nucleosome |
B | 0003677 | molecular_function | DNA binding |
B | 0005515 | molecular_function | protein binding |
B | 0005576 | cellular_component | extracellular region |
B | 0005634 | cellular_component | nucleus |
B | 0005694 | cellular_component | chromosome |
B | 0005730 | cellular_component | nucleolus |
B | 0005777 | cellular_component | peroxisome |
B | 0005794 | cellular_component | Golgi apparatus |
B | 0005829 | cellular_component | cytosol |
B | 0005886 | cellular_component | plasma membrane |
B | 0009414 | biological_process | response to water deprivation |
B | 0009506 | cellular_component | plasmodesma |
B | 0009507 | cellular_component | chloroplast |
B | 0009536 | cellular_component | plastid |
B | 0009579 | cellular_component | thylakoid |
C | 0000786 | cellular_component | nucleosome |
C | 0000792 | cellular_component | heterochromatin |
C | 0003677 | molecular_function | DNA binding |
C | 0003682 | molecular_function | chromatin binding |
C | 0005634 | cellular_component | nucleus |
C | 0005694 | cellular_component | chromosome |
C | 0005721 | cellular_component | pericentric heterochromatin |
C | 0005730 | cellular_component | nucleolus |
C | 0009506 | cellular_component | plasmodesma |
C | 0009536 | cellular_component | plastid |
C | 0070828 | biological_process | heterochromatin organization |
D | 0000786 | cellular_component | nucleosome |
D | 0003677 | molecular_function | DNA binding |
D | 0005634 | cellular_component | nucleus |
D | 0005694 | cellular_component | chromosome |
D | 0005730 | cellular_component | nucleolus |
D | 0005829 | cellular_component | cytosol |
D | 0009534 | cellular_component | chloroplast thylakoid |
D | 0009570 | cellular_component | chloroplast stroma |
E | 0000786 | cellular_component | nucleosome |
E | 0003677 | molecular_function | DNA binding |
E | 0005515 | molecular_function | protein binding |
E | 0005576 | cellular_component | extracellular region |
E | 0005634 | cellular_component | nucleus |
E | 0005694 | cellular_component | chromosome |
E | 0005829 | cellular_component | cytosol |
E | 0005886 | cellular_component | plasma membrane |
E | 0009536 | cellular_component | plastid |
E | 0010369 | cellular_component | chromocenter |
F | 0000325 | cellular_component | plant-type vacuole |
F | 0000786 | cellular_component | nucleosome |
F | 0003677 | molecular_function | DNA binding |
F | 0005515 | molecular_function | protein binding |
F | 0005576 | cellular_component | extracellular region |
F | 0005634 | cellular_component | nucleus |
F | 0005694 | cellular_component | chromosome |
F | 0005730 | cellular_component | nucleolus |
F | 0005777 | cellular_component | peroxisome |
F | 0005794 | cellular_component | Golgi apparatus |
F | 0005829 | cellular_component | cytosol |
F | 0005886 | cellular_component | plasma membrane |
F | 0009414 | biological_process | response to water deprivation |
F | 0009506 | cellular_component | plasmodesma |
F | 0009507 | cellular_component | chloroplast |
F | 0009536 | cellular_component | plastid |
F | 0009579 | cellular_component | thylakoid |
G | 0000786 | cellular_component | nucleosome |
G | 0000792 | cellular_component | heterochromatin |
G | 0003677 | molecular_function | DNA binding |
G | 0003682 | molecular_function | chromatin binding |
G | 0005634 | cellular_component | nucleus |
G | 0005694 | cellular_component | chromosome |
G | 0005721 | cellular_component | pericentric heterochromatin |
G | 0005730 | cellular_component | nucleolus |
G | 0009506 | cellular_component | plasmodesma |
G | 0009536 | cellular_component | plastid |
G | 0070828 | biological_process | heterochromatin organization |
H | 0000786 | cellular_component | nucleosome |
H | 0003677 | molecular_function | DNA binding |
H | 0005634 | cellular_component | nucleus |
H | 0005694 | cellular_component | chromosome |
H | 0005730 | cellular_component | nucleolus |
H | 0005829 | cellular_component | cytosol |
H | 0009534 | cellular_component | chloroplast thylakoid |
H | 0009570 | cellular_component | chloroplast stroma |
Functional Information from PROSITE/UniProt
site_id | PS00046 |
Number of Residues | 7 |
Details | HISTONE_H2A Histone H2A signature. AGLqFPV |
Chain | Residue | Details |
C | ALA30-VAL36 |
site_id | PS00047 |
Number of Residues | 5 |
Details | HISTONE_H4 Histone H4 signature. GAKRH |
Chain | Residue | Details |
B | GLY14-HIS18 |
site_id | PS00322 |
Number of Residues | 7 |
Details | HISTONE_H3_1 Histone H3 signature 1. KAPRKQL |
Chain | Residue | Details |
A | LYS14-LEU20 |
site_id | PS00357 |
Number of Residues | 23 |
Details | HISTONE_H2B Histone H2B signature. REIQTavRlVLpGELaKHAVSEG |
Chain | Residue | Details |
D | ARG117-GLY139 |
site_id | PS00959 |
Number of Residues | 9 |
Details | HISTONE_H3_2 Histone H3 signature 2. PFqRLVREI |
Chain | Residue | Details |
A | PRO66-ILE74 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | MOD_RES: N-methylalanine; alternate => ECO:0000269|PubMed:17691833 |
Chain | Residue | Details |
D | ALA1 | |
H | ALA1 |
site_id | SWS_FT_FI2 |
Number of Residues | 10 |
Details | MOD_RES: N6-acetyllysine => ECO:0000269|PubMed:17691833 |
Chain | Residue | Details |
D | LYS6 | |
H | LYS38 | |
D | LYS11 | |
D | LYS27 | |
D | LYS32 | |
D | LYS38 | |
H | LYS6 | |
H | LYS11 | |
H | LYS27 | |
H | LYS32 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | MOD_RES: N6,N6-dimethyllysine => ECO:0000250|UniProtKB:Q9FFC0 |
Chain | Residue | Details |
D | LYS12 | |
H | LYS12 |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | MOD_RES: N6-acetyllysine; partial => ECO:0000269|PubMed:17691833 |
Chain | Residue | Details |
D | LYS39 | |
H | LYS39 |
site_id | SWS_FT_FI5 |
Number of Residues | 4 |
Details | CROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:Q9LQQ4 |
Chain | Residue | Details |
D | LYS145 | |
E | LYS9 | |
H | LYS145 |
site_id | SWS_FT_FI6 |
Number of Residues | 4 |
Details | MOD_RES: Phosphoserine => ECO:0000269|PubMed:14610360, ECO:0000269|PubMed:15753571 |
Chain | Residue | Details |
A | SER10 | |
A | SER28 | |
E | SER10 | |
E | SER28 |
site_id | SWS_FT_FI7 |
Number of Residues | 2 |
Details | MOD_RES: Phosphothreonine => ECO:0000269|PubMed:15753571 |
Chain | Residue | Details |
A | THR11 | |
E | THR11 |
site_id | SWS_FT_FI8 |
Number of Residues | 2 |
Details | MOD_RES: N6-acetyllysine => ECO:0000269|PubMed:15598823, ECO:0000269|PubMed:16648464, ECO:0000269|PubMed:17174094, ECO:0000269|PubMed:17363895 |
Chain | Residue | Details |
A | LYS14 | |
E | LYS14 |
site_id | SWS_FT_FI9 |
Number of Residues | 4 |
Details | MOD_RES: N6-methyllysine; alternate => ECO:0000269|PubMed:15598823 |
Chain | Residue | Details |
A | LYS18 | |
A | LYS23 | |
E | LYS18 | |
E | LYS23 |
site_id | SWS_FT_FI10 |
Number of Residues | 2 |
Details | MOD_RES: N6-methyllysine; alternate => ECO:0000269|PubMed:14712277, ECO:0000269|PubMed:15598823, ECO:0000269|PubMed:17174094, ECO:0000269|PubMed:17439305, ECO:0000269|PubMed:19503079, ECO:0000269|PubMed:24626927, ECO:0000269|PubMed:35298257 |
Chain | Residue | Details |
A | LYS27 | |
E | LYS27 |
site_id | SWS_FT_FI11 |
Number of Residues | 2 |
Details | MOD_RES: N6-methyllysine; alternate => ECO:0000269|PubMed:15598823, ECO:0000269|PubMed:16299497 |
Chain | Residue | Details |
A | LYS36 | |
E | LYS36 |